BDGP Sequence Production Resources |
Search the DGRC for RE08220
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 82 |
Well: | 20 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Tsp42Ei-RA |
Protein status: | RE08220.pep: gold |
Preliminary Size: | 967 |
Sequenced Size: | 1318 |
Gene | Date | Evidence |
---|---|---|
CG12843 | 2001-12-14 | Blastp of sequenced clone |
CG12843 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12843 | 2003-01-01 | Sim4 clustering to Release 3 |
Tsp42Ei | 2008-04-29 | Release 5.5 accounting |
Tsp42Ei | 2008-08-15 | Release 5.9 accounting |
Tsp42Ei | 2008-12-18 | 5.12 accounting |
1318 bp (1318 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070990
> RE08220.complete GCTAGTTGATTCGCACAGCTGAACCACGGCGGTCGGACGTCGAAAGATCT TAGCGCGCCGCTGTATCCGAAAGATACGCATCTGAAACAGGCTGCTGGCC ATATAGCCTTATATGTAAGGCCTCTGATGCACTCTACTGCGCGTTGCCTT CGTACATCTTAACAGTCGGTCTCCAGCCGCATCTACAGGTTGATTGATCC ACAGTAATCATGGGTCTGGGCGCCACTACAGTGAAGCATGTGCTGCTTTT GCTGAACTTTGTGTTTTCCGTGCTCGGGCTGGCGCTGATCGCCTTCGGAA TTTTCTTTTTGATCTCCGCCGCTGAGAATGCAGTCAGCATTGGGAAAAAT GTGGCCGGGGGCCTAATCATCGCCTTGGGCGTTGTCATCCTCATCATTGC GATCTTCGGCTGCCTGGCTGCCATCCATGAGGCTCCTGTGAGGCTCCTCA TATATGTGGGAGCCGTGGTGCTGCTGATCCTCGCCCAGCTAATTTTTCTC GGCATGTCCTCACACGGCACCAAGGATGGAATCTCGGGCAGCATCAACGA GGGATTCGACCGTCTCTGGGAATCGGAGCGCAACCAAACAGGCGCCTTGA GCTACTACGAGTCCTGGCTGCAGTGCTGCGGGGTCAACAGTTCCGAGGAC TACTGGATCATCCATCATGGCATTCCGTCCAGCTGTTGTCCAGAAAGCAA GTGCATGGACACTCCGAGCAGGGTCTTCAAGACGGGCTGCAAGGCCGCAT TCGTGAAGTATCTGGACGATAAGTTACTGGTGTTCAAAATCGTCTGCTGG TTGCTTGTCATCGGAGAGGCTGTGGGAGCTGTTTTCGGTTGGCTGCTCTA CAGCAGCGTAAAGAACCAAAGCCGCCGCAACAATGCCGTCTGGATGTGAG GGGTTTTCTAAGTCATCTTAGTATTAATTAACAATATATTTGAATCTGTT TTCTAATCAAATGTTTCCTACTTAAATATTTAATAACCGATTACTAAAGG CAAACCCAATCTGTACAAAGGGCTTAAGATTTTAGGTACGATTTTCGAGA AATTTGTAATGGGAATAATGTTCATATATTGATAACGTCTTTTTGATAAC GATAGTCACATAAAGTTATTACTCTTTAACCAAAATCTATTTATTAAGCT TTTTTCTCCATTATCATTACCAAACCAATAGACATTTTTCAAATATTCTA ATTTCAGTTCGTAAGAACCATAGAACACACCATTTCGATCTTGTTTCTCA TCATTTTTTTCAGTTGTATACAATTAAAAAACACATCAAGGGCTTATAAC TTCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 2923875..2924360 | 817..1303 | 2370 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 2923454..2923820 | 453..819 | 1790 | 99.2 | Plus |
chr2R | 21145070 | chr2R | 2922541..2922809 | 4..272 | 1330 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 2922881..2923063 | 270..452 | 900 | 99.5 | Plus |
chr2L | 23010047 | chr2L | 19516257..19516320 | 1090..1153 | 245 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7036464..7036952 | 817..1306 | 2400 | 99.8 | Plus |
2R | 25286936 | 2R | 7036043..7036409 | 453..819 | 1835 | 100 | Plus |
2R | 25286936 | 2R | 7035130..7035398 | 4..272 | 1345 | 100 | Plus |
2R | 25286936 | 2R | 7035470..7035652 | 270..452 | 915 | 100 | Plus |
2L | 23513712 | 2L | 19517702..19517765 | 1090..1153 | 260 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7037663..7038151 | 817..1306 | 2410 | 99.7 | Plus |
2R | 25260384 | 2R | 7037242..7037608 | 453..819 | 1835 | 100 | Plus |
2R | 25260384 | 2R | 7036329..7036597 | 4..272 | 1345 | 100 | Plus |
2R | 25260384 | 2R | 7036669..7036851 | 270..452 | 915 | 100 | Plus |
