BDGP Sequence Production Resources |
Search the DGRC for RE08808
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 88 |
Well: | 8 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Cpr51A-RA |
Protein status: | RE08808.pep: gold |
Preliminary Size: | 639 |
Sequenced Size: | 677 |
Gene | Date | Evidence |
---|---|---|
CG10112 | 2001-12-14 | Blastp of sequenced clone |
CG10112 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10112 | 2003-01-01 | Sim4 clustering to Release 3 |
Cpr51A | 2008-04-29 | Release 5.5 accounting |
Cpr51A | 2008-08-15 | Release 5.9 accounting |
Cpr51A | 2008-12-18 | 5.12 accounting |
677 bp (677 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070997
> RE08808.complete GATCCACAGTCCAAAGTCGCTTGCAGCGAAATACATCTATCCATACCCAG TGCACAGAAAGTTGAAACACCCCAGAAAATATGTACAAATTCGTGTTGAT CGCCAGCCTGCTGGTCGCCCTCTGCATGGCAGCTCCTCCCCGCCAGGAAT CCGAAGCCGAAAGGATAGAGAGGGAGGAGTACGAGAAATATCAGAATGAA AACGCCCAGTACTCGTTCAATTCGAGTGTGGATGATAAGATCAACGATGG ACAAATCTCACGTAATGAGGAGCGCGAAGGAGGCACTGTTCGTGGTTCCT ACAGCTACTTCGATGGTTTCGTGAAGCGCCGTGTTGAGTACATCGCCGAT AAGGACGGCTACAGGGTGCTCAAGGACGAGATCGAGGATGTCGGCAATGG TCCTTCGTTCAATCCCGATGGCATAGCCAACGTGGAGGGCTCTATGATCG GCAAATACTCCATCAAACTGGATAAGGCCGACGATGACAAGCACTACAAG GACATTCATGCCTAGGGCAAAATGAACTGAGGATTTCTAACATTTAGAAA CGGACTGAATACTTTGTAGACCCCCAAAATAGAGTAAAACACAATCTGAA CAAAAAGTGTATTTCTTCTTCTCCCAAATAAAATATTGAAAAAACTTTAA AAAAAAAAAAGAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10399862..10400369 | 141..648 | 100 | <- | Minus |
chr2R | 10402372..10402511 | 1..140 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr51A-RA | 1..435 | 81..515 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr51A-RA | 1..435 | 81..515 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr51A-RA | 1..435 | 81..515 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr51A-RA | 1..435 | 81..515 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr51A-RA | 1..435 | 81..515 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr51A-RA | 1..648 | 1..648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr51A-RA | 1..648 | 1..648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr51A-RA | 4..651 | 1..648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr51A-RA | 1..648 | 1..648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cpr51A-RA | 4..651 | 1..648 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14515069..14515208 | 1..140 | 100 | Minus | |
2R | 14512559..14513066 | 141..648 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14515069..14515208 | 1..140 | 100 | Minus | |
2R | 14512559..14513066 | 141..648 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14515069..14515208 | 1..140 | 100 | Minus | |
2R | 14512559..14513066 | 141..648 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10402574..10402713 | 1..140 | 100 | Minus | |
arm_2R | 10400064..10400571 | 141..648 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14513758..14514265 | 141..648 | 100 | <- | Minus |
2R | 14516268..14516407 | 1..140 | 100 | Minus |
Translation from 80 to 514
> RE08808.hyp MYKFVLIASLLVALCMAAPPRQESEAERIEREEYEKYQNENAQYSFNSSV DDKINDGQISRNEEREGGTVRGSYSYFDGFVKRRVEYIADKDGYRVLKDE IEDVGNGPSFNPDGIANVEGSMIGKYSIKLDKADDDKHYKDIHA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cpr51A-PA | 144 | CG10112-PA | 1..144 | 1..144 | 750 | 100 | Plus |
Translation from 80 to 514
> RE08808.pep MYKFVLIASLLVALCMAAPPRQESEAERIEREEYEKYQNENAQYSFNSSV DDKINDGQISRNEEREGGTVRGSYSYFDGFVKRRVEYIADKDGYRVLKDE IEDVGNGPSFNPDGIANVEGSMIGKYSIKLDKADDDKHYKDIHA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11348-PA | 143 | GF11348-PA | 1..143 | 1..144 | 601 | 79.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22420-PA | 144 | GG22420-PA | 1..144 | 1..144 | 685 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21122-PA | 144 | GH21122-PA | 1..141 | 1..141 | 459 | 63.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cpr51A-PA | 144 | CG10112-PA | 1..144 | 1..144 | 750 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18726-PA | 137 | GI18726-PA | 1..135 | 1..142 | 411 | 56.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10644-PA | 140 | GL10644-PA | 1..140 | 1..144 | 531 | 70.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10081-PA | 140 | GA10081-PA | 1..140 | 1..144 | 531 | 70.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20207-PA | 144 | GM20207-PA | 1..144 | 1..144 | 674 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25677-PA | 144 | GD25677-PA | 1..144 | 1..144 | 671 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21745-PA | 144 | GJ21745-PA | 1..138 | 1..140 | 412 | 55.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15739-PA | 141 | GK15739-PA | 1..141 | 1..144 | 435 | 59 | Plus |
Dwil\GK15738-PA | 137 | GK15738-PA | 1..137 | 1..144 | 411 | 57.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12309-PA | 144 | GE12309-PA | 1..144 | 1..144 | 658 | 84.7 | Plus |