Clone RE08679 Report

Search the DGRC for RE08679

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:86
Well:79
Vector:pFlc-1
Associated Gene/TranscriptSlh-RC
Protein status:RE08679.pep: gold
Preliminary Size:2085
Sequenced Size:2207

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3539 2001-12-14 Blastp of sequenced clone
CG3539 2002-01-01 Sim4 clustering to Release 2
CG3539 2003-01-01 Sim4 clustering to Release 3
Slh 2008-04-29 Release 5.5 accounting
Slh 2008-08-15 Release 5.9 accounting
Slh 2008-12-18 5.12 accounting

Clone Sequence Records

RE08679.complete Sequence

2207 bp (2207 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070995

> RE08679.complete
AAAATTTCCCAAAACGCGTTGCCTCGCCGTCGCTTGTGACGTGTTGTTTT
TTTGTAAAATATGTTTTTCAGCTGCTAAAACGGACATAGATTGTTGAAAA
TCCACTGAAACTAACTCAGAAGGACGGGCTAAAGACGGACTATATAATGC
TGACCCTGCGGGAGCGCCAAATCAATGCCATTAAGCAGATGCTTAATTTG
AACTCGCAGCAGCCGAAAGCCCTAGCTGCCGAGCCCGTGTGGAAGATCCT
TATCTACGATCGCGTTGGCCAGGACATCATATCGCCCATTATTTCCATCA
AGGAGCTGCGCGAGTTGGGCGTGACGCTGCATGTGCAACTGCACTCGGAT
CGCGACTCCATTCCGGATGTGCCGGCTATATACTTCTGCCTGCCCACCGA
CGAGAATTTGGACAGGATTCAGCAGGACTTCTCGAGCGGACTGTACGACG
TGTACCACCTGAACTTCCTAGCTCCCATAACGCGCAGCAAAATCGAGAAT
CTGGCCGCCGCAGCCCTGCATGCCGGCTGCGTGGCCAACATCCATCGCGT
TTACGACCAGTATGTGAACTTCATCAGTCTAGAGGATGACTTCTTCATCC
TAAAGCACCAGCAGAGCGATCAGCTTTCATACTACGCCATCAACCGGGCC
AACACCCGCGATGAAGAGATGGAGGCCCTGATGGACTCCATTGTAGACTC
GCTCTTCGCCCTGTTTGTGACCCTGGGCAATGTGCCCATCATCCGCTGTC
CGCGGAACAGTGCCGCTGAAATGGTGGCACGCAAGCTGGAGAAGAAGCTG
CGCGAGAACCTTTGGGATGCGCGTGCCAATTTGTTCCACATGGATGCCAC
GCAAGCCGGCGGCGGAGTGTTCAGCTTTCAGAGACCTGTGCTCCTGCTGC
TGGACAGGAACATGGATTTAGCCACGCCGCTCCATCACACCTGGTCGTAT
CAGGCGCTTGTGCACGATGTACTGGACTTGGGACTGAATCTTGTCTACGT
GGAGGACGAGACGGCTAGTGCGGGAGCCCGCAAAAAACCCAAGGCCTGTG
ACTTGGACCGCAACGACCGCTTCTGGATGACGCACAAGGGCAGTCCATTT
CCCACGGTGGCCGAAGCCATCCAGGAGGAGCTGGAATCCTATCGGAACTC
CGAGGAGGAGATCAAGCGCTTGAAGACATCGATGGGTATCGAGGGCGAGT
CGGACATTGCATTCTCTTTGGTCAATGACACAACGGCCAGGCTCACCAAT
GCCGTCAATTCGCTGCCCCAACTGATGGAGAAGAAGCGACTGATCGACAT
GCACACCAAGATCGCCACTGCAATCCTGAACTTCATTAAGGCTCGACGAC
TGGATTCGTTTTTTGAGATCGAGGAGAAGGTCATGTCGAAGCAGACACTG
GACAGACCGCTGCTGGACCTACTGCGAGATGGAGAGTTTGGTCAGGCGGA
GGACAAGCTGCGCCTGTATATCATCTACTTTATCTGCGCCCAGCAGTTAC
CCGAATCGGAGCAGGAGCGGCTCAAGGAGGCGCTGCAGGCTGCCGGTTGT
GACCTAACTGCCCTTGCGTACGTGCAACGATGGAAGGGAATCATGAACCG
CTCGCCGAGCATTAGCCAAGCCACACAGTACGAGGGTGGCGGCACCAAGA
CTGTGTCCATGTTCACTAAACTCGTCTCACAGGGCAGCTCCTTCGTGATG
GAGGGCGTCAAGAATCTGGTGGTCAAGCGACATAATCTTCCGGTGACCAA
GATCACCGAGCAGGTGATGGAGTGCCGCAGCAATGCGGAGACGGATGACT
ACCTTTATCTGGATCCAAAGCTGCTCAAAGGTGGCGAGGTCCTGCCCAAA
AATCGTGCTCCATTCCAGGACGCCGTGGTGTTCATGGTCGGCGGAGGCAA
CTACATCGAGTACCAGAACCTGGTGGACTTCATCAAACAGAAGCAAACGT
CCAATGTGCAACGGCGCATCATTTATGGCGCTTCCACGCTGACCAACGCG
AGGCAGTTCCTCAAGGAGCTCTCCGCCCTGGGCGGCGAGATCCAGTCGCC
GACGGCGACGAGTTAGGAGCGGCTGCTCCGATTCCATTGCTGCTGAGCGG
AGTGGACCGGGTTTTGGTTGCATGTGCATGGGTGTCTGTGTGGCTTCTTT
CGTTTACTTTAAGCATATCCAAAAATAAATTAAATGCCAGGCAAAAAAAA
AAAAAAA

