BDGP Sequence Production Resources |
Search the DGRC for RE08517
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 85 |
Well: | 17 |
Vector: | pFlc-1 |
Associated Gene/Transcript | slim-RA |
Protein status: | RE08517.pep: gold |
Preliminary Size: | 3095 |
Sequenced Size: | 3105 |
Gene | Date | Evidence |
---|---|---|
CG5186 | 2002-12-10 | Blastp of sequenced clone |
CG5186 | 2003-01-01 | Sim4 clustering to Release 3 |
slim | 2008-04-29 | Release 5.5 accounting |
slim | 2008-08-15 | Release 5.9 accounting |
slim | 2008-12-18 | 5.12 accounting |
3105 bp (3105 high quality bases) assembled on 2002-12-10
GenBank Submission: BT003216
> RE08517.complete AGTTATCGATAATTCCACGGCCACACTGCTCAAATGTTCAGTTCTAAATT TAAAGCGTAGTTTGTCGCACACGAAACGATGCGCGAGTGTAATCGACTGC AATAATTAAACAAATCGGCAGCGTGCCACAACTAGTGAAATTGCAATAGC CTAGCGGGGAAAATTGACGAGCAGTTGAATTAGCAAAGGAACAAACATTT TCACAAACCACGTAACGTAACACATGTGGGTGCGTGTGTGTGTGGGTGCG AGCGAGAGGCAGTGTGTGTCAAAATGACAGCAGTAGCAACAACAACAATA GAAACAGAAGCAGCAGAAATCAAATGAACAACAACAGCTTAGTTAACCAG CTGTGCGAGGTCGCTTCAGACCCTCCTCCCACCTTTCCCACAGAAAACTG AAAAACCAAAACCACATTTGACAAAAGTAACAAAATTGTTCTGTTCCCTG TGGCAGGCAAGATCAAGCACCAAATTGTTAGTTACGTTATCAAAACTCAA AACTCATCGAGAGTGTTATGAACATACTAAATCCAGGCAAATTCAAGTGT ATCGTATTTGACCAACTGCGTCACACTTGGACATTTCTTTTGTTTATCTG CGACTTCCTGGCGAAGATTTACAGGACGCCTCGTATAACTGCCCACCAGG AGCAGCTGGCCAACCATAATAATAACAACAACAATAATAACGATCTGATC ATGGAACAGGACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGCTCT GCCGCAGCAGGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTCAGG CTGCCGTGGAGCTCATGGACGCAGCCAGCGATTTGGACGAGGAAGAGGAG GAAGAAGACGACGACGTGGACGTGGATGTGGACTACGGCGATACAGATTC GGAGTCAGAATTCGAAGAGATGTACTCCGACGAGTGGACCAGTTCCAGCG ATGAGCTGGACGAGGGTACAGAGCTATCTAAGAGTGTCTTGAATGTCTTC CTCTCGTCGGATAAACAGCAATCTCAAATGGCCGGACAGATTCCCATGTA CGCCTTCCAGCCGTTGCGTCTCGTCAAGTGCCAGTACAGGGATAAACATA TACCCGGTGGATTCCCTCTGGCACGCAGTGGCCACCGGATCATTGCCTCC AATTCGCATCTGTATTCCCTGGGTGGCTACAATCCGCGGAGCGCCATGTC TGCATCACGCCACGGCCGATGTCTTCTCTTCCAGGAGCTGTGGAGCTACA ACTTTGCCACGAGAACCTGGAGGCTGGAGCTGAATGCGGGCAATGCCGCC AATATGCCCGTGGAGCTGGCCTCCAATGCATTGACCATTCACAATAACGT GTTGATTTCTCATGGCGGCACTGGTTATCCATTTGGAGTATCCTGCTCCA ACGACTGTTACGTTTACCGAACGGCCAGCGCTGGCGCGACACCGGGCGTG GATCGCCTCCAGGTTAAGGGTGACCTGCCCACGGCTCAGTACGGACCGGG AATAGTGATCCACAAGCACTTCCTCTACACAATCGGCGGAACGACGGGAT TTGATTACACTTGTGATGTTTATCGTTTGGATTTGCGCACCGGTATATGG GAGAATGTGTACATAAGTCGTCCGGAGATGCGAGACGACCCAGAAGGGCG CTACCGTCACGAGGTCGTTTATGATGGCAAGCACATCTTTGTGCTGGGCG GCGGCACATCGCACTCTGTATACGATTTGCAGCGCATTCCGGCTTACAAC CTGGAGGCGAACTGCTGGGATTACTTTGAAACGTATCCCGATCAGCGTGC AGCTGATGCGGACGACGGCAACAGAGGCTATCCAAAGCCGCGCAAGTGCT TTTCCTGTGTGCAGCACCAGTCCTCCACTGGGGACATCGAGGCTTTCATC ACGGGCGGTCTGCAAGGCGACTTCTCCACATATTTTTCGGACATCTGGAA GCTTAATCTGCGCACTAAGCATTGGTATCGCATCGAGACCGCCATCCTGC CCCGCCCCCTTTACTTCCACTCGGCGGCCCACTCCGATAATGGATGCATG TACGTATTCGGAGGCATCGAGTACATTGACAAGGAGATGCGCCGCCGCAA CGATCTGTATAAGATGTGGATGACAGTGCCCAAACTGAGCGAAATGTGCT GGGACGCCATCACATACTATAACGACAATCTTGATTTGTACGACCGAAAA ACGCTACTGGAAGCCGGTATACCGAAACGTTTTACGGAACGCCTGCCGCC GCAGCGCAGGAGGCGTTTGGACACGAGCCAGCCAGACCCGTCCATGCTAA TTTCGCTGTACTCGAACCCGAAACGTGCCCGCTCCTCGACGCAATAGGCC TGTTACTGTTCCCACAAAAATAAATCGAAATCAAGGAGGGTAGCGGACCC ATACTCGAAACTCTTTCAGTTGCAGAACTTTATGTTATCATTCTTTTAAA GTTTTGTTTCACATTGAGCGCGCGCTGTGATCGAACATGAAGATAATATA TATCGAATATATAGTTGTACACATGTGTATTTTTATACTTGTGTTTCCTA TGCGGACATGTTTAGCATGTAAATAAGAGTGTAATTAAGTTTAGCTAGCA CAACAACAGCCAGATACAAGCCATGCGTATGTATTCTAAACTTCAGCTTA CAGATCAGCCAGCGCACCGCGAAAACGGAGCATCGGAAAAATTCGCTATA AATCTATAAATCTTTTACCTGGTCCTCAAATCTTACTTGCTATATCGAAA CACGGCCCTGATATAATGTTTCACCCTCATTAAATCCAACACACATCCCA CTTTGCACCCAAACAAAACAAAACAAAACAAACAAACCCATAATGAAAGG CTACACCAAACAATGTCATATAGAGGGGGGACATCCCCGATGTATTTTTG TCAAAGTGTACATAATACTTAGCGGTAGTAATATTTAATTAACAATAAGA CTCCATCAATATTGCGATATCATGTACCATGCAGTACGTAGGCTACTGCT CGCCCCCGTGGCGAACGTTGGTTTGCTCGGTTTACATTACCCAAGACTAA ATTTGGTTGAATCTAAGTTAATAAATAAATTTCTAATGCAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
slim.b | 3735 | slim.b | 165..3255 | 1..3091 | 15455 | 100 | Plus |
slim-RA | 3354 | slim-RA | 165..3255 | 1..3091 | 15455 | 100 | Plus |
slim.a | 3024 | slim.a | 477..3020 | 548..3091 | 12720 | 100 | Plus |
slim.a | 3024 | slim.a | 1..476 | 1..476 | 2380 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 14328056..14329412 | 1..1357 | 6770 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 14331447..14332605 | 1911..3089 | 5530 | 98.1 | Plus |
chr2R | 21145070 | chr2R | 14330754..14331312 | 1358..1916 | 2750 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 18440957..18442313 | 1..1357 | 6785 | 100 | Plus |
2R | 25286936 | 2R | 18444348..18445528 | 1911..3091 | 5890 | 99.9 | Plus |
2R | 25286936 | 2R | 18443655..18444213 | 1358..1916 | 2795 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 18442156..18443512 | 1..1357 | 6785 | 100 | Plus |
2R | 25260384 | 2R | 18445547..18446727 | 1911..3091 | 5890 | 99.9 | Plus |
2R | 25260384 | 2R | 18444854..18445412 | 1358..1916 | 2795 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 1102..1171 | 277..346 | 179 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2443 | 277..339 | 153 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2339..2403 | 271..338 | 144 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2388 | 278..338 | 143 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6859..6924 | 277..339 | 142 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2404..2466 | 273..338 | 134 | 69.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1130 | 278..338 | 133 | 70.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2760..2826 | 272..338 | 128 | 65.7 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6056..6097 | 278..318 | 126 | 81 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..50 | 662..690 | 118 | 89.7 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7088 | 662..690 | 118 | 89.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 14328056..14328327 | 1..272 | 99 | == | Plus |
