Clone RE08710 Report

Search the DGRC for RE08710

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:87
Well:10
Vector:pFlc-1
Associated Gene/TranscriptCG16749-RA
Protein status:RE08710.pep: gold
Preliminary Size:924
Sequenced Size:900

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16749 2002-01-01 Sim4 clustering to Release 2
CG16749 2002-04-04 Blastp of sequenced clone
CG16749 2003-01-01 Sim4 clustering to Release 3
CG16749 2008-04-29 Release 5.5 accounting
CG16749 2008-08-15 Release 5.9 accounting
CG16749 2008-12-18 5.12 accounting

Clone Sequence Records

RE08710.complete Sequence

900 bp (900 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095066

> RE08710.complete
ATTTTTAGCTGAAAAAATGTCGCGGAATCAGGATCTCTGCCTGGCGGTAT
TCGCCCTCTTGACCACCGCGGGCATTTCCCATGGAGCTCCCCAAATGGGT
CGTGTGGTCAATGGCACGGATTCCAGCGTGGAGAAATACCCCTTCGTGAT
TTCGATGCGTGGATCCAGTGGCTCGCATTCCTGCGGTGGCTCCATTATTT
CCAAGCAGTTTGTAATGACTGCTGCTCATTGTACGGATGGACGCAAGGCA
TCGGATTTGTCTGTTCAGTATGGAGTGACTAAGATTAATGCCACCGGTCC
GAATGTGGTGCGCGTGAAGAAGATCATCCAGCACGAGGATTATAATCCCT
ACAACAACTATGCCAACGATATTTCACTGCTGCTCGTGGAGGAGCCATTC
GAGTTTGATGGCGTCACGGTTGCACCCGTAAAGTTGCCGGAGCTCGCCTT
TGCCACACCTCAAACGGATGCCGGTGGCGAGGGGGTGCTCATCGGATGGG
GACTCAATGCGACTGGCGGATACATCCAATCCACACTGCAGGAGGTGGAA
TTGAAGGTCTACTCAGACGAGGAGTGCACCGAACGCCATGGCGGTCGCAC
CGATCCCAGGTACCACATCTGCGGAGGGGTGGACGAGGGTGGCAAGGGAC
AGTGCAGCGGAGATTCGGGTGGACCCCTCATCTACAATGGCCAGCAGGTG
GGCATCGTGTCGTGGAGCATCAAGCCCTGCACCGTGGCACCCTATCCGGG
TGTTTACTGCAAGGTCAGCCAGTATGTTGACTGGATCAAGAAGAGCCAGA
TCATCTTGGCCTAGTCATCGCATTATCTGAGTGAATAGTGTATGGGCTAT
GCGTGCAATAAATAAAATTGATATTGAATGATTAGAAAAAAAAAAAAAAA

RE08710.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG16749-RA 1066 CG16749-RA 101..984 1..884 4405 99.8 Plus
CG12951-RA 890 CG12951-RA 613..828 602..817 690 87.9 Plus
CG12951-RA 890 CG12951-RA 275..360 264..349 220 83.7 Plus
CG12951-RA 890 CG12951-RA 180..242 169..231 210 88.8 Plus
CG12951-RA 890 CG12951-RA 469..520 458..509 140 84.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5156649..5157022 884..511 1870 100 Minus
chr3R 27901430 chr3R 5157085..5157448 511..148 1790 99.5 Minus
chr3R 27901430 chr3R 5157513..5157660 148..1 740 100 Minus
chr3R 27901430 chr3R 5155038..5155253 817..602 690 88 Minus
chr3R 27901430 chr3R 5155408..5155748 509..169 460 75.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:31:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9330884..9331257 884..511 1870 100 Minus
3R 32079331 3R 9331320..9331683 511..148 1805 99.7 Minus
3R 32079331 3R 9331748..9331895 148..1 740 100 Minus
3R 32079331 3R 9329273..9329488 817..602 690 88 Minus
3R 32079331 3R 9329643..9329983 509..169 430 75.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9071715..9072088 884..511 1870 100 Minus
3R 31820162 3R 9072151..9072514 511..148 1805 99.7 Minus
3R 31820162 3R 9072579..9072726 148..1 740 100 Minus
3R 31820162 3R 9070104..9070319 817..602 690 87.9 Minus
3R 31820162 3R 9070634..9070719 349..264 220 83.7 Minus
3R 31820162 3R 9070752..9070814 231..169 210 88.8 Minus
3R 31820162 3R 9070474..9070525 509..458 140 84.6 Minus
Blast to na_te.dros performed on 2019-03-16 16:29:35 has no hits.