2L | 23513712 | 2L | 19517702..19517780 | 1090..1167 | 265 | 91.1 | Plus |
2L | 23513712 | 2L | 19517806..19517848 | 1177..1219 | 140 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 1755..2027 | 1157..889 | 112 | 55.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 2922538..2922806 | 1..269 | 99 | -> | Plus |
chr2R | 2922881..2923063 | 270..452 | 99 | -> | Plus |
chr2R | 2923454..2923819 | 453..818 | 99 | -> | Plus |
chr2R | 2923877..2924360 | 819..1303 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ei-RA | 1..690 | 210..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ei-RA | 1..690 | 210..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ei-RA | 1..690 | 210..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ei-RA | 1..690 | 210..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ei-RA | 1..690 | 210..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ei-RA | 1..1302 | 1..1303 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ei-RA | 1..1302 | 1..1303 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ei-RA | 3..1304 | 1..1303 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ei-RA | 1..1302 | 1..1303 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ei-RA | 3..1304 | 1..1303 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7035127..7035395 | 1..269 | 99 | -> | Plus |
2R | 7035470..7035652 | 270..452 | 100 | -> | Plus |
2R | 7036043..7036408 | 453..818 | 100 | -> | Plus |
2R | 7036466..7036949 | 819..1303 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7035127..7035395 | 1..269 | 99 | -> | Plus |
2R | 7035470..7035652 | 270..452 | 100 | -> | Plus |
2R | 7036043..7036408 | 453..818 | 100 | -> | Plus |
2R | 7036466..7036949 | 819..1303 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7035127..7035395 | 1..269 | 99 | -> | Plus |
2R | 7035470..7035652 | 270..452 | 100 | -> | Plus |
2R | 7036043..7036408 | 453..818 | 100 | -> | Plus |
2R | 7036466..7036949 | 819..1303 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 2922632..2922900 | 1..269 | 99 | -> | Plus |
arm_2R | 2922975..2923157 | 270..452 | 100 | -> | Plus |
arm_2R | 2923548..2923913 | 453..818 | 100 | -> | Plus |
arm_2R | 2923971..2924454 | 819..1303 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7036326..7036594 | 1..269 | 99 | -> | Plus |
2R | 7036669..7036851 | 270..452 | 100 | -> | Plus |
2R | 7037242..7037607 | 453..818 | 100 | -> | Plus |
2R | 7037665..7038148 | 819..1303 | 99 | Plus |
Translation from 209 to 898
> RE08220.pep MGLGATTVKHVLLLLNFVFSVLGLALIAFGIFFLISAAENAVSIGKNVAG GLIIALGVVILIIAIFGCLAAIHEAPVRLLIYVGAVVLLILAQLIFLGMS SHGTKDGISGSINEGFDRLWESERNQTGALSYYESWLQCCGVNSSEDYWI IHHGIPSSCCPESKCMDTPSRVFKTGCKAAFVKYLDDKLLVFKIVCWLLV IGEAVGAVFGWLLYSSVKNQSRRNNAVWM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12686-PA | 228 | GF12686-PA | 1..228 | 1..229 | 991 | 86.5 | Plus |
Dana\GF12685-PA | 229 | GF12685-PA | 8..224 | 8..223 | 314 | 30.3 | Plus |
Dana\GF12683-PA | 220 | GF12683-PA | 3..217 | 4..223 | 273 | 29.7 | Plus |
Dana\GF12682-PA | 227 | GF12682-PA | 1..226 | 1..225 | 231 | 27 | Plus |
