Clone RE08772 Report

Search the DGRC for RE08772

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:87
Well:72
Vector:pFlc-1
Associated Gene/TranscriptCG30419-RA
Protein status:RE08772.pep: gold
Preliminary Size:813
Sequenced Size:3821

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13573 2002-01-01 Sim4 clustering to Release 2
CG30419 2003-01-01 Sim4 clustering to Release 3
CG30419 2003-08-11 Blastp of sequenced clone
CG30419 2008-04-29 Release 5.5 accounting
CG30419 2008-08-15 Release 5.9 accounting
CG30419 2008-12-18 5.12 accounting

Clone Sequence Records

RE08772.complete Sequence

3821 bp (3821 high quality bases) assembled on 2003-08-11

GenBank Submission: BT010276

> RE08772.complete
AGTGGCTCGCTGACTTTGTGCTGTGAACTTCGACGCGCTGGAAGGTCCTG
CGAAGTTTTCGCATTTCCTTTGCTGGTGTGGAAGCGACGTGTTTTGTGAG
TGCGCGTGTGTGTGTCTGTGAGAGGGCGCCAACTTTTCGGTGAGACTTTA
ACCACCAGTAAACAACAACAAAGCAAAAACATTGACAAAAAAGCAAGAAA
GGCGGAAAGGACACAAGGACACAGCCTGCGGTCAGGGAAACCGCAATCAA
AAATTGTAAACAAACACTGGAAATCGAGCGAAATCAACAAAGGAAGTCGA
CGCCGCCCTGTAGGCAACGATTCCGCTGCTAGCCAACATGGAAATGGACG
TCAATCGCCCGACCGGCCGCCATGGCAACCTAATGACCATATCCGCCCGC
TGCTCCAACAACAATGCAGCCGAAGCCGGAGCCGGAGTTGGAGCCACCAG
GACTCCGGCCGCCGGAAGTGAGGCGCCGCCCAGCGGCTGCTGCGGCATCT
TGGGCCGCCTCCTCTGCGTGAGTCGCCACAAGGCCACGCAATCGGTGGCG
GGCAGCGATCCCTTCTCCCAGCTGCAGTTGCAGCGCAAGGGAGTCGCCAC
ACCTGCTGCCGTTTCCGGACAGCGACGCCGCCGGACGCCGCAGGAAATCT
ACTTCGAGAGTCGCGGCAAGTCCTGCAAGAAGCTGCTTAAATTCAATGGC
AATTCCAACAAGATACTGCTGTATCCCGAGGAGGGCTGGGCGAGGACCGC
CTCATCCAGTTACTGGACCATCACGCCCTGCTTCTGGCAGCCCAATCGCT
GCCGCATCGTCGAGTGCTCCGGAACCCAACGGCGCGCGACGAAAGCCCGG
ATGCTGCCGCTGGAGCAGCAGGGATCCCTCCTGATTGCCGGACACTTTCG
CCGGACGACGGCGGGGGGCGGAGGAGCTGCATCGCCAGCGGGGGGCGGGG
CATCGGGCAACGGTTCGGTGGCTGCCACGCCCACGCCCGCAATACCTGCC
GATGCAATCCGGACGGGGTCAACGGGCTGTGACAAGTCGCAGCCCGCGTG
GAACGACGAGTTCAAGCTGTATCTGACGTCGAACATCTCGATGGAGGACT
ACAACATGGGCTACTGCCTCACCGGATTCGTGGAGCGCCGCTGCCAGGTG
ACCAACACCTTCCAGATGACTCACTTTGCGGTCATCAAGCGCCAGTGGCC
ACCGTCGCCGTCCAACCTGGGCAACTCCTAAGGCCCGTGCATCCCACTTT
TGTAATTGTGATCCGACCTTTTGTTCCCAATTGGAAACGAAATGAAATTA
ACTAAGGGACAGTGGCTGTTTTCACTTTTAGAGAATTTTCTGAATATTTC
CAGAATGCAGAAATGTTCAGAAATTCAGAATGTTTGAGAGTGAGAACAGA
CACAGTCCTTTAATGCAGCAAATACCAATTAAGTTTTTAGCATCTAAGTA
GAGCCAAAATGTTTGTTGTGCAATCCCGAACTAAAATCAAAAGAAGTTTC
GCCAGGTCTATAGAAAATGTAACATAAAATTGCCGAGGCGTCGAGAACCG