RE08710.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:30:36 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5156648..5157021 512..885 99 <- Minus
chr3R 5157085..5157447 149..511 99 <- Minus
chr3R 5157513..5157660 1..148 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:51:32 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
CG16749-RA 1..798 17..814 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:15:16 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
CG16749-RA 1..798 17..814 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:14:15 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
CG16749-RA 1..798 17..814 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:15 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
CG16749-RA 1..798 17..814 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:30:29 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
CG16749-RA 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:46:23 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
CG16749-RA 1..884 1..885 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:15:16 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
CG16749-RA 1..883 1..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:14:15 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
CG16749-RA 1..873 11..883 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:16 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
CG16749-RA 1..884 1..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:30:29 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
CG16749-RA 1..873 11..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:36 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9331748..9331895 1..148 100   Minus
3R 9331320..9331682 149..511 99 <- Minus
3R 9330883..9331256 512..885 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:36 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9331748..9331895 1..148 100   Minus
3R 9331320..9331682 149..511 99 <- Minus
3R 9330883..9331256 512..885 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:36 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9331748..9331895 1..148 100   Minus
3R 9331320..9331682 149..511 99 <- Minus
3R 9330883..9331256 512..885 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:14:15 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5156605..5156978 512..885 99 <- Minus
arm_3R 5157042..5157404 149..511 99 <- Minus
arm_3R 5157470..5157617 1..148 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:44 Download gff for RE08710.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9071714..9072087 512..885 99 <- Minus
3R 9072151..9072513 149..511 99 <- Minus
3R 9072579..9072726 1..148 100   Minus

RE08710.hyp Sequence

Translation from 0 to 813

> RE08710.hyp
FLAEKMSRNQDLCLAVFALLTTAGISHGAPQMGRVVNGTDSSVEKYPFVI
SMRGSSGSHSCGGSIISKQFVMTAAHCTDGRKASDLSVQYGVTKINATGP
NVVRVKKIIQHEDYNPYNNYANDISLLLVEEPFEFDGVTVAPVKLPELAF
ATPQTDAGGEGVLIGWGLNATGGYIQSTLQEVELKVYSDEECTERHGGRT
DPRYHICGGVDEGGKGQCSGDSGGPLIYNGQQVGIVSWSIKPCTVAPYPG
VYCKVSQYVDWIKKSQIILA*

RE08710.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG16749-PA 265 CG16749-PA 1..265 6..270 1408 100 Plus
CG12951-PA 265 CG12951-PA 1..265 6..270 1088 75.8 Plus
CG32808-PA 284 CG32808-PA 7..255 14..262 560 47.2 Plus
etaTry-PA 262 CG12386-PA 9..258 14..266 385 36 Plus
CG31954-PA 277 CG31954-PA 49..273 33..264 382 40.5 Plus

RE08710.pep Sequence

Translation from 16 to 813

> RE08710.pep
MSRNQDLCLAVFALLTTAGISHGAPQMGRVVNGTDSSVEKYPFVISMRGS
SGSHSCGGSIISKQFVMTAAHCTDGRKASDLSVQYGVTKINATGPNVVRV
KKIIQHEDYNPYNNYANDISLLLVEEPFEFDGVTVAPVKLPELAFATPQT
DAGGEGVLIGWGLNATGGYIQSTLQEVELKVYSDEECTERHGGRTDPRYH
ICGGVDEGGKGQCSGDSGGPLIYNGQQVGIVSWSIKPCTVAPYPGVYCKV
SQYVDWIKKSQIILA*

