Clone RE08857 Report

Search the DGRC for RE08857

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:88
Well:57
Vector:pFlc-1
Associated Gene/TranscriptMob3-RA
Protein status:RE08857.pep: gold
Preliminary Size:834
Sequenced Size:926

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4946 2002-01-01 Sim4 clustering to Release 2
CG4946 2003-01-01 Sim4 clustering to Release 3
CG4946 2003-01-24 Blastp of sequenced clone
CG4946 2008-04-29 Release 5.5 accounting
Mob3 2008-08-15 Release 5.9 accounting
Mob3 2008-12-18 5.12 accounting

Clone Sequence Records

RE08857.complete Sequence

926 bp (926 high quality bases) assembled on 2003-01-24

GenBank Submission: AY071000

> RE08857.complete
TGGGTTTCTCCCATCTCTCCATCGGCATAAAAATACAGAATAGTCTAAGG
AACTGAATAAATGTAAACATTATTTATAAACAGCCATTAATAGTTATTCA
ATTGACAAACTTTTGTGCTGTAAGCAGCGCTTACATATGTGCCAAAATAT
TCTCACAACCAACAGAATCTCCAACAAGATATTATGGCTTTAAATGGATT
TTTAGAGTTCTTCCAAAAGGGCAAGACCTTTAGGCCAAAAAAGCCATTTG
CCTCCGGAACCATTAGGTATTCCTTACATAAGCAAGCCCAGGCCAGTTTG
CAATCCGGGATTAATCTGCGGCAAGTGGTGCGTTTGCCGCAAGGGGAGAA
TCTCAACGACTGGCTAGCTGTGCACGTTGTGGACTTCTTCAATCGCATAA
ACTTGATCTACGGCACCGTTTCGGAGTTTTGCAACGAAACTACGTGTCCC
ACGATGTCTGGCGGTTCCAGATATGAGTACTTATGGGCCGATGGAGATCT
ATACAAAAAGCCAACCGCCCTTTCAGCCCAAAAGTACATTGAGCATTTAA
TGGACTGGATTGAGACACAAATTAACAACGAAGCTGTTTTTCCAGTGTCC
ACGGATGTTCCATTTCCCAAGAACTTCATAGCAATAAGTCGTAAAATTTT
AACCCGTCTTTTTCGTGTTTTCGTCCACGTCTATATTCACCATTTCGATC
GGATTGTGAGCATTGGAGCGGAAGCTCACGTGAATGCCTGCTACAAACAT
TTTTACTACTTTGTGCAAGAATTTGACATGATTTCGGCCAAGGAATTGGA
ACCCCTACAAGAAATGACATCTCGAATTTGCAAGGATAAGGATTGAAAGT
AATTCGTACTAGATTGTGATGTAAATATGTATTGTTTATTACAAAATAAA
TAAGCGAACACAAAAAAAAAAAAAAA

RE08857.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-RA 1085 Mob3-RA 103..1014 3..914 4545 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10264195..10264417 3..225 1100 99.6 Plus
chr2L 23010047 chr2L 10265235..10265426 720..911 960 100 Plus
chr2L 23010047 chr2L 10264475..10264627 224..376 765 100 Plus
chr2L 23010047 chr2L 10264682..10264806 376..500 625 100 Plus
chr2L 23010047 chr2L 10265053..10265170 604..721 590 100 Plus
chr2L 23010047 chr2L 10264863..10264966 501..604 520 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:31:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10265339..10265561 3..225 1100 99.6 Plus
2L 23513712 2L 10266379..10266573 720..914 975 100 Plus
2L 23513712 2L 10265619..10265771 224..376 765 100 Plus
2L 23513712 2L 10265826..10265950 376..500 625 100 Plus
2L 23513712 2L 10266197..10266314 604..721 590 100 Plus
2L 23513712 2L 10266007..10266110 501..604 520 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10265339..10265561 3..225 1100 99.5 Plus
2L 23513712 2L 10266379..10266573 720..914 975 100 Plus
2L 23513712 2L 10265619..10265771 224..376 765 100 Plus
2L 23513712 2L 10265826..10265950 376..500 625 100 Plus
2L 23513712 2L 10266197..10266314 604..721 590 100 Plus
2L 23513712 2L 10266007..10266110 501..604 520 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:03:25 has no hits.