ATAGCCACTAGATCGTAAGGCTTAGAAAAGTATTGGCGGAGGGGATCTTT
AAGGACGTACTGCATTTGCCGTAGTTTTACGAAATTTTCTGCATGTTTAG
TGCGTAAATTGTAATTTTAACTAAATGTGCAACAGAAATCCGAAAATAAG
GAGGAAACTAGGAAACAAAAACTTTACGTGTGCTTTCAGTGTTGTGTAAT
ATGAAAAACGGAAACAAACCGGAAAAAATAAGCGAAAAAACCAAATACTA
GTAACTGTTAAATGCTAAATGAAACTAAACCGCTTTGCCAACTCTCACAC
ACACACACAGCAACACATAGTAGCACCAACACGCAGGCACCCACTTACAC
ACTCGCACACTTAAGCCTGGACGGCTACTTAATGCTTCAAAAAGTGCAAC
AAATTGAAACTTGTGCTTGTCGAAGCATGTGATTGTGAGTGCTCCACTGT
AAGCTGCTATGCTATAGTATACAAGTTTACGAGGCTGTGTGTGTGTGTGT
GTGCGAGCTGGTACTCTTTTCTACTACATACGAATATGTACTTTAACGGC
CATGTTTGCGAAACCTATTGCCTTTAAGCTTTAAAATATAAGCACAACTC
AACGCAGGCAAGCAAGTCAAAAGCTTCGAGCGATGGCCATTGGCACTGAG
CAGCAGTTTGATGACGAGCGAGCATTAAAGTTAATTATTTAACGAGCTGT
TTAAGGCAAACAAACATGTTAAAGCCGATTTGCTGTTTTTAGCTCTCTGC
ATGGGCACATTGCACCCTAGGCATGCTTCTCTTGGAGCCTTGGTCACACT
GCTATTCATATGATATGGAATGCGTGGAAAGCGTGTGGAATAAGTTCTAG
AAACCTGCTGATTAGTGCCACTGGCCATTTAGCCGACTCGTCCAAAACCG
AGTTTGCCAACTCTACGCTAATCTAAGGAACTAAACCTCTAACTCTCTCT
CTCTATCTTTCTCTCACTAACTCACTAACCCACTGACCCACTCGTGCTAC
GGCTCTATCCCTCTTATTCACTCACTTTGAGCATGATACGCAACGTATAT
CAACAATTCGTCCAATGATTGGAGTCTTTTGGCGCCACAAATTGCCACGT
GTCAAGTTGGTAAGGCCGGAGCTCCAATTGCCAAAAACCCTAAGTGTTAA
AAAACAATGAAACCAAACGTAAAGGAAACCAAAGCTAAGTCAAAACTCAA
CGTAGGCTAAGGATAGTTTAAAAATCCATATTTACAAGCTAGAATATGAA
TCTATATATATTATATAAATATATATCTATATATTTGTGTGTAGGCTGAA
CCTTTTTGCGTATATGTATATCTGTGTATTTGTATAACTGTATTGCGATT
GCATATACAATAACATTTTTGCCGTAGTTCGCATAGCTCGCTTTTAGGCG
CTTTTACACGCAAGCGAATAAGGCCGAAACCTCTTAACTCCCTTTTTTTG
CTTCACTCAAGATGTCCCTGCCACCCTGCCCCAAAAACTTATCGATATTT
AAGTATCAGGTACCTGCCACAATCAACACGAAAACCAAGTAAACAGAAAA
ACTCGAGTATACATAACTATTTATTGAACAATTACGTCTGTGCAAATATT
TGTGTCCATTTTAATTAGGGAGAATGCAAAGATTTCCAAAGAAGCATAGT
ATTTTTTAGGTAACGAAACACTCTGTCCCGAAAACCCGCAAATCGATGTC
GTACACCCGAGTTGTATAAATGTTTATTAGGGATTCTCGCTCTCTGTGTG
TAGCAAATACTTCTGCGCCAATGCTTAAAAACCCAACACAGACACGAGTT
GTTTGGCTTAAAGCTGAATGTCCATGTCCAAACCGAAACAAAACACGCAT
GAGCTTTTTTGTAGTTCTATTTAAACACTTTAAATAGCAAACGAGTCAAC
AAACAATTCCGTGCTGCGGAGCACGGGGAATAAATTAATGTTAAGCTTCT
ATCGAAATAAGCGATGTAAGCGAGCATAATTAGTCTAATCGAGAGATAAG
GTAAAGCGGTAGAAAAAAAACGCCAGCAAAAAGCAAATCAAATCAGACGG
AAATGCAAAATGCAAATGAAAATATAAATCGAAATCAAACACGCCGCTCT
GTTAATGCAAGTGCATAAATCAAAAGCGAATAAGGCCTCGGCAAATGCAA
TTTGAGCTGGCATTCGGATTCGTGTAATGAAAATAAATACCCCAAAGGTA
TGTAGAGTGCAGTTGAACATGGGAAATCAAAACATTGAAAATAAAAAAAA
GGAAAGCAAAAAAAAAAAAAA