Dana\GF13154-PA | 226 | GF13154-PA | 1..225 | 1..225 | 226 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23247-PA | 229 | GG23247-PA | 1..229 | 1..229 | 1160 | 96.9 | Plus |
Dere\GG23246-PA | 231 | GG23246-PA | 8..226 | 8..223 | 306 | 30.9 | Plus |
Dere\GG23244-PA | 220 | GG23244-PA | 3..218 | 4..224 | 258 | 29 | Plus |
Dere\GG23251-PA | 217 | GG23251-PA | 1..216 | 1..225 | 204 | 29.7 | Plus |
Dere\GG23240-PA | 226 | GG23240-PA | 1..223 | 1..223 | 194 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21503-PA | 226 | GH21503-PA | 1..226 | 1..229 | 800 | 71.6 | Plus |
Dgri\GH21502-PA | 229 | GH21502-PA | 1..224 | 1..223 | 387 | 36.4 | Plus |
Dgri\GH21500-PA | 219 | GH21500-PA | 1..216 | 3..223 | 239 | 28.4 | Plus |
Dgri\GH21494-PA | 226 | GH21494-PA | 1..223 | 1..223 | 231 | 30.7 | Plus |
Dgri\GH21499-PA | 230 | GH21499-PA | 1..228 | 1..224 | 209 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsp42Ei-PB | 229 | CG12843-PB | 1..229 | 1..229 | 1185 | 100 | Plus |
Tsp42Ei-PA | 229 | CG12843-PA | 1..229 | 1..229 | 1185 | 100 | Plus |
Tsp42Eh-PB | 231 | CG12844-PB | 8..226 | 8..223 | 323 | 31.8 | Plus |
Tsp42Ef-PA | 220 | CG12845-PA | 5..218 | 6..224 | 266 | 29 | Plus |
Tsp42El-PA | 217 | CG12840-PA | 1..216 | 1..225 | 239 | 28.1 | Plus |
Tsp42Er-PA | 211 | CG12837-PA | 1..209 | 1..224 | 226 | 26.2 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 1..223 | 1..223 | 218 | 27.6 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 1..223 | 1..223 | 218 | 27.6 | Plus |
Tsp42Ea-PA | 226 | CG18817-PA | 1..223 | 1..223 | 218 | 27.6 | Plus |
Tsp42Ee-PB | 228 | CG10106-PB | 1..226 | 1..224 | 217 | 27.3 | Plus |
Tsp42Ee-PA | 228 | CG10106-PA | 1..226 | 1..224 | 217 | 27.3 | Plus |
Tsp42Ed-PB | 227 | CG12846-PB | 1..226 | 1..225 | 211 | 25.1 | Plus |
Tsp42Ed-PA | 227 | CG12846-PA | 1..226 | 1..225 | 211 | 25.1 | Plus |
Tsp42Eg-PA | 218 | CG12142-PA | 1..213 | 1..224 | 200 | 23 | Plus |
Tsp42En-PB | 218 | CG12839-PB | 8..215 | 8..223 | 192 | 26.4 | Plus |
Tsp42En-PA | 218 | CG12839-PA | 8..215 | 8..223 | 192 | 26.4 | Plus |
Tsp47F-PB | 239 | CG9033-PB | 5..238 | 4..226 | 187 | 25.5 | Plus |
lbm-PB | 208 | CG2374-PB | 1..205 | 1..223 | 156 | 28.1 | Plus |
lbm-PA | 208 | CG2374-PA | 1..205 | 1..223 | 156 | 28.1 | Plus |
CG30160-PA | 222 | CG30160-PA | 9..186 | 9..184 | 146 | 26.6 | Plus |
Tsp42Eb-PB | 222 | CG18816-PB | 9..186 | 9..184 | 146 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19473-PA | 226 | GI19473-PA | 1..226 | 1..229 | 792 | 69 | Plus |
Dmoj\GI19472-PA | 227 | GI19472-PA | 8..222 | 8..223 | 378 | 35.3 | Plus |
Dmoj\GI19470-PA | 220 | GI19470-PA | 14..218 | 15..224 | 224 | 30.5 | Plus |
Dmoj\GI19469-PA | 231 | GI19469-PA | 1..229 | 1..224 | 222 | 28.6 | Plus |
Dmoj\GI19464-PA | 226 | GI19464-PA | 1..225 | 1..225 | 220 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11142-PA | 228 | GL11142-PA | 1..228 | 1..229 | 1024 | 83.8 | Plus |
Dper\GL11143-PA | 225 | GL11143-PA | 2..215 | 5..225 | 343 | 39.1 | Plus |
Dper\GL11141-PA | 231 | GL11141-PA | 1..226 | 1..223 | 311 | 32.6 | Plus |
Dper\GL11133-PA | 226 | GL11133-PA | 1..225 | 1..225 | 234 | 29 | Plus |
Dper\GL11139-PA | 220 | GL11139-PA | 3..218 | 4..224 | 229 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24622-PA | 228 | GA24622-PA | 1..228 | 1..229 | 1024 | 83.8 | Plus |
Dpse\GA24623-PA | 225 | GA24623-PA | 2..215 | 5..225 | 343 | 39.1 | Plus |
Dpse\GA11849-PA | 231 | GA11849-PA | 1..226 | 1..223 | 325 | 33.5 | Plus |
Dpse\GA10076-PA | 228 | GA10076-PA | 1..226 | 1..224 | 236 | 28.7 | Plus |
Dpse\GA15095-PA | 226 | GA15095-PA | 1..225 | 1..225 | 234 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20919-PA | 229 | GM20919-PA | 1..229 | 1..229 | 1161 | 97.8 | Plus |
Dsec\GM20918-PA | 231 | GM20918-PA | 8..226 | 8..223 | 315 | 31.8 | Plus |
Dsec\GM20916-PA | 220 | GM20916-PA | 3..218 | 4..224 | 249 | 27.8 | Plus |
Dsec\GM20924-PA | 217 | GM20924-PA | 1..216 | 1..225 | 198 | 26.8 | Plus |
Dsec\GM20827-PA | 227 | GM20827-PA | 1..226 | 1..225 | 195 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10448-PA | 229 | GD10448-PA | 1..229 | 1..229 | 1158 | 97.8 | Plus |
Dsim\GD10445-PA | 225 | GD10445-PA | 3..223 | 4..224 | 252 | 28 | Plus |
Dsim\GD10447-PA | 233 | GD10447-PA | 8..228 | 8..223 | 237 | 28.1 | Plus |
Dsim\GD10455-PA | 211 | GD10455-PA | 1..209 | 1..224 | 218 | 27.6 | Plus |
Dsim\GD10452-PA | 217 | GD10452-PA | 1..216 | 1..225 | 195 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15134-PA | 226 | GJ15134-PA | 1..226 | 1..229 | 874 | 71.2 | Plus |
Dvir\GJ15133-PA | 229 | GJ15133-PA | 1..224 | 1..223 | 372 | 33.8 | Plus |
Dvir\GJ15124-PA | 226 | GJ15124-PA | 1..225 | 1..225 | 224 | 29.3 | Plus |
Dvir\GJ15130-PA | 220 | GJ15130-PA | 14..218 | 15..224 | 219 | 30.5 | Plus |
Dvir\GJ15128-PA | 230 | GJ15128-PA | 1..228 | 1..224 | 213 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21780-PA | 228 | GK21780-PA | 1..228 | 1..229 | 911 | 80.8 | Plus |
Dwil\GK21779-PA | 231 | GK21779-PA | 8..226 | 7..223 | 320 | 32.7 | Plus |
Dwil\GK21783-PA | 217 | GK21783-PA | 1..216 | 1..225 | 262 | 29.8 | Plus |
Dwil\GK21771-PA | 226 | GK21771-PA | 1..225 | 1..225 | 231 | 29.3 | Plus |
Dwil\GK21776-PA | 228 | GK21776-PA | 1..226 | 1..224 | 219 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19098-PA | 229 | GE19098-PA | 1..229 | 1..229 | 1155 | 96.9 | Plus |
Dyak\GE19097-PA | 223 | GE19097-PA | 8..218 | 8..223 | 256 | 28.2 | Plus |
Dyak\GE19095-PA | 220 | GE19095-PA | 3..218 | 4..224 | 240 | 28.5 | Plus |
Dyak\GE19105-PA | 211 | GE19105-PA | 1..209 | 1..224 | 215 | 26.7 | Plus |
Dyak\GE19101-PA | 217 | GE19101-PA | 1..216 | 1..225 | 203 | 27.6 | Plus |
Translation from 209 to 898
> RE08220.hyp MGLGATTVKHVLLLLNFVFSVLGLALIAFGIFFLISAAENAVSIGKNVAG GLIIALGVVILIIAIFGCLAAIHEAPVRLLIYVGAVVLLILAQLIFLGMS SHGTKDGISGSINEGFDRLWESERNQTGALSYYESWLQCCGVNSSEDYWI IHHGIPSSCCPESKCMDTPSRVFKTGCKAAFVKYLDDKLLVFKIVCWLLV IGEAVGAVFGWLLYSSVKNQSRRNNAVWM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsp42Ei-PB | 229 | CG12843-PB | 1..229 | 1..229 | 1185 | 100 | Plus |
Tsp42Ei-PA | 229 | CG12843-PA | 1..229 | 1..229 | 1185 | 100 | Plus |
Tsp42Eh-PB | 231 | CG12844-PB | 8..226 | 8..223 | 323 | 31.8 | Plus |
Tsp42Ef-PA | 220 | CG12845-PA | 5..218 | 6..224 | 266 | 29 | Plus |
Tsp42El-PA | 217 | CG12840-PA | 1..216 | 1..225 | 239 | 28.1 | Plus |