Clone RE08220 Report

Search the DGRC for RE08220

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:82
Well:20
Vector:pFlc-1
Associated Gene/TranscriptTsp42Ei-RA
Protein status:RE08220.pep: gold
Preliminary Size:967
Sequenced Size:1318

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12843 2001-12-14 Blastp of sequenced clone
CG12843 2002-01-01 Sim4 clustering to Release 2
CG12843 2003-01-01 Sim4 clustering to Release 3
Tsp42Ei 2008-04-29 Release 5.5 accounting
Tsp42Ei 2008-08-15 Release 5.9 accounting
Tsp42Ei 2008-12-18 5.12 accounting

Clone Sequence Records

RE08220.complete Sequence

1318 bp (1318 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070990

> RE08220.complete
GCTAGTTGATTCGCACAGCTGAACCACGGCGGTCGGACGTCGAAAGATCT
TAGCGCGCCGCTGTATCCGAAAGATACGCATCTGAAACAGGCTGCTGGCC
ATATAGCCTTATATGTAAGGCCTCTGATGCACTCTACTGCGCGTTGCCTT
CGTACATCTTAACAGTCGGTCTCCAGCCGCATCTACAGGTTGATTGATCC
ACAGTAATCATGGGTCTGGGCGCCACTACAGTGAAGCATGTGCTGCTTTT
GCTGAACTTTGTGTTTTCCGTGCTCGGGCTGGCGCTGATCGCCTTCGGAA
TTTTCTTTTTGATCTCCGCCGCTGAGAATGCAGTCAGCATTGGGAAAAAT
GTGGCCGGGGGCCTAATCATCGCCTTGGGCGTTGTCATCCTCATCATTGC
GATCTTCGGCTGCCTGGCTGCCATCCATGAGGCTCCTGTGAGGCTCCTCA
TATATGTGGGAGCCGTGGTGCTGCTGATCCTCGCCCAGCTAATTTTTCTC
GGCATGTCCTCACACGGCACCAAGGATGGAATCTCGGGCAGCATCAACGA
GGGATTCGACCGTCTCTGGGAATCGGAGCGCAACCAAACAGGCGCCTTGA
GCTACTACGAGTCCTGGCTGCAGTGCTGCGGGGTCAACAGTTCCGAGGAC
TACTGGATCATCCATCATGGCATTCCGTCCAGCTGTTGTCCAGAAAGCAA
GTGCATGGACACTCCGAGCAGGGTCTTCAAGACGGGCTGCAAGGCCGCAT
TCGTGAAGTATCTGGACGATAAGTTACTGGTGTTCAAAATCGTCTGCTGG
TTGCTTGTCATCGGAGAGGCTGTGGGAGCTGTTTTCGGTTGGCTGCTCTA
CAGCAGCGTAAAGAACCAAAGCCGCCGCAACAATGCCGTCTGGATGTGAG
GGGTTTTCTAAGTCATCTTAGTATTAATTAACAATATATTTGAATCTGTT
TTCTAATCAAATGTTTCCTACTTAAATATTTAATAACCGATTACTAAAGG
CAAACCCAATCTGTACAAAGGGCTTAAGATTTTAGGTACGATTTTCGAGA
AATTTGTAATGGGAATAATGTTCATATATTGATAACGTCTTTTTGATAAC
GATAGTCACATAAAGTTATTACTCTTTAACCAAAATCTATTTATTAAGCT
TTTTTCTCCATTATCATTACCAAACCAATAGACATTTTTCAAATATTCTA
ATTTCAGTTCGTAAGAACCATAGAACACACCATTTCGATCTTGTTTCTCA
TCATTTTTTTCAGTTGTATACAATTAAAAAACACATCAAGGGCTTATAAC
TTCAAAAAAAAAAAAAAA