RE08679.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Slh-RC 2445 Slh-RC 88..2285 1..2198 10975 99.9 Plus
Slh-RF 2201 Slh-RF 1..2192 1..2198 10860 99.6 Plus
Slh-RD 2271 Slh-RD 11..1743 1..1733 8650 99.9 Plus
Slh-RD 2271 Slh-RD 1798..2262 1734..2198 2325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2490487..2491197 1733..1023 3555 100 Minus
chr2L 23010047 chr2L 2491266..2491955 1024..335 3435 99.9 Minus
chr2L 23010047 chr2L 2489974..2490432 2192..1734 2295 100 Minus
chr2L 23010047 chr2L 2492247..2492420 174..1 870 100 Minus
chr2L 23010047 chr2L 2492012..2492172 335..175 805 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:31:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2490733..2491443 1733..1023 3555 100 Minus
2L 23513712 2L 2491512..2492201 1024..335 3435 99.9 Minus
2L 23513712 2L 2490214..2490678 2198..1734 2325 100 Minus
2L 23513712 2L 2492493..2492666 174..1 870 100 Minus
2L 23513712 2L 2492258..2492418 335..175 805 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2490733..2491443 1733..1023 3555 100 Minus
2L 23513712 2L 2491512..2492201 1024..335 3435 99.8 Minus
2L 23513712 2L 2490214..2490678 2198..1734 2325 100 Minus
2L 23513712 2L 2492493..2492666 174..1 870 100 Minus
2L 23513712 2L 2492258..2492418 335..175 805 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:00:36 has no hits.