chr2R | 14328394..14329412 | 339..1357 | 100 | -> | Plus |
chr2R | 14330754..14331311 | 1358..1915 | 99 | -> | Plus |
chr2R | 14331452..14332310 | 1916..2774 | 99 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
slim-RB | 10..1884 | 473..2347 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
slim-RB | 10..1884 | 473..2347 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
slim-RA | 1..1830 | 518..2347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
slim-RB | 10..1884 | 473..2347 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
slim-RA | 1..1830 | 518..2347 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
slim-RA | 1..3089 | 1..3089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
slim-RA | 1..3089 | 1..3089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
slim-RA | 1..3081 | 9..3089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
slim-RA | 1..3089 | 1..3089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
slim-RA | 1..3081 | 9..3089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18440957..18442313 | 1..1357 | 100 | -> | Plus |
2R | 18443655..18444212 | 1358..1915 | 100 | -> | Plus |
2R | 18444353..18445526 | 1916..3089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18440957..18442313 | 1..1357 | 100 | -> | Plus |
2R | 18443655..18444212 | 1358..1915 | 100 | -> | Plus |
2R | 18444353..18445526 | 1916..3089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18440957..18442313 | 1..1357 | 100 | -> | Plus |
2R | 18443655..18444212 | 1358..1915 | 100 | -> | Plus |
2R | 18444353..18445526 | 1916..3089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 14328462..14329818 | 1..1357 | 100 | -> | Plus |
arm_2R | 14331160..14331717 | 1358..1915 | 100 | -> | Plus |
arm_2R | 14331858..14333031 | 1916..3089 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 18442156..18443512 | 1..1357 | 100 | -> | Plus |
2R | 18444854..18445411 | 1358..1915 | 100 | -> | Plus |
2R | 18445552..18446725 | 1916..3089 | 100 | Plus |
Translation from 517 to 2346
