Clone RE08517 Report

Search the DGRC for RE08517

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:85
Well:17
Vector:pFlc-1
Associated Gene/Transcriptslim-RA
Protein status:RE08517.pep: gold
Preliminary Size:3095
Sequenced Size:3105

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5186 2002-12-10 Blastp of sequenced clone
CG5186 2003-01-01 Sim4 clustering to Release 3
slim 2008-04-29 Release 5.5 accounting
slim 2008-08-15 Release 5.9 accounting
slim 2008-12-18 5.12 accounting

Clone Sequence Records

RE08517.complete Sequence

3105 bp (3105 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003216

> RE08517.complete
AGTTATCGATAATTCCACGGCCACACTGCTCAAATGTTCAGTTCTAAATT
TAAAGCGTAGTTTGTCGCACACGAAACGATGCGCGAGTGTAATCGACTGC
AATAATTAAACAAATCGGCAGCGTGCCACAACTAGTGAAATTGCAATAGC
CTAGCGGGGAAAATTGACGAGCAGTTGAATTAGCAAAGGAACAAACATTT
TCACAAACCACGTAACGTAACACATGTGGGTGCGTGTGTGTGTGGGTGCG
AGCGAGAGGCAGTGTGTGTCAAAATGACAGCAGTAGCAACAACAACAATA
GAAACAGAAGCAGCAGAAATCAAATGAACAACAACAGCTTAGTTAACCAG
CTGTGCGAGGTCGCTTCAGACCCTCCTCCCACCTTTCCCACAGAAAACTG
AAAAACCAAAACCACATTTGACAAAAGTAACAAAATTGTTCTGTTCCCTG
TGGCAGGCAAGATCAAGCACCAAATTGTTAGTTACGTTATCAAAACTCAA
AACTCATCGAGAGTGTTATGAACATACTAAATCCAGGCAAATTCAAGTGT
ATCGTATTTGACCAACTGCGTCACACTTGGACATTTCTTTTGTTTATCTG
CGACTTCCTGGCGAAGATTTACAGGACGCCTCGTATAACTGCCCACCAGG
AGCAGCTGGCCAACCATAATAATAACAACAACAATAATAACGATCTGATC
ATGGAACAGGACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGCTCT
GCCGCAGCAGGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTCAGG
CTGCCGTGGAGCTCATGGACGCAGCCAGCGATTTGGACGAGGAAGAGGAG
GAAGAAGACGACGACGTGGACGTGGATGTGGACTACGGCGATACAGATTC
GGAGTCAGAATTCGAAGAGATGTACTCCGACGAGTGGACCAGTTCCAGCG
ATGAGCTGGACGAGGGTACAGAGCTATCTAAGAGTGTCTTGAATGTCTTC
CTCTCGTCGGATAAACAGCAATCTCAAATGGCCGGACAGATTCCCATGTA
CGCCTTCCAGCCGTTGCGTCTCGTCAAGTGCCAGTACAGGGATAAACATA
TACCCGGTGGATTCCCTCTGGCACGCAGTGGCCACCGGATCATTGCCTCC
AATTCGCATCTGTATTCCCTGGGTGGCTACAATCCGCGGAGCGCCATGTC