RE08772.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG30419.a 3851 CG30419.a 17..3822 3..3808 19015 99.9 Plus
CG30419.b 2858 CG30419.b 17..2858 3..2844 14195 99.9 Plus
CG30419.c 1725 CG30419.c 17..1725 3..1711 8545 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20098497..20101598 3807..711 15155 99.5 Minus
chr2R 21145070 chr2R 20115106..20115815 712..3 3475 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:31:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24212490..24215587 3808..711 15475 100 Minus
2R 25286936 2R 24229079..24229788 712..3 3550 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24213689..24216786 3808..711 15475 99.9 Minus
2R 25260384 2R 24230278..24230987 712..3 3550 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:33:52 has no hits.

RE08772.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:34:37 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20098512..20101596 713..3792 98 <- Minus
chr2R 20115106..20115818 1..712 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:09:24 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 1..894 338..1231 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:52:47 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 1..894 338..1231 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:01:53 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 1..894 338..1231 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:18:27 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 1..894 338..1231 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:49 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 1..894 338..1231 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:09:23 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 1..1232 1..1231 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:52:47 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 1..3790 3..3792 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:01:53 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 5..3797 1..3792 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:18:27 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 1..1232 1..1231 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:49 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
CG30419-RA 5..3797 1..3792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:37 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24212506..24215585 713..3792 99 <- Minus
2R 24229079..24229791 1..712 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:37 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24212506..24215585 713..3792 99 <- Minus
2R 24229079..24229791 1..712 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:34:37 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24212506..24215585 713..3792 99 <- Minus
2R 24229079..24229791 1..712 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:01:53 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20100029..20103108 713..3792 99 <- Minus
arm_2R 20116602..20117314 1..712 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:52:39 Download gff for RE08772.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24213723..24216802 713..3792 99 <- Minus
2R 24230296..24231008 1..712 99   Minus

RE08772.hyp Sequence

Translation from 337 to 1230

> RE08772.hyp
MEMDVNRPTGRHGNLMTISARCSNNNAAEAGAGVGATRTPAAGSEAPPSG
CCGILGRLLCVSRHKATQSVAGSDPFSQLQLQRKGVATPAAVSGQRRRRT
PQEIYFESRGKSCKKLLKFNGNSNKILLYPEEGWARTASSSYWTITPCFW
QPNRCRIVECSGTQRRATKARMLPLEQQGSLLIAGHFRRTTAGGGGAASP
AGGGASGNGSVAATPTPAIPADAIRTGSTGCDKSQPAWNDEFKLYLTSNI
SMEDYNMGYCLTGFVERRCQVTNTFQMTHFAVIKRQWPPSPSNLGNS*

RE08772.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30419-PA 297 CG30419-PA 1..297 1..297 1586 100 Plus

RE08772.pep Sequence

Translation from 337 to 1230

> RE08772.pep
MEMDVNRPTGRHGNLMTISARCSNNNAAEAGAGVGATRTPAAGSEAPPSG
CCGILGRLLCVSRHKATQSVAGSDPFSQLQLQRKGVATPAAVSGQRRRRT
PQEIYFESRGKSCKKLLKFNGNSNKILLYPEEGWARTASSSYWTITPCFW
QPNRCRIVECSGTQRRATKARMLPLEQQGSLLIAGHFRRTTAGGGGAASP
AGGGASGNGSVAATPTPAIPADAIRTGSTGCDKSQPAWNDEFKLYLTSNI
SMEDYNMGYCLTGFVERRCQVTNTFQMTHFAVIKRQWPPSPSNLGNS*

RE08772.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13469-PA 317 GF13469-PA 1..317 1..297 1140 76.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19944-PA 294 GG19944-PA 1..294 1..297 1523 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20909-PA 303 GH20909-PA 1..290 1..287 931 68 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30419-PA 297 CG30419-PA 1..297 1..297 1586 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18347-PA 316 GI18347-PA 1..316 1..297 932 64.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20522-PA 363 GL20522-PA 1..363 1..297 828 55.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25119-PA 306 GA25119-PA 1..306 1..297 1040 70.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18262-PA 297 GM18262-PA 1..297 1..297 1559 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24967-PA 188 GD24967-PA 14..188 123..297 923 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20744-PA 300 GJ20744-PA 1..288 1..287 951 68.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15809-PA 310 GK15809-PA 1..310 1..297 959 66.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11473-PA 294 GE11473-PA 1..294 1..297 1488 95.3 Plus