RE08679.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:01:41 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2489974..2490432 1734..2192 100 <- Minus
chr2L 2490487..2491193 1027..1733 100 <- Minus
chr2L 2491263..2491955 335..1026 99 <- Minus
chr2L 2492013..2492172 175..334 100 <- Minus
chr2L 2492247..2492420 1..174 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:51:29 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
Slh-RC 1..1920 147..2066 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:03:49 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
Slh-RC 1..1920 147..2066 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:12:07 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
Slh-RC 1..1920 147..2066 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:28:27 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
Slh-RC 1..1920 147..2066 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:22:39 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
Slh-RC 1..1920 147..2066 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:31:06 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
Slh-RC 1..2192 1..2192 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:03:49 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
Slh-RC 1..2192 1..2192 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:12:07 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
Slh-RC 6..2197 1..2192 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:28:27 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
Slh-RC 1..2192 1..2192 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:22:39 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
Slh-RC 6..2197 1..2192 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:01:41 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2492259..2492418 175..334 100 <- Minus
2L 2492493..2492666 1..174 100   Minus
2L 2490220..2490678 1734..2192 100 <- Minus
2L 2490733..2491439 1027..1733 100 <- Minus
2L 2491509..2492201 335..1026 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:01:41 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2492259..2492418 175..334 100 <- Minus
2L 2492493..2492666 1..174 100   Minus
2L 2490220..2490678 1734..2192 100 <- Minus
2L 2490733..2491439 1027..1733 100 <- Minus
2L 2491509..2492201 335..1026 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:01:41 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2492259..2492418 175..334 100 <- Minus
2L 2492493..2492666 1..174 100   Minus
2L 2490220..2490678 1734..2192 100 <- Minus
2L 2490733..2491439 1027..1733 100 <- Minus
2L 2491509..2492201 335..1026 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:12:07 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2490220..2490678 1734..2192 100 <- Minus
arm_2L 2490733..2491439 1027..1733 100 <- Minus
arm_2L 2491509..2492201 335..1026 99 <- Minus
arm_2L 2492259..2492418 175..334 100 <- Minus
arm_2L 2492493..2492666 1..174 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:04:22 Download gff for RE08679.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2492493..2492666 1..174 100   Minus
2L 2490220..2490678 1734..2192 100 <- Minus
2L 2490733..2491439 1027..1733 100 <- Minus
2L 2491509..2492201 335..1026 99 <- Minus
2L 2492259..2492418 175..334 100 <- Minus

RE08679.pep Sequence

Translation from 146 to 2065

> RE08679.pep
MLTLRERQINAIKQMLNLNSQQPKALAAEPVWKILIYDRVGQDIISPIIS
IKELRELGVTLHVQLHSDRDSIPDVPAIYFCLPTDENLDRIQQDFSSGLY
DVYHLNFLAPITRSKIENLAAAALHAGCVANIHRVYDQYVNFISLEDDFF
ILKHQQSDQLSYYAINRANTRDEEMEALMDSIVDSLFALFVTLGNVPIIR
CPRNSAAEMVARKLEKKLRENLWDARANLFHMDATQAGGGVFSFQRPVLL
LLDRNMDLATPLHHTWSYQALVHDVLDLGLNLVYVEDETASAGARKKPKA
CDLDRNDRFWMTHKGSPFPTVAEAIQEELESYRNSEEEIKRLKTSMGIEG
ESDIAFSLVNDTTARLTNAVNSLPQLMEKKRLIDMHTKIATAILNFIKAR
RLDSFFEIEEKVMSKQTLDRPLLDLLRDGEFGQAEDKLRLYIIYFICAQQ
LPESEQERLKEALQAAGCDLTALAYVQRWKGIMNRSPSISQATQYEGGGT
KTVSMFTKLVSQGSSFVMEGVKNLVVKRHNLPVTKITEQVMECRSNAETD
DYLYLDPKLLKGGEVLPKNRAPFQDAVVFMVGGGNYIEYQNLVDFIKQKQ
TSNVQRRIIYGASTLTNARQFLKELSALGGEIQSPTATS*