RE08710.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17772-PA 266 GF17772-PA 1..266 1..265 1175 82.3 Plus
Dana\GF17773-PA 263 GF17773-PA 1..262 1..262 1055 73.3 Plus
Dana\GF21275-PA 281 GF21275-PA 9..252 7..257 561 45.7 Plus
Dana\GF14668-PA 279 GF14668-PA 46..275 24..259 381 39.7 Plus
Dana\GF11616-PA 379 GF11616-PA 133..362 29..258 372 38.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17383-PA 266 GG17383-PA 1..266 1..265 1243 86.5 Plus
Dere\GG17384-PA 266 GG17384-PA 1..258 1..258 1040 74.8 Plus
Dere\GG12696-PA 281 GG12696-PA 1..255 1..260 557 46 Plus
Dere\GG24433-PA 277 GG24433-PA 44..273 24..259 377 40.5 Plus
Dere\GG20381-PA 259 GG20381-PA 1..256 7..261 368 36.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22349-PA 262 GH22349-PA 15..262 19..265 980 73 Plus
Dgri\GH24469-PA 312 GH24469-PA 49..280 30..260 544 46 Plus
Dgri\GH22868-PA 268 GH22868-PA 31..261 28..257 386 37.4 Plus
Dgri\GH22923-PA 266 GH22923-PA 30..254 28..261 379 38.7 Plus
Dgri\GH22866-PA 255 GH22866-PA 25..251 25..260 365 37.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG16749-PA 265 CG16749-PA 1..265 1..265 1408 100 Plus
CG12951-PA 265 CG12951-PA 1..265 1..265 1088 75.8 Plus
CG32808-PA 284 CG32808-PA 7..255 9..257 560 47.2 Plus
etaTry-PA 262 CG12386-PA 9..258 9..261 385 36 Plus
CG31954-PA 277 CG31954-PA 49..273 28..259 382 40.5 Plus
CG5255-PA 273 CG5255-PA 29..250 29..258 379 37.1 Plus
CG4386-PA 372 CG4386-PA 126..355 29..258 378 38.5 Plus
lambdaTry-PA 272 CG12350-PA 34..256 28..257 369 37.8 Plus
CG17571-PB 258 CG17571-PB 4..251 7..257 354 34.4 Plus
CG17571-PA 258 CG17571-PA 4..251 7..257 354 34.4 Plus
CG8299-PA 260 CG8299-PA 5..254 7..259 354 34.1 Plus
Ser8-PA 260 CG4812-PA 9..257 9..261 352 37.9 Plus
CG1304-PA 260 CG1304-PA 8..256 7..260 339 33.7 Plus
kappaTry-PC 263 CG12388-PC 5..256 9..260 339 32.3 Plus
zetaTry-PA 280 CG12387-PA 37..273 28..257 338 33.7 Plus
CG3355-PA 314 CG3355-PA 69..305 23..260 338 35.7 Plus
CG18735-PA 364 CG18735-PA 82..314 29..260 332 35.5 Plus
thetaTry-PA 262 CG12385-PA 9..255 7..257 330 36.3 Plus
Try29F-PD 267 CG9564-PD 40..261 28..257 330 37.3 Plus
Try29F-PC 267 CG9564-PC 40..261 28..257 330 37.3 Plus
betaTry-PB 253 CG18211-PB 25..249 25..257 329 35.7 Plus
betaTry-PA 253 CG18211-PA 25..249 25..257 329 35.7 Plus
alphaTry-PA 256 CG18444-PA 25..249 25..257 329 34.9 Plus
Sb-PB 787 CG4316-PB 525..782 11..257 328 31.7 Plus
Sb-PA 787 CG4316-PA 525..782 11..257 328 31.7 Plus
Ser6-PA 259 CG2071-PA 30..255 28..259 323 34.3 Plus
CG11836-PI 281 CG11836-PI 44..273 29..260 319 33.3 Plus
CG11836-PJ 333 CG11836-PJ 96..325 29..260 319 33.3 Plus
epsilonTry-PA 256 CG18681-PA 8..252 9..260 317 33.5 Plus
l(2)k05911-PC 639 CG31728-PC 395..637 25..260 312 31.2 Plus
gammaTry-PA 253 CG30028-PA 25..249 25..257 308 35.4 Plus
CG30025-PA 253 CG30025-PA 25..249 25..257 308 35.4 Plus
deltaTry-PA 253 CG12351-PA 25..249 25..257 308 35.4 Plus
CG30031-PA 253 CG30031-PA 25..249 25..257 308 35.4 Plus
CG6041-PA 308 CG6041-PA 8..269 7..257 308 33.9 Plus
CG7432-PB 721 CG7432-PB 473..716 28..258 303 32.3 Plus
CG31265-PA 266 CG31265-PA 31..255 24..258 302 34.2 Plus
CG31269-PB 273 CG31269-PB 37..256 29..258 301 37.5 Plus
CG11836-PF 223 CG11836-PF 8..215 52..260 299 34.1 Plus
CG11836-PE 223 CG11836-PE 8..215 52..260 299 34.1 Plus
CG11836-PG 223 CG11836-PG 8..215 52..260 299 34.1 Plus