TGCATCACGCCACGGCCGATGTCTTCTCTTCCAGGAGCTGTGGAGCTACA
ACTTTGCCACGAGAACCTGGAGGCTGGAGCTGAATGCGGGCAATGCCGCC
AATATGCCCGTGGAGCTGGCCTCCAATGCATTGACCATTCACAATAACGT
GTTGATTTCTCATGGCGGCACTGGTTATCCATTTGGAGTATCCTGCTCCA
ACGACTGTTACGTTTACCGAACGGCCAGCGCTGGCGCGACACCGGGCGTG
GATCGCCTCCAGGTTAAGGGTGACCTGCCCACGGCTCAGTACGGACCGGG
AATAGTGATCCACAAGCACTTCCTCTACACAATCGGCGGAACGACGGGAT
TTGATTACACTTGTGATGTTTATCGTTTGGATTTGCGCACCGGTATATGG
GAGAATGTGTACATAAGTCGTCCGGAGATGCGAGACGACCCAGAAGGGCG
CTACCGTCACGAGGTCGTTTATGATGGCAAGCACATCTTTGTGCTGGGCG
GCGGCACATCGCACTCTGTATACGATTTGCAGCGCATTCCGGCTTACAAC
CTGGAGGCGAACTGCTGGGATTACTTTGAAACGTATCCCGATCAGCGTGC
AGCTGATGCGGACGACGGCAACAGAGGCTATCCAAAGCCGCGCAAGTGCT
TTTCCTGTGTGCAGCACCAGTCCTCCACTGGGGACATCGAGGCTTTCATC
ACGGGCGGTCTGCAAGGCGACTTCTCCACATATTTTTCGGACATCTGGAA
GCTTAATCTGCGCACTAAGCATTGGTATCGCATCGAGACCGCCATCCTGC
CCCGCCCCCTTTACTTCCACTCGGCGGCCCACTCCGATAATGGATGCATG
TACGTATTCGGAGGCATCGAGTACATTGACAAGGAGATGCGCCGCCGCAA
CGATCTGTATAAGATGTGGATGACAGTGCCCAAACTGAGCGAAATGTGCT
GGGACGCCATCACATACTATAACGACAATCTTGATTTGTACGACCGAAAA
ACGCTACTGGAAGCCGGTATACCGAAACGTTTTACGGAACGCCTGCCGCC
GCAGCGCAGGAGGCGTTTGGACACGAGCCAGCCAGACCCGTCCATGCTAA
TTTCGCTGTACTCGAACCCGAAACGTGCCCGCTCCTCGACGCAATAGGCC
TGTTACTGTTCCCACAAAAATAAATCGAAATCAAGGAGGGTAGCGGACCC
ATACTCGAAACTCTTTCAGTTGCAGAACTTTATGTTATCATTCTTTTAAA
GTTTTGTTTCACATTGAGCGCGCGCTGTGATCGAACATGAAGATAATATA
TATCGAATATATAGTTGTACACATGTGTATTTTTATACTTGTGTTTCCTA
TGCGGACATGTTTAGCATGTAAATAAGAGTGTAATTAAGTTTAGCTAGCA
CAACAACAGCCAGATACAAGCCATGCGTATGTATTCTAAACTTCAGCTTA
CAGATCAGCCAGCGCACCGCGAAAACGGAGCATCGGAAAAATTCGCTATA
AATCTATAAATCTTTTACCTGGTCCTCAAATCTTACTTGCTATATCGAAA
CACGGCCCTGATATAATGTTTCACCCTCATTAAATCCAACACACATCCCA
CTTTGCACCCAAACAAAACAAAACAAAACAAACAAACCCATAATGAAAGG
CTACACCAAACAATGTCATATAGAGGGGGGACATCCCCGATGTATTTTTG
TCAAAGTGTACATAATACTTAGCGGTAGTAATATTTAATTAACAATAAGA
CTCCATCAATATTGCGATATCATGTACCATGCAGTACGTAGGCTACTGCT
CGCCCCCGTGGCGAACGTTGGTTTGCTCGGTTTACATTACCCAAGACTAA
ATTTGGTTGAATCTAAGTTAATAAATAAATTTCTAATGCAAAAAAAAAAA
AAAAA