RE08220.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ei-RA 1398 Tsp42Ei-RA 74..1375 4..1306 6475 99.9 Plus
Tsp42Ei.a 1240 Tsp42Ei.a 115..1240 177..1303 5595 99.9 Plus
Tsp42Ei.a 1240 Tsp42Ei.a 4..114 4..114 555 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2923875..2924360 817..1303 2370 99.6 Plus
chr2R 21145070 chr2R 2923454..2923820 453..819 1790 99.2 Plus
chr2R 21145070 chr2R 2922541..2922809 4..272 1330 99.6 Plus
chr2R 21145070 chr2R 2922881..2923063 270..452 900 99.5 Plus
chr2L 23010047 chr2L 19516257..19516320 1090..1153 245 92.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:30:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7036464..7036952 817..1306 2400 99.8 Plus
2R 25286936 2R 7036043..7036409 453..819 1835 100 Plus
2R 25286936 2R 7035130..7035398 4..272 1345 100 Plus
2R 25286936 2R 7035470..7035652 270..452 915 100 Plus
2L 23513712 2L 19517702..19517765 1090..1153 260 93.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7037663..7038151 817..1306 2410 99.7 Plus
2R 25260384 2R 7037242..7037608 453..819 1835 100 Plus
2R 25260384 2R 7036329..7036597 4..272 1345 100 Plus
2R 25260384 2R 7036669..7036851 270..452 915 100 Plus
2L 23513712 2L 19517702..19517780 1090..1167 265 91.1 Plus
2L 23513712 2L 19517806..19517848 1177..1219 140 88.3 Plus
Blast to na_te.dros performed 2019-03-15 20:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 1755..2027 1157..889 112 55.8 Minus

RE08220.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:05:44 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2922538..2922806 1..269 99 -> Plus
chr2R 2922881..2923063 270..452 99 -> Plus
chr2R 2923454..2923819 453..818 99 -> Plus
chr2R 2923877..2924360 819..1303 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:51:13 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 1..690 210..899 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:03:18 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 1..690 210..899 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:19:25 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 1..690 210..899 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:27:57 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 1..690 210..899 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:21 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 1..690 210..899 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:30:24 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 1..1302 1..1303 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:03:18 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 1..1302 1..1303 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:19:25 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 3..1304 1..1303 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:27:57 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 1..1302 1..1303 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:21 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ei-RA 3..1304 1..1303 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:44 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7035127..7035395 1..269 99 -> Plus
2R 7035470..7035652 270..452 100 -> Plus
2R 7036043..7036408 453..818 100 -> Plus
2R 7036466..7036949 819..1303 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:44 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7035127..7035395 1..269 99 -> Plus
2R 7035470..7035652 270..452 100 -> Plus
2R 7036043..7036408 453..818 100 -> Plus
2R 7036466..7036949 819..1303 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:44 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7035127..7035395 1..269 99 -> Plus
2R 7035470..7035652 270..452 100 -> Plus
2R 7036043..7036408 453..818 100 -> Plus
2R 7036466..7036949 819..1303 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:19:25 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2922632..2922900 1..269 99 -> Plus
arm_2R 2922975..2923157 270..452 100 -> Plus
arm_2R 2923548..2923913 453..818 100 -> Plus
arm_2R 2923971..2924454 819..1303 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:03:46 Download gff for RE08220.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7036326..7036594 1..269 99 -> Plus
2R 7036669..7036851 270..452 100 -> Plus
2R 7037242..7037607 453..818 100 -> Plus
2R 7037665..7038148 819..1303 99   Plus

RE08220.pep Sequence

Translation from 209 to 898

> RE08220.pep
MGLGATTVKHVLLLLNFVFSVLGLALIAFGIFFLISAAENAVSIGKNVAG
GLIIALGVVILIIAIFGCLAAIHEAPVRLLIYVGAVVLLILAQLIFLGMS
SHGTKDGISGSINEGFDRLWESERNQTGALSYYESWLQCCGVNSSEDYWI
IHHGIPSSCCPESKCMDTPSRVFKTGCKAAFVKYLDDKLLVFKIVCWLLV
IGEAVGAVFGWLLYSSVKNQSRRNNAVWM*

RE08220.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12686-PA 228 GF12686-PA 1..228 1..229 991 86.5 Plus
Dana\GF12685-PA 229 GF12685-PA 8..224 8..223 314 30.3 Plus
Dana\GF12683-PA 220 GF12683-PA 3..217 4..223 273 29.7 Plus
Dana\GF12682-PA 227 GF12682-PA 1..226 1..225 231 27 Plus
Dana\GF13154-PA 226 GF13154-PA 1..225 1..225 226 29.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23247-PA 229 GG23247-PA 1..229 1..229 1160 96.9 Plus
Dere\GG23246-PA 231 GG23246-PA 8..226 8..223 306 30.9 Plus
Dere\GG23244-PA 220 GG23244-PA 3..218 4..224 258 29 Plus
Dere\GG23251-PA 217 GG23251-PA 1..216 1..225 204 29.7 Plus
Dere\GG23240-PA 226 GG23240-PA 1..223 1..223 194 29 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21503-PA 226 GH21503-PA 1..226 1..229 800 71.6 Plus
Dgri\GH21502-PA 229 GH21502-PA 1..224 1..223 387 36.4 Plus
Dgri\GH21500-PA 219 GH21500-PA 1..216 3..223 239 28.4 Plus
Dgri\GH21494-PA 226 GH21494-PA 1..223 1..223 231 30.7 Plus
Dgri\GH21499-PA 230 GH21499-PA 1..228 1..224 209 27.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ei-PB 229 CG12843-PB 1..229 1..229 1185 100 Plus
Tsp42Ei-PA 229 CG12843-PA 1..229 1..229 1185 100 Plus
Tsp42Eh-PB 231 CG12844-PB 8..226 8..223 323 31.8 Plus
Tsp42Ef-PA 220 CG12845-PA 5..218 6..224 266 29 Plus
Tsp42El-PA 217 CG12840-PA 1..216 1..225 239 28.1 Plus
Tsp42Er-PA 211 CG12837-PA 1..209 1..224 226 26.2 Plus
Tsp42Ea-PC 226 CG18817-PC 1..223 1..223 218 27.6 Plus
Tsp42Ea-PB 226 CG18817-PB 1..223 1..223 218 27.6 Plus
Tsp42Ea-PA 226 CG18817-PA 1..223 1..223 218 27.6 Plus
Tsp42Ee-PB 228 CG10106-PB 1..226 1..224 217 27.3 Plus
Tsp42Ee-PA 228 CG10106-PA 1..226 1..224 217 27.3 Plus
Tsp42Ed-PB 227 CG12846-PB 1..226 1..225 211 25.1 Plus
Tsp42Ed-PA 227 CG12846-PA 1..226 1..225 211 25.1 Plus
Tsp42Eg-PA 218 CG12142-PA 1..213 1..224 200 23 Plus
Tsp42En-PB 218 CG12839-PB 8..215 8..223 192 26.4 Plus
Tsp42En-PA 218 CG12839-PA 8..215 8..223 192 26.4 Plus
Tsp47F-PB 239 CG9033-PB 5..238 4..226 187 25.5 Plus
lbm-PB 208 CG2374-PB 1..205 1..223 156 28.1 Plus
lbm-PA 208 CG2374-PA 1..205 1..223 156 28.1 Plus
CG30160-PA 222 CG30160-PA 9..186 9..184 146 26.6 Plus
Tsp42Eb-PB 222 CG18816-PB 9..186 9..184 146 26.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19473-PA 226 GI19473-PA 1..226 1..229 792 69 Plus
Dmoj\GI19472-PA 227 GI19472-PA 8..222 8..223 378 35.3 Plus
Dmoj\GI19470-PA 220 GI19470-PA 14..218 15..224 224 30.5 Plus
Dmoj\GI19469-PA 231 GI19469-PA 1..229 1..224 222 28.6 Plus
Dmoj\GI19464-PA 226 GI19464-PA 1..225 1..225 220 28.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11142-PA 228 GL11142-PA 1..228 1..229 1024 83.8 Plus
Dper\GL11143-PA 225 GL11143-PA 2..215 5..225 343 39.1 Plus
Dper\GL11141-PA 231 GL11141-PA 1..226 1..223 311 32.6 Plus
