BDGP Sequence Production Resources |
Search the DGRC for RE08669
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 86 |
Well: | 69 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpL6-RB |
Protein status: | RE08669.pep: gold |
Preliminary Size: | 1560 |
Sequenced Size: | 1024 |
Gene | Date | Evidence |
---|---|---|
CG11522 | 2001-12-14 | Blastp of sequenced clone |
CG11522 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11522 | 2003-01-01 | Sim4 clustering to Release 3 |
RpL6 | 2008-04-29 | Release 5.5 accounting |
RpL6 | 2008-08-15 | Release 5.9 accounting |
RpL6 | 2008-12-18 | 5.12 accounting |
1024 bp (1024 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070994
> RE08669.complete ATTTTTGTATCGACCGCCCTGGTCACACCGCTCTAGACATAACCTTCCTT TTCCAATAATTTTTGTGCTGTGTACACGTGTTTCACAATGGCACCCATCG AGAAAGCTAAAAAGGTGGCCAAGTCGGCCAAAAAGGGCAAGAAGCACCCC GTCAACTCCTACCTGAAGGGCGGTATCCTGCGTTACTCCAAGGCCCAGAT GTACAAGCGTCGTGCTCTGTACCGCCTGAAGGACAAGAAGAGCCCCGTCG TGGAGAAGGCCAAGGTGCCCATCAAGAAGGTGAAGAAGATCGGAGGACCC AAGAACGGCGGTGAGCGCACGGTCTTCCTGAAGAAGAGCAAGGCCTCCTA CCCGACCAAGACGTTCGTGAAGAAGCGCCCCTCCAAGGCAAACTTCAGCG AGCACAAACGCAACACGCGCCGCAACCTGACCCCCGGAACCGTGCTCATC CTGCTGGCCGGACGCCACCAGGGCAAGCGCGTCGTCCTGTTGAAGGTCTT GGCCTCCGGACTCCTGCTGGTCACCGGACCCTTCGCCCTCAACTCGTGCC CGCTGCGTCGCGTGTCCCAGCGCTACGTGATCGGCACCTCCTCGAAGGTG GATCTCGGTGCCTTCAAGGTGCCCGAGCACCTGAACGACGCCTACTTCCG CCGTCTGAAGGCTAAGAAGGACAAGAAGACCGGCGAGGCCGACATCTTCG CGGCCAAGAAGGAGCGCTTCGTGCCCAACGAGCAGCGCAAGAAGGACCAG AAGGAGGTGGACGCCGCCCTGCTGAAGGTCATCAAGGCCCATCCCGAGGG CAAGTTCTTCGCCAAGTACTTGCAGAACATGTTTGCCCTGCACTCCTCCC AATACCCCCACCGCATGCGATTCTAAGCGAGGGGATGGATTTGGTTCTTC AGTTTAAGGATTTCTAAAGCAAAAACACTGTACAAGCGCGCCCGCTGGTT AGACTAACAGGATTTGTAAAATAAACCTTACAAAACGGAAAGTTTTGGCC TTTTCACCAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 27417151..27417960 | 199..1008 | 99 | <- | Minus |
chr3R | 27418407..27418604 | 1..198 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL6-RB | 1..789 | 88..876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL6-RB | 1..789 | 88..876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL6-RB | 1..789 | 88..876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL6-RB | 1..789 | 88..876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL6-RB | 1..789 | 88..876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL6-RB | 1..1008 | 1..1008 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL6-RB | 1..1008 | 1..1008 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL6-RB | 1..967 | 42..1008 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL6-RB | 1..1008 | 1..1008 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL6-RB | 1..967 | 42..1008 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31594792..31595601 | 199..1008 | 99 | <- | Minus |
3R | 31596048..31596245 | 1..198 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31594792..31595601 | 199..1008 | 99 | <- | Minus |
3R | 31596048..31596245 | 1..198 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31594792..31595601 | 199..1008 | 99 | <- | Minus |
3R | 31596048..31596245 | 1..198 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 27420514..27421323 | 199..1008 | 99 | <- | Minus |
arm_3R | 27421770..27421967 | 1..198 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31335623..31336432 | 199..1008 | 99 | <- | Minus |
3R | 31336879..31337076 | 1..198 | 100 | Minus |
Translation from 87 to 875
> RE08669.pep MAPIEKAKKVAKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDK KSPVVEKAKVPIKKVKKIGGPKNGGERTVFLKKSKASYPTKTFVKKRPSK ANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFA LNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGE ADIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFA LHSSQYPHRMRF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23260-PA | 243 | GF23260-PA | 1..243 | 1..262 | 1108 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11863-PA | 243 | GG11863-PA | 1..243 | 1..262 | 1202 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18943-PA | 241 | GH18943-PA | 1..241 | 1..262 | 1055 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL6-PB | 262 | CG11522-PB | 1..262 | 1..262 | 1335 | 100 | Plus |
RpL6-PA | 243 | CG11522-PA | 1..243 | 1..262 | 1206 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24201-PA | 243 | GI24201-PA | 1..243 | 1..262 | 1121 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23887-PA | 243 | GL23887-PA | 1..243 | 1..262 | 1073 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11048-PB | 262 | GA11048-PB | 1..262 | 1..262 | 1190 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16427-PA | 243 | GM16427-PA | 1..243 | 1..262 | 1213 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24129-PA | 243 | GJ24129-PA | 1..243 | 1..262 | 1078 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11376-PA | 241 | GK11376-PA | 1..241 | 1..262 | 1044 | 82.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23313-PA | 243 | GE23313-PA | 1..243 | 1..262 | 1206 | 90.5 | Plus |
Translation from 87 to 875
> RE08669.hyp MAPIEKAKKVAKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDK KSPVVEKAKVPIKKVKKIGGPKNGGERTVFLKKSKASYPTKTFVKKRPSK ANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFA LNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGE ADIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFA LHSSQYPHRMRF*