RE08517.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
slim.b 3735 slim.b 165..3255 1..3091 15455 100 Plus
slim-RA 3354 slim-RA 165..3255 1..3091 15455 100 Plus
slim.a 3024 slim.a 477..3020 548..3091 12720 100 Plus
slim.a 3024 slim.a 1..476 1..476 2380 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14328056..14329412 1..1357 6770 99.9 Plus
chr2R 21145070 chr2R 14331447..14332605 1911..3089 5530 98.1 Plus
chr2R 21145070 chr2R 14330754..14331312 1358..1916 2750 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:30:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18440957..18442313 1..1357 6785 100 Plus
2R 25286936 2R 18444348..18445528 1911..3091 5890 99.9 Plus
2R 25286936 2R 18443655..18444213 1358..1916 2795 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18442156..18443512 1..1357 6785 100 Plus
2R 25260384 2R 18445547..18446727 1911..3091 5890 99.9 Plus
2R 25260384 2R 18444854..18445412 1358..1916 2795 100 Plus
Blast to na_te.dros performed 2019-03-16 14:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1102..1171 277..346 179 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2443 277..339 153 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2339..2403 271..338 144 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2388 278..338 143 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6859..6924 277..339 142 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2404..2466 273..338 134 69.7 Plus
roo 9092 roo DM_ROO 9092bp 1067..1130 278..338 133 70.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2826 272..338 128 65.7 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6056..6097 278..318 126 81 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 22..50 662..690 118 89.7 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7060..7088 662..690 118 89.7 Plus

RE08517.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:54:38 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14328056..14328327 1..272 99 == Plus
chr2R 14328394..14329412 339..1357 100 -> Plus
chr2R 14330754..14331311 1358..1915 99 -> Plus
chr2R 14331452..14332310 1916..2774 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:51:21 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RB 10..1884 473..2347 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:49:40 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RB 10..1884 473..2347 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:58 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 1..1830 518..2347 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:31:45 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RB 10..1884 473..2347 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:37:49 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 1..1830 518..2347 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:00:12 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 1..3089 1..3089 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:49:40 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 1..3089 1..3089 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:58 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 1..3081 9..3089 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:31:45 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 1..3089 1..3089 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:49 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 1..3081 9..3089 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:54:38 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18440957..18442313 1..1357 100 -> Plus
2R 18443655..18444212 1358..1915 100 -> Plus
2R 18444353..18445526 1916..3089 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:54:38 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18440957..18442313 1..1357 100 -> Plus
2R 18443655..18444212 1358..1915 100 -> Plus
2R 18444353..18445526 1916..3089 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:54:38 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18440957..18442313 1..1357 100 -> Plus
2R 18443655..18444212 1358..1915 100 -> Plus
2R 18444353..18445526 1916..3089 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:58 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14328462..14329818 1..1357 100 -> Plus
arm_2R 14331160..14331717 1358..1915 100 -> Plus
arm_2R 14331858..14333031 1916..3089 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:11:05 Download gff for RE08517.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18442156..18443512 1..1357 100 -> Plus
2R 18444854..18445411 1358..1915 100 -> Plus
2R 18445552..18446725 1916..3089 100   Plus

RE08517.pep Sequence

Translation from 517 to 2346

> RE08517.pep
MNILNPGKFKCIVFDQLRHTWTFLLFICDFLAKIYRTPRITAHQEQLANH
NNNNNNNNDLIMEQDMPEEEVGQPEEALPQQDNGEVVDRFNAIQAAVELM
DAASDLDEEEEEEDDDVDVDVDYGDTDSESEFEEMYSDEWTSSSDELDEG
TELSKSVLNVFLSSDKQQSQMAGQIPMYAFQPLRLVKCQYRDKHIPGGFP
LARSGHRIIASNSHLYSLGGYNPRSAMSASRHGRCLLFQELWSYNFATRT
WRLELNAGNAANMPVELASNALTIHNNVLISHGGTGYPFGVSCSNDCYVY
RTASAGATPGVDRLQVKGDLPTAQYGPGIVIHKHFLYTIGGTTGFDYTCD
VYRLDLRTGIWENVYISRPEMRDDPEGRYRHEVVYDGKHIFVLGGGTSHS
VYDLQRIPAYNLEANCWDYFETYPDQRAADADDGNRGYPKPRKCFSCVQH
QSSTGDIEAFITGGLQGDFSTYFSDIWKLNLRTKHWYRIETAILPRPLYF
HSAAHSDNGCMYVFGGIEYIDKEMRRRNDLYKMWMTVPKLSEMCWDAITY
YNDNLDLYDRKTLLEAGIPKRFTERLPPQRRRRLDTSQPDPSMLISLYSN
PKRARSSTQ*