RE08857.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:04:40 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10264194..10264417 1..225 99 -> Plus
chr2L 10264477..10264627 226..376 100 -> Plus
chr2L 10264683..10264806 377..500 100 -> Plus
chr2L 10264863..10264966 501..604 100 -> Plus
chr2L 10265054..10265169 605..720 100 -> Plus
chr2L 10265236..10265426 721..911 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:51:42 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 1..663 184..846 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:38:31 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 1..663 184..846 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:06:44 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 1..663 184..846 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:15:23 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 1..663 184..846 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:24 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 1..663 184..846 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:42:58 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 2..910 3..911 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:38:31 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 1..909 3..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:44 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 3..912 1..911 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:15:23 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 2..910 3..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:24 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 3..912 1..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:40 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10265338..10265561 1..225 99 -> Plus
2L 10265621..10265771 226..376 100 -> Plus
2L 10265827..10265950 377..500 100 -> Plus
2L 10266007..10266110 501..604 100 -> Plus
2L 10266198..10266313 605..720 100 -> Plus
2L 10266380..10266570 721..911 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:40 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10265338..10265561 1..225 99 -> Plus
2L 10265621..10265771 226..376 100 -> Plus
2L 10265827..10265950 377..500 100 -> Plus
2L 10266007..10266110 501..604 100 -> Plus
2L 10266198..10266313 605..720 100 -> Plus
2L 10266380..10266570 721..911 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:04:40 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10265338..10265561 1..225 99 -> Plus
2L 10265621..10265771 226..376 100 -> Plus
2L 10265827..10265950 377..500 100 -> Plus
2L 10266007..10266110 501..604 100 -> Plus
2L 10266198..10266313 605..720 100 -> Plus
2L 10266380..10266570 721..911 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:44 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10265827..10265950 377..500 100 -> Plus
arm_2L 10265338..10265561 1..225 99 -> Plus
arm_2L 10265621..10265771 226..376 100 -> Plus
arm_2L 10266007..10266110 501..604 100 -> Plus
arm_2L 10266198..10266313 605..720 100 -> Plus
arm_2L 10266380..10266570 721..911 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:51:16 Download gff for RE08857.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10265827..10265950 377..500 100 -> Plus
2L 10266007..10266110 501..604 100 -> Plus
2L 10266198..10266313 605..720 100 -> Plus
2L 10266380..10266570 721..911 100   Plus
2L 10265338..10265561 1..225 99 -> Plus
2L 10265621..10265771 226..376 100 -> Plus

RE08857.hyp Sequence

Translation from 183 to 845

> RE08857.hyp
MALNGFLEFFQKGKTFRPKKPFASGTIRYSLHKQAQASLQSGINLRQVVR
LPQGENLNDWLAVHVVDFFNRINLIYGTVSEFCNETTCPTMSGGSRYEYL
WADGDLYKKPTALSAQKYIEHLMDWIETQINNEAVFPVSTDVPFPKNFIA
ISRKILTRLFRVFVHVYIHHFDRIVSIGAEAHVNACYKHFYYFVQEFDMI
SAKELEPLQEMTSRICKDKD*

RE08857.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-PA 220 CG4946-PA 1..220 1..220 1170 100 Plus
mats-PC 219 CG13852-PC 3..211 6..215 612 52.9 Plus
mats-PB 219 CG13852-PB 3..211 6..215 612 52.9 Plus
mats-PA 219 CG13852-PA 3..211 6..215 612 52.9 Plus
Mob2-PC 431 CG11711-PC 35..200 44..211 322 35.7 Plus

RE08857.pep Sequence

Translation from 183 to 845

> RE08857.pep
MALNGFLEFFQKGKTFRPKKPFASGTIRYSLHKQAQASLQSGINLRQVVR
LPQGENLNDWLAVHVVDFFNRINLIYGTVSEFCNETTCPTMSGGSRYEYL
WADGDLYKKPTALSAQKYIEHLMDWIETQINNEAVFPVSTDVPFPKNFIA
ISRKILTRLFRVFVHVYIHHFDRIVSIGAEAHVNACYKHFYYFVQEFDMI
SAKELEPLQEMTSRICKDKD*