CG11836-PC 223 CG11836-PC 8..215 52..260 299 34.1 Plus
CG11836-PA 223 CG11836-PA 8..215 52..260 299 34.1 Plus
CG11836-PB 223 CG11836-PB 8..215 52..260 299 34.1 Plus
CG12256-PA 283 CG12256-PA 46..283 29..262 297 33.5 Plus
CG9294-PB 352 CG9294-PB 100..334 29..257 297 32 Plus
CG9372-PA 408 CG9372-PA 170..402 26..257 292 30.7 Plus
yip7-PA 270 CG6457-PA 38..267 28..260 291 34 Plus
CG10477-PB 272 CG10477-PB 38..265 28..258 291 33.5 Plus
CG10477-PA 272 CG10477-PA 38..265 28..258 291 33.5 Plus
Jon65Aiv-PA 271 CG6467-PA 36..266 28..258 289 31.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23606-PA 264 GI23606-PA 3..264 2..265 1037 75.8 Plus
Dmoj\GI16486-PA 321 GI16486-PA 61..293 26..260 560 45 Plus
Dmoj\GI17776-PA 280 GI17776-PA 47..276 28..259 398 40.8 Plus
Dmoj\GI17775-PA 275 GI17775-PA 47..271 28..259 390 39.7 Plus
Dmoj\GI23805-PA 280 GI23805-PA 47..276 28..259 386 40 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13734-PA 265 GL13734-PA 19..265 19..265 1083 80.6 Plus
Dper\GL14376-PA 282 GL14376-PA 3..254 7..260 528 45.5 Plus
Dper\GL17342-PA 280 GL17342-PA 35..270 29..257 370 38.4 Plus
Dper\GL19474-PA 274 GL19474-PA 46..270 28..259 362 38 Plus
Dper\GL20660-PA 260 GL20660-PA 5..254 7..259 358 34.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14124-PA 265 GA14124-PA 19..265 19..265 1079 80.2 Plus
Dpse\GA17154-PA 248 GA17154-PA 3..220 7..260 456 40.1 Plus
Dpse\GA11599-PA 280 GA11599-PA 35..270 29..257 371 38.4 Plus
Dpse\GA16585-PA 274 GA16585-PA 46..270 28..259 366 38.4 Plus
Dpse\GA11574-PA 269 GA11574-PA 34..256 28..260 364 37.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26269-PA 265 GM26269-PA 1..265 1..265 1322 92.5 Plus
Dsec\GM26270-PA 207 GM26270-PA 1..207 1..265 743 57.7 Plus
Dsec\GM18971-PA 287 GM18971-PA 7..258 9..260 566 45.5 Plus
Dsec\GM18144-PA 277 GM18144-PA 44..273 24..259 382 40.1 Plus
Dsec\GM15215-PA 273 GM15215-PA 6..250 7..258 375 36.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20805-PA 265 GD20805-PA 1..265 1..265 1369 96.6 Plus
Dsim\GD20806-PA 265 GD20806-PA 1..265 1..265 1069 74 Plus
Dsim\GD24635-PA 281 GD24635-PA 1..252 1..257 496 42.5 Plus
Dsim\GD22751-PA 277 GD22751-PA 44..273 24..259 382 40.1 Plus
Dsim\GD19145-PA 273 GD19145-PA 29..250 29..258 374 37.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23580-PA 265 GJ23580-PA 22..265 22..265 1075 80.3 Plus
Dvir\GJ16031-PA 289 GJ16031-PA 27..258 26..260 512 46.4 Plus
Dvir\GJ21494-PA 265 GJ21494-PA 8..253 7..261 389 37.6 Plus
Dvir\GJ17600-PA 276 GJ17600-PA 48..272 28..259 370 38.8 Plus
Dvir\GJ20595-PA 373 GJ20595-PA 127..356 29..258 365 38.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11729-PA 267 GK11729-PA 1..267 1..265 1093 76 Plus
Dwil\GK19691-PA 259 GK19691-PA 8..247 7..261 387 37.4 Plus
Dwil\GK15652-PA 366 GK15652-PA 120..349 29..258 376 38.5 Plus
Dwil\GK14673-PA 280 GK14673-PA 52..276 28..259 363 39.2 Plus
Dwil\GK12201-PA 260 GK12201-PA 15..236 29..258 362 37.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24786-PA 266 GE24786-PA 1..266 1..265 1366 97 Plus
Dyak\GE24788-PA 265 GE24788-PA 1..265 1..265 1098 75.8 Plus
Dyak\GE16525-PA 281 GE16525-PA 12..255 15..260 563 46.2 Plus
Dyak\GE14855-PA 277 GE14855-PA 44..273 24..259 380 39.7 Plus
Dyak\GE10113-PA 277 GE10113-PA 29..250 29..258 370 36.6 Plus