RE08679.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20604-PA 639 GF20604-PA 1..639 1..639 3363 97.2 Plus
Dana\GF18478-PA 574 GF18478-PA 20..558 30..633 282 23.4 Plus
Dana\GF20177-PA 599 GF20177-PA 28..335 19..346 205 23.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24515-PA 639 GG24515-PA 1..639 1..639 3427 99.5 Plus
Dere\GG16896-PA 574 GG16896-PA 20..552 30..627 262 22.3 Plus
Dere\GG14217-PA 597 GG14217-PA 39..333 32..346 213 24.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11497-PA 638 GH11497-PA 1..638 1..638 3248 93.4 Plus
Dgri\GH17352-PA 600 GH17352-PA 42..336 32..346 222 26.2 Plus
Dgri\GH19300-PA 574 GH19300-PA 20..556 30..630 209 22.6 Plus
Dgri\GH12659-PA 601 GH12659-PA 42..326 32..336 203 24.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
Slh-PG 639 CG3539-PG 1..639 1..639 3259 100 Plus
Slh-PC 639 CG3539-PC 1..639 1..639 3259 100 Plus
Vps45-PA 574 CG8228-PA 20..558 30..633 280 22 Plus
Rop-PB 597 CG15811-PB 39..435 32..459 219 21.9 Plus
Rop-PA 597 CG15811-PA 39..435 32..459 219 21.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16994-PA 639 GI16994-PA 1..639 1..638 3293 95.3 Plus
Dmoj\GI23516-PA 574 GI23516-PA 20..556 30..630 216 23.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26465-PA 638 GL26465-PA 1..638 1..639 3313 95.9 Plus
Dper\GL21496-PA 490 GL21496-PA 7..472 99..630 225 23.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28872-PA 638 GA28872-PA 1..638 1..639 3313 95.9 Plus
Dpse\GA26299-PA 574 GA26299-PA 20..556 30..630 278 23.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18223-PA 639 GM18223-PA 1..639 1..639 3423 99.5 Plus
Dsec\GM23816-PA 549 GM23816-PA 20..533 30..633 239 22.6 Plus
Dsec\GM14010-PA 597 GM14010-PA 39..333 32..346 213 24.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22831-PA 625 GD22831-PA 1..625 1..639 3336 97.7 Plus
Dsim\GD18625-PA 564 GD18625-PA 20..558 30..633 269 22.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Slh-PA 638 GJ24182-PA 1..638 1..638 3304 95.3 Plus
Dvir\GJ15999-PA 589 GJ15999-PA 31..325 32..346 213 24.7 Plus
Dvir\GJ10268-PA 574 GJ10268-PA 20..556 30..630 209 21.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23735-PA 640 GK23735-PA 1..640 1..639 3300 94.5 Plus
Dwil\GK11253-PA 574 GK11253-PA 20..556 30..630 245 23.7 Plus
Dwil\GK25120-PA 599 GK25120-PA 41..335 32..346 202 24.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15096-PA 639 GE15096-PA 1..639 1..639 3431 99.7 Plus
Dyak\GE25962-PA 574 GE25962-PA 20..558 30..633 267 22.7 Plus
Dyak\GE20645-PA 597 GE20645-PA 39..333 32..346 213 24.8 Plus

RE08679.hyp Sequence

Translation from 1076 to 2065

> RE08679.hyp
MTHKGSPFPTVAEAIQEELESYRNSEEEIKRLKTSMGIEGESDIAFSLVN
DTTARLTNAVNSLPQLMEKKRLIDMHTKIATAILNFIKARRLDSFFEIEE
KVMSKQTLDRPLLDLLRDGEFGQAEDKLRLYIIYFICAQQLPESEQERLK
EALQAAGCDLTALAYVQRWKGIMNRSPSISQATQYEGGGTKTVSMFTKLV
SQGSSFVMEGVKNLVVKRHNLPVTKITEQVMECRSNAETDDYLYLDPKLL
KGGEVLPKNRAPFQDAVVFMVGGGNYIEYQNLVDFIKQKQTSNVQRRIIY
GASTLTNARQFLKELSALGGEIQSPTATS*

RE08679.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Slh-PG 639 CG3539-PG 311..639 1..329 1656 100 Plus
Slh-PC 639 CG3539-PC 311..639 1..329 1656 100 Plus