Dper\GL11133-PA 226 GL11133-PA 1..225 1..225 234 29 Plus
Dper\GL11139-PA 220 GL11139-PA 3..218 4..224 229 28.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24622-PA 228 GA24622-PA 1..228 1..229 1024 83.8 Plus
Dpse\GA24623-PA 225 GA24623-PA 2..215 5..225 343 39.1 Plus
Dpse\GA11849-PA 231 GA11849-PA 1..226 1..223 325 33.5 Plus
Dpse\GA10076-PA 228 GA10076-PA 1..226 1..224 236 28.7 Plus
Dpse\GA15095-PA 226 GA15095-PA 1..225 1..225 234 29 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20919-PA 229 GM20919-PA 1..229 1..229 1161 97.8 Plus
Dsec\GM20918-PA 231 GM20918-PA 8..226 8..223 315 31.8 Plus
Dsec\GM20916-PA 220 GM20916-PA 3..218 4..224 249 27.8 Plus
Dsec\GM20924-PA 217 GM20924-PA 1..216 1..225 198 26.8 Plus
Dsec\GM20827-PA 227 GM20827-PA 1..226 1..225 195 25.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10448-PA 229 GD10448-PA 1..229 1..229 1158 97.8 Plus
Dsim\GD10445-PA 225 GD10445-PA 3..223 4..224 252 28 Plus
Dsim\GD10447-PA 233 GD10447-PA 8..228 8..223 237 28.1 Plus
Dsim\GD10455-PA 211 GD10455-PA 1..209 1..224 218 27.6 Plus
Dsim\GD10452-PA 217 GD10452-PA 1..216 1..225 195 26.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15134-PA 226 GJ15134-PA 1..226 1..229 874 71.2 Plus
Dvir\GJ15133-PA 229 GJ15133-PA 1..224 1..223 372 33.8 Plus
Dvir\GJ15124-PA 226 GJ15124-PA 1..225 1..225 224 29.3 Plus
Dvir\GJ15130-PA 220 GJ15130-PA 14..218 15..224 219 30.5 Plus
Dvir\GJ15128-PA 230 GJ15128-PA 1..228 1..224 213 28.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21780-PA 228 GK21780-PA 1..228 1..229 911 80.8 Plus
Dwil\GK21779-PA 231 GK21779-PA 8..226 7..223 320 32.7 Plus
Dwil\GK21783-PA 217 GK21783-PA 1..216 1..225 262 29.8 Plus
Dwil\GK21771-PA 226 GK21771-PA 1..225 1..225 231 29.3 Plus
Dwil\GK21776-PA 228 GK21776-PA 1..226 1..224 219 29.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19098-PA 229 GE19098-PA 1..229 1..229 1155 96.9 Plus
Dyak\GE19097-PA 223 GE19097-PA 8..218 8..223 256 28.2 Plus
Dyak\GE19095-PA 220 GE19095-PA 3..218 4..224 240 28.5 Plus
Dyak\GE19105-PA 211 GE19105-PA 1..209 1..224 215 26.7 Plus
Dyak\GE19101-PA 217 GE19101-PA 1..216 1..225 203 27.6 Plus

RE08220.hyp Sequence

Translation from 209 to 898

> RE08220.hyp
MGLGATTVKHVLLLLNFVFSVLGLALIAFGIFFLISAAENAVSIGKNVAG
GLIIALGVVILIIAIFGCLAAIHEAPVRLLIYVGAVVLLILAQLIFLGMS
SHGTKDGISGSINEGFDRLWESERNQTGALSYYESWLQCCGVNSSEDYWI
IHHGIPSSCCPESKCMDTPSRVFKTGCKAAFVKYLDDKLLVFKIVCWLLV
IGEAVGAVFGWLLYSSVKNQSRRNNAVWM*

RE08220.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ei-PB 229 CG12843-PB 1..229 1..229 1185 100 Plus
Tsp42Ei-PA 229 CG12843-PA 1..229 1..229 1185 100 Plus
Tsp42Eh-PB 231 CG12844-PB 8..226 8..223 323 31.8 Plus
Tsp42Ef-PA 220 CG12845-PA 5..218 6..224 266 29 Plus
Tsp42El-PA 217 CG12840-PA 1..216 1..225 239 28.1 Plus