BDGP Sequence Production Resources |
Search the DGRC for RE08270
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 82 |
Well: | 70 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpS15-RA |
Protein status: | RE08270.pep: gold |
Sequenced Size: | 649 |
Gene | Date | Evidence |
---|---|---|
CG8332 | 2001-12-14 | Blastp of sequenced clone |
CG8332 | 2002-01-01 | Sim4 clustering to Release 2 |
RpS15 | 2008-04-29 | Release 5.5 accounting |
RpS15 | 2008-08-15 | Release 5.9 accounting |
RpS15 | 2008-12-18 | 5.12 accounting |
649 bp (649 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070991
> RE08270.complete GCTTTAAATCTCTTTCCGTTTTTGTGCGCAACCAAAAAAGATGGCCGATC AAGTCGATGAAAATCTGAAGAAGAAGCGTACCTTCAAGAAGTTCACCTAC CGCGGTGTCGACTTGGACCAGCTTCTGGACATGCCCAACAACCAGCTGGT GGAGCTGATGCACAGCCGTGCCCGCAGGCGTTTCTCCCGCGGACTGAAGC GCAAGCCAATGGCTCTGATCAAGAAGCTGCGCAAGGCCAAGAAGGAGGCA CCGCCAAATGAGAAGCCCGAGATTGTCAAGACCCACCTGAGGAACATGAT CATCGTACCCGAGATGACCGGCTCCATCATTGGCGTCTACAACGGCAAGG ACTTCGGACAGGTGGAGGTCAAGCCCGAGATGATCGGTCACTACCTGGGC GAGTTCGCCCTGACCTACAAGCCCGTCAAGCACGGTCGTCCTGGTATCGG TGCCACCCACAGCTCCCGTTTCATTCCTCTGAAGTGAGCGCTGCTCGTCT TTTGGGCTGTTGAGATGAATGATGCGTGAATAAATGAAACGTACTTTTAT AAGAACACACCCCCCTCGTCTGCGTTGCGTTTTCCATCTAATGCTTTTCC AAAAGTAAAGGAGTGGTCGCCACTTAAGAAATGCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 12457348..12457623 | 633..358 | 1365 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 12457859..12458083 | 363..139 | 1125 | 100 | Minus |
chr2R | 21145070 | chr2R | 12458152..12458240 | 138..50 | 445 | 100 | Minus |
chr2R | 21145070 | chr2R | 12458423..12458471 | 49..1 | 245 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 16570113..16570388 | 633..358 | 1380 | 100 | Minus |
2R | 25286936 | 2R | 16570624..16570848 | 363..139 | 1125 | 100 | Minus |
2R | 25286936 | 2R | 16570917..16571005 | 138..50 | 445 | 100 | Minus |
2R | 25286936 | 2R | 16571189..16571237 | 49..1 | 245 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 16571312..16571587 | 633..358 | 1380 | 100 | Minus |
2R | 25260384 | 2R | 16571823..16572047 | 363..139 | 1125 | 100 | Minus |
2R | 25260384 | 2R | 16572116..16572204 | 138..50 | 445 | 100 | Minus |
2R | 25260384 | 2R | 16572388..16572436 | 49..1 | 245 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 12458152..12458240 | 50..138 | 100 | <- | Minus |
chr2R | 12458423..12458471 | 1..49 | 100 | Minus | |
chr2R | 12457347..12457619 | 362..634 | 99 | <- | Minus |
chr2R | 12457861..12458083 | 139..361 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15-RA | 1..447 | 41..487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15-RA | 1..447 | 41..487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15-RA | 1..447 | 41..487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15-RA | 1..447 | 41..487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15-RA | 1..447 | 41..487 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15-RA | 1..633 | 1..634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15-RA | 1..633 | 1..634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15-RA | 1..626 | 8..634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15-RA | 1..633 | 1..634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpS15-RA | 1..626 | 8..634 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16570112..16570384 | 362..634 | 99 | <- | Minus |
2R | 16570626..16570848 | 139..361 | 100 | <- | Minus |
2R | 16570917..16571005 | 50..138 | 100 | <- | Minus |
2R | 16571189..16571237 | 1..49 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16570112..16570384 | 362..634 | 99 | <- | Minus |
2R | 16570626..16570848 | 139..361 | 100 | <- | Minus |
2R | 16570917..16571005 | 50..138 | 100 | <- | Minus |
2R | 16571189..16571237 | 1..49 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16570112..16570384 | 362..634 | 99 | <- | Minus |
2R | 16570626..16570848 | 139..361 | 100 | <- | Minus |
2R | 16570917..16571005 | 50..138 | 100 | <- | Minus |
2R | 16571189..16571237 | 1..49 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 12457617..12457889 | 362..634 | 99 | <- | Minus |
arm_2R | 12458131..12458353 | 139..361 | 100 | <- | Minus |
arm_2R | 12458422..12458510 | 50..138 | 100 | <- | Minus |
arm_2R | 12458694..12458742 | 1..49 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 16572116..16572204 | 50..138 | 100 | <- | Minus |
2R | 16572388..16572436 | 1..49 | 100 | Minus | |
2R | 16571825..16572047 | 139..361 | 100 | <- | Minus |
2R | 16571311..16571583 | 362..634 | 99 | <- | Minus |
Translation from 40 to 486
> RE08270.pep MADQVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSR GLKRKPMALIKKLRKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVY NGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11258-PA | 148 | GF11258-PA | 1..148 | 1..148 | 775 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22261-PA | 148 | GG22261-PA | 1..148 | 1..148 | 775 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20641-PA | 148 | GH20641-PA | 1..148 | 1..148 | 770 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpS15-PA | 148 | CG8332-PA | 1..148 | 1..148 | 769 | 100 | Plus |
RpS15-PB | 147 | CG8332-PB | 3..147 | 4..148 | 754 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19004-PA | 148 | GI19004-PA | 1..148 | 1..148 | 770 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11338-PA | 148 | GL11338-PA | 1..148 | 1..148 | 766 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20995-PA | 148 | GA20995-PA | 1..148 | 1..148 | 766 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20051-PA | 148 | GM20051-PA | 1..148 | 1..148 | 771 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25532-PA | 148 | GD25532-PA | 1..148 | 1..148 | 771 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19970-PA | 148 | GJ19970-PA | 1..148 | 1..148 | 770 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21598-PA | 145 | GK21598-PA | 2..145 | 5..148 | 731 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14054-PA | 148 | GE14054-PA | 1..148 | 1..148 | 775 | 100 | Plus |
Translation from 40 to 486
> RE08270.hyp MADQVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSR GLKRKPMALIKKLRKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVY NGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK*