BDGP Sequence Production Resources |
Search the DGRC for RE08679
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 86 |
Well: | 79 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Slh-RC |
Protein status: | RE08679.pep: gold |
Preliminary Size: | 2085 |
Sequenced Size: | 2207 |
Gene | Date | Evidence |
---|---|---|
CG3539 | 2001-12-14 | Blastp of sequenced clone |
CG3539 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3539 | 2003-01-01 | Sim4 clustering to Release 3 |
Slh | 2008-04-29 | Release 5.5 accounting |
Slh | 2008-08-15 | Release 5.9 accounting |
Slh | 2008-12-18 | 5.12 accounting |
2207 bp (2207 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070995
> RE08679.complete AAAATTTCCCAAAACGCGTTGCCTCGCCGTCGCTTGTGACGTGTTGTTTT TTTGTAAAATATGTTTTTCAGCTGCTAAAACGGACATAGATTGTTGAAAA TCCACTGAAACTAACTCAGAAGGACGGGCTAAAGACGGACTATATAATGC TGACCCTGCGGGAGCGCCAAATCAATGCCATTAAGCAGATGCTTAATTTG AACTCGCAGCAGCCGAAAGCCCTAGCTGCCGAGCCCGTGTGGAAGATCCT TATCTACGATCGCGTTGGCCAGGACATCATATCGCCCATTATTTCCATCA AGGAGCTGCGCGAGTTGGGCGTGACGCTGCATGTGCAACTGCACTCGGAT CGCGACTCCATTCCGGATGTGCCGGCTATATACTTCTGCCTGCCCACCGA CGAGAATTTGGACAGGATTCAGCAGGACTTCTCGAGCGGACTGTACGACG TGTACCACCTGAACTTCCTAGCTCCCATAACGCGCAGCAAAATCGAGAAT CTGGCCGCCGCAGCCCTGCATGCCGGCTGCGTGGCCAACATCCATCGCGT TTACGACCAGTATGTGAACTTCATCAGTCTAGAGGATGACTTCTTCATCC TAAAGCACCAGCAGAGCGATCAGCTTTCATACTACGCCATCAACCGGGCC AACACCCGCGATGAAGAGATGGAGGCCCTGATGGACTCCATTGTAGACTC GCTCTTCGCCCTGTTTGTGACCCTGGGCAATGTGCCCATCATCCGCTGTC CGCGGAACAGTGCCGCTGAAATGGTGGCACGCAAGCTGGAGAAGAAGCTG CGCGAGAACCTTTGGGATGCGCGTGCCAATTTGTTCCACATGGATGCCAC GCAAGCCGGCGGCGGAGTGTTCAGCTTTCAGAGACCTGTGCTCCTGCTGC TGGACAGGAACATGGATTTAGCCACGCCGCTCCATCACACCTGGTCGTAT CAGGCGCTTGTGCACGATGTACTGGACTTGGGACTGAATCTTGTCTACGT GGAGGACGAGACGGCTAGTGCGGGAGCCCGCAAAAAACCCAAGGCCTGTG ACTTGGACCGCAACGACCGCTTCTGGATGACGCACAAGGGCAGTCCATTT CCCACGGTGGCCGAAGCCATCCAGGAGGAGCTGGAATCCTATCGGAACTC CGAGGAGGAGATCAAGCGCTTGAAGACATCGATGGGTATCGAGGGCGAGT CGGACATTGCATTCTCTTTGGTCAATGACACAACGGCCAGGCTCACCAAT GCCGTCAATTCGCTGCCCCAACTGATGGAGAAGAAGCGACTGATCGACAT GCACACCAAGATCGCCACTGCAATCCTGAACTTCATTAAGGCTCGACGAC TGGATTCGTTTTTTGAGATCGAGGAGAAGGTCATGTCGAAGCAGACACTG GACAGACCGCTGCTGGACCTACTGCGAGATGGAGAGTTTGGTCAGGCGGA GGACAAGCTGCGCCTGTATATCATCTACTTTATCTGCGCCCAGCAGTTAC CCGAATCGGAGCAGGAGCGGCTCAAGGAGGCGCTGCAGGCTGCCGGTTGT GACCTAACTGCCCTTGCGTACGTGCAACGATGGAAGGGAATCATGAACCG CTCGCCGAGCATTAGCCAAGCCACACAGTACGAGGGTGGCGGCACCAAGA CTGTGTCCATGTTCACTAAACTCGTCTCACAGGGCAGCTCCTTCGTGATG GAGGGCGTCAAGAATCTGGTGGTCAAGCGACATAATCTTCCGGTGACCAA GATCACCGAGCAGGTGATGGAGTGCCGCAGCAATGCGGAGACGGATGACT ACCTTTATCTGGATCCAAAGCTGCTCAAAGGTGGCGAGGTCCTGCCCAAA AATCGTGCTCCATTCCAGGACGCCGTGGTGTTCATGGTCGGCGGAGGCAA CTACATCGAGTACCAGAACCTGGTGGACTTCATCAAACAGAAGCAAACGT CCAATGTGCAACGGCGCATCATTTATGGCGCTTCCACGCTGACCAACGCG AGGCAGTTCCTCAAGGAGCTCTCCGCCCTGGGCGGCGAGATCCAGTCGCC GACGGCGACGAGTTAGGAGCGGCTGCTCCGATTCCATTGCTGCTGAGCGG AGTGGACCGGGTTTTGGTTGCATGTGCATGGGTGTCTGTGTGGCTTCTTT CGTTTACTTTAAGCATATCCAAAAATAAATTAAATGCCAGGCAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Slh-RC | 2445 | Slh-RC | 88..2285 | 1..2198 | 10975 | 99.9 | Plus |
Slh-RF | 2201 | Slh-RF | 1..2192 | 1..2198 | 10860 | 99.6 | Plus |
Slh-RD | 2271 | Slh-RD | 11..1743 | 1..1733 | 8650 | 99.9 | Plus |
Slh-RD | 2271 | Slh-RD | 1798..2262 | 1734..2198 | 2325 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 2490487..2491197 | 1733..1023 | 3555 | 100 | Minus |
chr2L | 23010047 | chr2L | 2491266..2491955 | 1024..335 | 3435 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 2489974..2490432 | 2192..1734 | 2295 | 100 | Minus |
chr2L | 23010047 | chr2L | 2492247..2492420 | 174..1 | 870 | 100 | Minus |
chr2L | 23010047 | chr2L | 2492012..2492172 | 335..175 | 805 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 2490733..2491443 | 1733..1023 | 3555 | 100 | Minus |
2L | 23513712 | 2L | 2491512..2492201 | 1024..335 | 3435 | 99.9 | Minus |
2L | 23513712 | 2L | 2490214..2490678 | 2198..1734 | 2325 | 100 | Minus |
2L | 23513712 | 2L | 2492493..2492666 | 174..1 | 870 | 100 | Minus |
2L | 23513712 | 2L | 2492258..2492418 | 335..175 | 805 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 2490733..2491443 | 1733..1023 | 3555 | 100 | Minus |
2L | 23513712 | 2L | 2491512..2492201 | 1024..335 | 3435 | 99.8 | Minus |
2L | 23513712 | 2L | 2490214..2490678 | 2198..1734 | 2325 | 100 | Minus |
2L | 23513712 | 2L | 2492493..2492666 | 174..1 | 870 | 100 | Minus |
2L | 23513712 | 2L | 2492258..2492418 | 335..175 | 805 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 2489974..2490432 | 1734..2192 | 100 | <- | Minus |
chr2L | 2490487..2491193 | 1027..1733 | 100 | <- | Minus |
chr2L | 2491263..2491955 | 335..1026 | 99 | <- | Minus |
chr2L | 2492013..2492172 | 175..334 | 100 | <- | Minus |
chr2L | 2492247..2492420 | 1..174 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slh-RC | 1..1920 | 147..2066 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slh-RC | 1..1920 | 147..2066 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slh-RC | 1..1920 | 147..2066 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slh-RC | 1..1920 | 147..2066 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slh-RC | 1..1920 | 147..2066 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slh-RC | 1..2192 | 1..2192 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slh-RC | 1..2192 | 1..2192 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slh-RC | 6..2197 | 1..2192 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slh-RC | 1..2192 | 1..2192 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Slh-RC | 6..2197 | 1..2192 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2492259..2492418 | 175..334 | 100 | <- | Minus |
2L | 2492493..2492666 | 1..174 | 100 | Minus | |
2L | 2490220..2490678 | 1734..2192 | 100 | <- | Minus |
2L | 2490733..2491439 | 1027..1733 | 100 | <- | Minus |
2L | 2491509..2492201 | 335..1026 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2492259..2492418 | 175..334 | 100 | <- | Minus |
2L | 2492493..2492666 | 1..174 | 100 | Minus | |
2L | 2490220..2490678 | 1734..2192 | 100 | <- | Minus |
2L | 2490733..2491439 | 1027..1733 | 100 | <- | Minus |
2L | 2491509..2492201 | 335..1026 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2492259..2492418 | 175..334 | 100 | <- | Minus |
2L | 2492493..2492666 | 1..174 | 100 | Minus | |
2L | 2490220..2490678 | 1734..2192 | 100 | <- | Minus |
2L | 2490733..2491439 | 1027..1733 | 100 | <- | Minus |
2L | 2491509..2492201 | 335..1026 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 2490220..2490678 | 1734..2192 | 100 | <- | Minus |
arm_2L | 2490733..2491439 | 1027..1733 | 100 | <- | Minus |
arm_2L | 2491509..2492201 | 335..1026 | 99 | <- | Minus |
arm_2L | 2492259..2492418 | 175..334 | 100 | <- | Minus |
arm_2L | 2492493..2492666 | 1..174 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2492493..2492666 | 1..174 | 100 | Minus | |
2L | 2490220..2490678 | 1734..2192 | 100 | <- | Minus |
2L | 2490733..2491439 | 1027..1733 | 100 | <- | Minus |
2L | 2491509..2492201 | 335..1026 | 99 | <- | Minus |
2L | 2492259..2492418 | 175..334 | 100 | <- | Minus |
Translation from 146 to 2065
> RE08679.pep MLTLRERQINAIKQMLNLNSQQPKALAAEPVWKILIYDRVGQDIISPIIS IKELRELGVTLHVQLHSDRDSIPDVPAIYFCLPTDENLDRIQQDFSSGLY DVYHLNFLAPITRSKIENLAAAALHAGCVANIHRVYDQYVNFISLEDDFF ILKHQQSDQLSYYAINRANTRDEEMEALMDSIVDSLFALFVTLGNVPIIR CPRNSAAEMVARKLEKKLRENLWDARANLFHMDATQAGGGVFSFQRPVLL LLDRNMDLATPLHHTWSYQALVHDVLDLGLNLVYVEDETASAGARKKPKA CDLDRNDRFWMTHKGSPFPTVAEAIQEELESYRNSEEEIKRLKTSMGIEG ESDIAFSLVNDTTARLTNAVNSLPQLMEKKRLIDMHTKIATAILNFIKAR RLDSFFEIEEKVMSKQTLDRPLLDLLRDGEFGQAEDKLRLYIIYFICAQQ LPESEQERLKEALQAAGCDLTALAYVQRWKGIMNRSPSISQATQYEGGGT KTVSMFTKLVSQGSSFVMEGVKNLVVKRHNLPVTKITEQVMECRSNAETD DYLYLDPKLLKGGEVLPKNRAPFQDAVVFMVGGGNYIEYQNLVDFIKQKQ TSNVQRRIIYGASTLTNARQFLKELSALGGEIQSPTATS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20604-PA | 639 | GF20604-PA | 1..639 | 1..639 | 3363 | 97.2 | Plus |
Dana\GF18478-PA | 574 | GF18478-PA | 20..558 | 30..633 | 282 | 23.4 | Plus |
Dana\GF20177-PA | 599 | GF20177-PA | 28..335 | 19..346 | 205 | 23.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24515-PA | 639 | GG24515-PA | 1..639 | 1..639 | 3427 | 99.5 | Plus |
Dere\GG16896-PA | 574 | GG16896-PA | 20..552 | 30..627 | 262 | 22.3 | Plus |
Dere\GG14217-PA | 597 | GG14217-PA | 39..333 | 32..346 | 213 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11497-PA | 638 | GH11497-PA | 1..638 | 1..638 | 3248 | 93.4 | Plus |