RE08517.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11964-PA 611 GF11964-PA 1..611 1..609 2442 80.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21896-PA 609 GG21896-PA 1..609 1..609 2849 93.3 Plus
Dere\GG16387-PA 1500 GG16387-PA 115..351 316..549 159 26.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21675-PA 613 GH21675-PA 1..613 1..609 2075 66.6 Plus
Dgri\GH23616-PA 1572 GH23616-PA 110..351 316..559 160 25.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
slim-PC 609 CG5186-PC 1..609 1..609 3295 100 Plus
slim-PA 609 CG5186-PA 1..609 1..609 3295 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20128-PA 608 GI20128-PA 1..608 1..609 2023 67 Plus
Dmoj\GI14089-PA 1536 GI14089-PA 121..362 316..559 159 25.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17778-PA 606 GL17778-PA 1..606 1..609 2197 70.6 Plus
Dper\GL18169-PA 1461 GL18169-PA 115..356 316..559 162 26.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18720-PA 609 GA18720-PA 1..609 1..609 2218 71.5 Plus
Dpse\GA14323-PA 1523 GA14323-PA 115..356 316..559 161 26.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21887-PA 545 GM21887-PA 1..545 62..609 2860 96.7 Plus
Dsec\GM26794-PA 822 GM26794-PA 115..351 316..549 160 26.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11384-PA 329 GD11384-PA 1..329 281..609 1785 98.8 Plus
Dsim\GD11379-PA 296 GD11379-PA 1..278 1..280 1181 94.3 Plus
Dsim\GD24404-PA 487 GD24404-PA 11..247 316..549 162 26.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19899-PA 596 GJ19899-PA 1..596 1..609 2044 67.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22999-PA 627 GK22999-PA 1..625 1..607 2048 67.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11971-PA 611 GE11971-PA 1..611 1..609 2921 94.3 Plus
Dyak\GE14548-PA 1503 GE14548-PA 115..351 316..549 160 26.8 Plus

RE08517.hyp Sequence

Translation from 517 to 2346

> RE08517.hyp
MNILNPGKFKCIVFDQLRHTWTFLLFICDFLAKIYRTPRITAHQEQLANH
NNNNNNNNDLIMEQDMPEEEVGQPEEALPQQDNGEVVDRFNAIQAAVELM
DAASDLDEEEEEEDDDVDVDVDYGDTDSESEFEEMYSDEWTSSSDELDEG
TELSKSVLNVFLSSDKQQSQMAGQIPMYAFQPLRLVKCQYRDKHIPGGFP
LARSGHRIIASNSHLYSLGGYNPRSAMSASRHGRCLLFQELWSYNFATRT
WRLELNAGNAANMPVELASNALTIHNNVLISHGGTGYPFGVSCSNDCYVY
RTASAGATPGVDRLQVKGDLPTAQYGPGIVIHKHFLYTIGGTTGFDYTCD
VYRLDLRTGIWENVYISRPEMRDDPEGRYRHEVVYDGKHIFVLGGGTSHS
VYDLQRIPAYNLEANCWDYFETYPDQRAADADDGNRGYPKPRKCFSCVQH
QSSTGDIEAFITGGLQGDFSTYFSDIWKLNLRTKHWYRIETAILPRPLYF
HSAAHSDNGCMYVFGGIEYIDKEMRRRNDLYKMWMTVPKLSEMCWDAITY
YNDNLDLYDRKTLLEAGIPKRFTERLPPQRRRRLDTSQPDPSMLISLYSN
PKRARSSTQ*

RE08517.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
slim-PC 609 CG5186-PC 1..609 1..609 3295 100 Plus
slim-PA 609 CG5186-PA 1..609 1..609 3295 100 Plus