> RE08517.pep MNILNPGKFKCIVFDQLRHTWTFLLFICDFLAKIYRTPRITAHQEQLANH NNNNNNNNDLIMEQDMPEEEVGQPEEALPQQDNGEVVDRFNAIQAAVELM DAASDLDEEEEEEDDDVDVDVDYGDTDSESEFEEMYSDEWTSSSDELDEG TELSKSVLNVFLSSDKQQSQMAGQIPMYAFQPLRLVKCQYRDKHIPGGFP LARSGHRIIASNSHLYSLGGYNPRSAMSASRHGRCLLFQELWSYNFATRT WRLELNAGNAANMPVELASNALTIHNNVLISHGGTGYPFGVSCSNDCYVY RTASAGATPGVDRLQVKGDLPTAQYGPGIVIHKHFLYTIGGTTGFDYTCD VYRLDLRTGIWENVYISRPEMRDDPEGRYRHEVVYDGKHIFVLGGGTSHS VYDLQRIPAYNLEANCWDYFETYPDQRAADADDGNRGYPKPRKCFSCVQH QSSTGDIEAFITGGLQGDFSTYFSDIWKLNLRTKHWYRIETAILPRPLYF HSAAHSDNGCMYVFGGIEYIDKEMRRRNDLYKMWMTVPKLSEMCWDAITY YNDNLDLYDRKTLLEAGIPKRFTERLPPQRRRRLDTSQPDPSMLISLYSN PKRARSSTQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11964-PA | 611 | GF11964-PA | 1..611 | 1..609 | 2442 | 80.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21896-PA | 609 | GG21896-PA | 1..609 | 1..609 | 2849 | 93.3 | Plus |
Dere\GG16387-PA | 1500 | GG16387-PA | 115..351 | 316..549 | 159 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21675-PA | 613 | GH21675-PA | 1..613 | 1..609 | 2075 | 66.6 | Plus |
Dgri\GH23616-PA | 1572 | GH23616-PA | 110..351 | 316..559 | 160 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
slim-PC | 609 | CG5186-PC | 1..609 | 1..609 | 3295 | 100 | Plus |
slim-PA | 609 | CG5186-PA | 1..609 | 1..609 | 3295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20128-PA | 608 | GI20128-PA | 1..608 | 1..609 | 2023 | 67 | Plus |
Dmoj\GI14089-PA | 1536 | GI14089-PA | 121..362 | 316..559 | 159 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17778-PA | 606 | GL17778-PA | 1..606 | 1..609 | 2197 | 70.6 | Plus |
Dper\GL18169-PA | 1461 | GL18169-PA | 115..356 | 316..559 | 162 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18720-PA | 609 | GA18720-PA | 1..609 | 1..609 | 2218 | 71.5 | Plus |
Dpse\GA14323-PA | 1523 | GA14323-PA | 115..356 | 316..559 | 161 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21887-PA | 545 | GM21887-PA | 1..545 | 62..609 | 2860 | 96.7 | Plus |
Dsec\GM26794-PA | 822 | GM26794-PA | 115..351 | 316..549 | 160 | 26.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11384-PA | 329 | GD11384-PA | 1..329 | 281..609 | 1785 | 98.8 | Plus |
Dsim\GD11379-PA | 296 | GD11379-PA | 1..278 | 1..280 | 1181 | 94.3 | Plus |
Dsim\GD24404-PA | 487 | GD24404-PA | 11..247 | 316..549 | 162 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19899-PA | 596 | GJ19899-PA | 1..596 | 1..609 | 2044 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22999-PA | 627 | GK22999-PA | 1..625 | 1..607 | 2048 | 67.1 | Plus |
Translation from 517 to 2346
> RE08517.hyp MNILNPGKFKCIVFDQLRHTWTFLLFICDFLAKIYRTPRITAHQEQLANH NNNNNNNNDLIMEQDMPEEEVGQPEEALPQQDNGEVVDRFNAIQAAVELM DAASDLDEEEEEEDDDVDVDVDYGDTDSESEFEEMYSDEWTSSSDELDEG TELSKSVLNVFLSSDKQQSQMAGQIPMYAFQPLRLVKCQYRDKHIPGGFP LARSGHRIIASNSHLYSLGGYNPRSAMSASRHGRCLLFQELWSYNFATRT WRLELNAGNAANMPVELASNALTIHNNVLISHGGTGYPFGVSCSNDCYVY RTASAGATPGVDRLQVKGDLPTAQYGPGIVIHKHFLYTIGGTTGFDYTCD VYRLDLRTGIWENVYISRPEMRDDPEGRYRHEVVYDGKHIFVLGGGTSHS VYDLQRIPAYNLEANCWDYFETYPDQRAADADDGNRGYPKPRKCFSCVQH QSSTGDIEAFITGGLQGDFSTYFSDIWKLNLRTKHWYRIETAILPRPLYF HSAAHSDNGCMYVFGGIEYIDKEMRRRNDLYKMWMTVPKLSEMCWDAITY YNDNLDLYDRKTLLEAGIPKRFTERLPPQRRRRLDTSQPDPSMLISLYSN PKRARSSTQ*