RE08857.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15759-PA 220 GF15759-PA 1..220 1..220 1177 97.7 Plus
Dana\GF18448-PA 221 GF18448-PA 1..213 1..215 628 52.1 Plus
Dana\GF24543-PA 545 GF24543-PA 139..304 44..211 332 35.7 Plus
Dana\GF13799-PA 223 GF13799-PA 53..206 44..205 148 23.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10099-PA 220 GG10099-PA 1..220 1..220 1191 99.5 Plus
Dere\GG11134-PA 219 GG11134-PA 3..211 6..215 624 52.9 Plus
Dere\GG13915-PA 542 GG13915-PA 135..300 44..211 332 35.7 Plus
Dere\GG10811-PA 223 GG10811-PA 53..206 44..205 149 23.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13517-PA 220 GH13517-PA 1..220 1..220 1116 91.4 Plus
Dgri\GH13388-PA 219 GH13388-PA 3..211 6..215 625 52.4 Plus
Dgri\GH16639-PA 504 GH16639-PA 67..232 44..211 329 35.7 Plus
Dgri\GH20146-PA 223 GH20146-PA 53..206 44..205 150 23.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-PA 220 CG4946-PA 1..220 1..220 1170 100 Plus
mats-PC 219 CG13852-PC 3..211 6..215 612 52.9 Plus
mats-PB 219 CG13852-PB 3..211 6..215 612 52.9 Plus
mats-PA 219 CG13852-PA 3..211 6..215 612 52.9 Plus
Mob2-PC 431 CG11711-PC 35..200 44..211 322 35.7 Plus
Mob2-PE 537 CG11711-PE 141..306 44..211 322 35.7 Plus
Mob2-PB 537 CG11711-PB 141..306 44..211 322 35.7 Plus
Mob2-PD 566 CG11711-PD 170..335 44..211 322 35.7 Plus
Mob2-PA 728 CG11711-PA 332..497 44..211 322 35.7 Plus
Mob4-PB 227 CG3403-PB 53..210 44..205 155 24.4 Plus
Mob4-PA 223 CG3403-PA 53..206 44..205 149 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18135-PA 221 GI18135-PA 1..220 1..220 1105 90.5 Plus
Dmoj\GI22385-PA 219 GI22385-PA 3..211 6..215 631 52.9 Plus
Dmoj\GI11596-PA 1030 GI11596-PA 142..307 44..211 322 35.7 Plus
Dmoj\GI20237-PA 223 GI20237-PA 53..206 44..205 150 23.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18994-PA 220 GL18994-PA 1..220 1..220 1099 90 Plus
Dper\GL24215-PA 219 GL24215-PA 3..211 6..215 625 52.4 Plus
Dper\GL22820-PA 395 GL22820-PA 1..116 91..211 170 32.2 Plus
Dper\GL10986-PA 223 GL10986-PA 53..206 44..205 146 22.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26541-PA 219 GA26541-PA 3..211 6..215 625 52.4 Plus
Dpse\GA11155-PA 562 GA11155-PA 131..296 44..211 332 35.7 Plus
Dpse\GA17429-PA 223 GA17429-PA 53..206 44..205 146 22.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18081-PA 220 GM18081-PA 1..220 1..220 1191 99.1 Plus
Dsec\GM26432-PA 219 GM26432-PA 3..211 6..215 623 52.9 Plus
Dsec\GM24744-PA 564 GM24744-PA 134..299 44..211 331 35.7 Plus
Dsec\GM20860-PA 223 GM20860-PA 53..206 44..205 149 23.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23671-PA 220 GD23671-PA 1..220 1..220 1185 98.6 Plus
Dsim\GD20949-PA 219 GD20949-PA 3..211 6..215 623 52.9 Plus
Dsim\GD12801-PA 540 GD12801-PA 141..306 44..211 332 35.7 Plus
Dsim\GD10311-PA 223 GD10311-PA 53..206 44..205 157 24.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14867-PA 220 GJ14867-PA 1..220 1..220 1109 90.5 Plus
Dvir\GJ24418-PA 221 GJ24418-PA 1..213 1..215 630 52.6 Plus
Dvir\GJ11275-PA 560 GJ11275-PA 141..306 44..211 329 35.7 Plus
Dvir\GJ20189-PA 223 GJ20189-PA 53..206 44..205 150 23.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13074-PA 221 GK13074-PA 5..213 6..215 637 53.3 Plus
Dwil\GK18525-PA 106 GK18525-PA 1..106 1..106 516 87.7 Plus
Dwil\GK17021-PA 597 GK17021-PA 152..317 44..211 327 35.7 Plus
Dwil\GK23144-PA 224 GK23144-PA 53..206 44..205 146 23.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18913-PA 220 GE18913-PA 1..220 1..220 1191 99.5 Plus
Dyak\GE10299-PA 219 GE10299-PA 3..211 6..215 623 52.9 Plus
Dyak\GE20209-PA 539 GE20209-PA 133..298 44..211 332 35.7 Plus
Dyak\GE24587-PA 223 GE24587-PA 53..206 44..205 150 23.5 Plus