Clone RE08669 Report

Search the DGRC for RE08669

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:86
Well:69
Vector:pFlc-1
Associated Gene/TranscriptRpL6-RB
Protein status:RE08669.pep: gold
Preliminary Size:1560
Sequenced Size:1024

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11522 2001-12-14 Blastp of sequenced clone
CG11522 2002-01-01 Sim4 clustering to Release 2
CG11522 2003-01-01 Sim4 clustering to Release 3
RpL6 2008-04-29 Release 5.5 accounting
RpL6 2008-08-15 Release 5.9 accounting
RpL6 2008-12-18 5.12 accounting

Clone Sequence Records

RE08669.complete Sequence

1024 bp (1024 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070994

> RE08669.complete
ATTTTTGTATCGACCGCCCTGGTCACACCGCTCTAGACATAACCTTCCTT
TTCCAATAATTTTTGTGCTGTGTACACGTGTTTCACAATGGCACCCATCG
AGAAAGCTAAAAAGGTGGCCAAGTCGGCCAAAAAGGGCAAGAAGCACCCC
GTCAACTCCTACCTGAAGGGCGGTATCCTGCGTTACTCCAAGGCCCAGAT
GTACAAGCGTCGTGCTCTGTACCGCCTGAAGGACAAGAAGAGCCCCGTCG
TGGAGAAGGCCAAGGTGCCCATCAAGAAGGTGAAGAAGATCGGAGGACCC
AAGAACGGCGGTGAGCGCACGGTCTTCCTGAAGAAGAGCAAGGCCTCCTA
CCCGACCAAGACGTTCGTGAAGAAGCGCCCCTCCAAGGCAAACTTCAGCG
AGCACAAACGCAACACGCGCCGCAACCTGACCCCCGGAACCGTGCTCATC
CTGCTGGCCGGACGCCACCAGGGCAAGCGCGTCGTCCTGTTGAAGGTCTT
GGCCTCCGGACTCCTGCTGGTCACCGGACCCTTCGCCCTCAACTCGTGCC
CGCTGCGTCGCGTGTCCCAGCGCTACGTGATCGGCACCTCCTCGAAGGTG
GATCTCGGTGCCTTCAAGGTGCCCGAGCACCTGAACGACGCCTACTTCCG
CCGTCTGAAGGCTAAGAAGGACAAGAAGACCGGCGAGGCCGACATCTTCG
CGGCCAAGAAGGAGCGCTTCGTGCCCAACGAGCAGCGCAAGAAGGACCAG
AAGGAGGTGGACGCCGCCCTGCTGAAGGTCATCAAGGCCCATCCCGAGGG
CAAGTTCTTCGCCAAGTACTTGCAGAACATGTTTGCCCTGCACTCCTCCC
AATACCCCCACCGCATGCGATTCTAAGCGAGGGGATGGATTTGGTTCTTC
AGTTTAAGGATTTCTAAAGCAAAAACACTGTACAAGCGCGCCCGCTGGTT
AGACTAACAGGATTTGTAAAATAAACCTTACAAAACGGAAAGTTTTGGCC
TTTTCACCAAAAAAAAAAAAAAAA

RE08669.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-RB 1282 RpL6-RB 104..1114 1..1011 5040 99.9 Plus
RpL6-RA 1208 RpL6-RA 377..1057 331..1011 3390 99.8 Plus
RpL6-RA 1208 RpL6-RA 104..382 1..279 1395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27417153..27417963 1006..196 3995 99.5 Minus
chr3R 27901430 chr3R 27418407..27418604 198..1 990 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:31:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31594789..31595604 1011..196 4065 99.9 Minus
3R 32079331 3R 31596048..31596245 198..1 990 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31335620..31336435 1011..196 4065 99.8 Minus
3R 31820162 3R 31336879..31337076 198..1 990 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:46:58 has no hits.

RE08669.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:47:50 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27417151..27417960 199..1008 99 <- Minus
chr3R 27418407..27418604 1..198 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:51:27 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 1..789 88..876 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:03:58 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 1..789 88..876 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:14 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 1..789 88..876 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:28:34 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 1..789 88..876 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:40 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 1..789 88..876 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:31:17 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 1..1008 1..1008 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:03:58 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 1..1008 1..1008 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:14 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 1..967 42..1008 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:28:34 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 1..1008 1..1008 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:40 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
RpL6-RB 1..967 42..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:50 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31594792..31595601 199..1008 99 <- Minus
3R 31596048..31596245 1..198 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:50 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31594792..31595601 199..1008 99 <- Minus
3R 31596048..31596245 1..198 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:50 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31594792..31595601 199..1008 99 <- Minus
3R 31596048..31596245 1..198 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:14 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27420514..27421323 199..1008 99 <- Minus
arm_3R 27421770..27421967 1..198 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:04:31 Download gff for RE08669.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31335623..31336432 199..1008 99 <- Minus
3R 31336879..31337076 1..198 100   Minus

RE08669.pep Sequence

Translation from 87 to 875

> RE08669.pep
MAPIEKAKKVAKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDK
KSPVVEKAKVPIKKVKKIGGPKNGGERTVFLKKSKASYPTKTFVKKRPSK
ANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFA
LNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGE
ADIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFA
LHSSQYPHRMRF*

RE08669.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23260-PA 243 GF23260-PA 1..243 1..262 1108 87.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11863-PA 243 GG11863-PA 1..243 1..262 1202 90.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18943-PA 241 GH18943-PA 1..241 1..262 1055 84 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-PB 262 CG11522-PB 1..262 1..262 1335 100 Plus
RpL6-PA 243 CG11522-PA 1..243 1..262 1206 92.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24201-PA 243 GI24201-PA 1..243 1..262 1121 83.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23887-PA 243 GL23887-PA 1..243 1..262 1073 84.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11048-PB 262 GA11048-PB 1..262 1..262 1190 91.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16427-PA 243 GM16427-PA 1..243 1..262 1213 91.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24129-PA 243 GJ24129-PA 1..243 1..262 1078 85.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11376-PA 241 GK11376-PA 1..241 1..262 1044 82.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23313-PA 243 GE23313-PA 1..243 1..262 1206 90.5 Plus

RE08669.hyp Sequence

Translation from 87 to 875

> RE08669.hyp
MAPIEKAKKVAKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDK
KSPVVEKAKVPIKKVKKIGGPKNGGERTVFLKKSKASYPTKTFVKKRPSK
ANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFA
LNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGE
ADIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFA
LHSSQYPHRMRF*

RE08669.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
RpL6-PB 262 CG11522-PB 1..262 1..262 1335 100 Plus
RpL6-PA 243 CG11522-PA 1..243 1..262 1206 92.7 Plus