Dgri\GH17352-PA | 600 | GH17352-PA | 42..336 | 32..346 | 222 | 26.2 | Plus |
Dgri\GH19300-PA | 574 | GH19300-PA | 20..556 | 30..630 | 209 | 22.6 | Plus |
Dgri\GH12659-PA | 601 | GH12659-PA | 42..326 | 32..336 | 203 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Slh-PG | 639 | CG3539-PG | 1..639 | 1..639 | 3259 | 100 | Plus |
Slh-PC | 639 | CG3539-PC | 1..639 | 1..639 | 3259 | 100 | Plus |
Vps45-PA | 574 | CG8228-PA | 20..558 | 30..633 | 280 | 22 | Plus |
Rop-PB | 597 | CG15811-PB | 39..435 | 32..459 | 219 | 21.9 | Plus |
Rop-PA | 597 | CG15811-PA | 39..435 | 32..459 | 219 | 21.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16994-PA | 639 | GI16994-PA | 1..639 | 1..638 | 3293 | 95.3 | Plus |
Dmoj\GI23516-PA | 574 | GI23516-PA | 20..556 | 30..630 | 216 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26465-PA | 638 | GL26465-PA | 1..638 | 1..639 | 3313 | 95.9 | Plus |
Dper\GL21496-PA | 490 | GL21496-PA | 7..472 | 99..630 | 225 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28872-PA | 638 | GA28872-PA | 1..638 | 1..639 | 3313 | 95.9 | Plus |
Dpse\GA26299-PA | 574 | GA26299-PA | 20..556 | 30..630 | 278 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18223-PA | 639 | GM18223-PA | 1..639 | 1..639 | 3423 | 99.5 | Plus |
Dsec\GM23816-PA | 549 | GM23816-PA | 20..533 | 30..633 | 239 | 22.6 | Plus |
Dsec\GM14010-PA | 597 | GM14010-PA | 39..333 | 32..346 | 213 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22831-PA | 625 | GD22831-PA | 1..625 | 1..639 | 3336 | 97.7 | Plus |
Dsim\GD18625-PA | 564 | GD18625-PA | 20..558 | 30..633 | 269 | 22.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Slh-PA | 638 | GJ24182-PA | 1..638 | 1..638 | 3304 | 95.3 | Plus |
Dvir\GJ15999-PA | 589 | GJ15999-PA | 31..325 | 32..346 | 213 | 24.7 | Plus |
Dvir\GJ10268-PA | 574 | GJ10268-PA | 20..556 | 30..630 | 209 | 21.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23735-PA | 640 | GK23735-PA | 1..640 | 1..639 | 3300 | 94.5 | Plus |
Dwil\GK11253-PA | 574 | GK11253-PA | 20..556 | 30..630 | 245 | 23.7 | Plus |
Dwil\GK25120-PA | 599 | GK25120-PA | 41..335 | 32..346 | 202 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15096-PA | 639 | GE15096-PA | 1..639 | 1..639 | 3431 | 99.7 | Plus |
Dyak\GE25962-PA | 574 | GE25962-PA | 20..558 | 30..633 | 267 | 22.7 | Plus |
Dyak\GE20645-PA | 597 | GE20645-PA | 39..333 | 32..346 | 213 | 24.8 | Plus |
Translation from 1076 to 2065
> RE08679.hyp MTHKGSPFPTVAEAIQEELESYRNSEEEIKRLKTSMGIEGESDIAFSLVN DTTARLTNAVNSLPQLMEKKRLIDMHTKIATAILNFIKARRLDSFFEIEE KVMSKQTLDRPLLDLLRDGEFGQAEDKLRLYIIYFICAQQLPESEQERLK EALQAAGCDLTALAYVQRWKGIMNRSPSISQATQYEGGGTKTVSMFTKLV SQGSSFVMEGVKNLVVKRHNLPVTKITEQVMECRSNAETDDYLYLDPKLL KGGEVLPKNRAPFQDAVVFMVGGGNYIEYQNLVDFIKQKQTSNVQRRIIY GASTLTNARQFLKELSALGGEIQSPTATS*