Clone RE08932 Report

Search the DGRC for RE08932

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:89
Well:32
Vector:pFlc-1
Associated Gene/TranscriptCG31259-RA
Protein status:RE08932.pep: gold
Preliminary Size:2667
Sequenced Size:1933

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31259 2001-12-14 Blastp of sequenced clone
CG11740 2002-01-01 Sim4 clustering to Release 2
CG31259 2003-01-01 Sim4 clustering to Release 3
CG31259 2008-04-29 Release 5.5 accounting
CG31259 2008-08-15 Release 5.9 accounting
CG31259 2008-12-18 5.12 accounting

Clone Sequence Records

RE08932.complete Sequence

1933 bp (1933 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071002

> RE08932.complete
TGGGACCGTACTTGGCCAAATCGGCAGTCAGTTGTATTTGATGGCCGACC
AGGCCATAACGTGGTTTCCTAGTAGGAGAAAATATTATTAAATAACCAAC
GTGCCATAACAACTAAATAAACAACCAATGCTAGTTCCTTGCTGAAGCTT
GTCGTATTTTTTAGTTGACATATATGCAGCTGAGACCAAGTGGATAACAA
GCTGCAGCTGATTCGAGGAATGCCCAGCGTCATTTACTGCGAATCGAGCA
ATTTGGATCATCGAATTTTTAACTGCATTCATTAGATTTTCAAGCTGAAA
TTACACTGGATTAATCGTAAGTCCGGGAAATCGAGTTGAACTAGGCCATT
GTGGACATTGCGTGCCACGTTCGAACTTTTGGCGATAAGCCCCTTCTCGA
TAAGCTTTATCATCCCCACGAAGCCAATTCGTTAATCGTCGACGGCGGAG
CATAAGTCAATATTCAAAGTGGATCATGGGCGCCCAAAGTAAACTGGCCG
AGATAGCCTTGAACTGCACCTGCTATGAGTATCACCATCCGTGGACAAAG
AGCTGTGCCTGCGCTGCGGCAGGAATGATGATCTCTGAGATCCCTCCCAG
TCTGCGCACCTACGCCACTGTATACGTGTTTGCTCTAATCATGCGAGGAC
GCATTCCATCGCTGAAGGATCTGAGACGCACTGCATCTGGAATCCTACAG
TCGACAGCGTTTCTTTCGATGAATGGAGGCCTCTTTGTCTTTGCCGTGTG
CTACTTGCGACAGATCTTGGGAGGATTCTACTTCGGCACAGTTGCTTGGC
TGCCCTCGTTTTTGGCCAGCTTTGCATGTCTTGCCTTCGAGCGTCCGGAA
CGCCGTGCTCCTCTCGCATTGTATGTGGCCAATGTGGGTATCGAAACGCT
GTGGAAGATGATGGAGGCACGAGGCTGGGTTCGATCCATTCCTAATGGAC
AGGTGTTCATCATGGGTGCAAGTGTGACCGCCTTGATGTATTTATATCGC
GCCGGATTGCACAAGACAGTGGCCAAGGATCCGACGTTCAAGGCTATTGC
CCTGATCGTGGGCAAAGAGGACGAGGGTCCACTGAAGACACCGGTGGTCA
CCACCACGCAAAGCTCTCGCCAGGCTCCCCTCAACTTCCAAAGCATTTCA
GCCTACGTACAGCTCTATGACCGCATGCTGAAGGCCAAACATCCAAGTTG
TCCCCACAAGAGGGGCTGTGTTCCCTACGCCCTTATTGGAGGACTAAAGC
CATTCCTGGGCGGTGTTGGCCTATCGGTGGGTCTAAAGCTGCTGCTCAAC
ATTCCCAAGATCTTTAAGTCTAAGATGCAGTGGCGCAAGCACATCTTCAA
CGGGGGATCCTTGCAGTTGGGATTGGCGCTGGGCATCTTCTCATTTCTTT
TCAAGTCGACTACCTGCGGACTGCGTCACACGTTTGGTTTCGACAATGCT
CTCTTCGCCATTCCGGCTGGCCTCATCGGATCGATTGGCTTCTTCCGTTT
CCCGAACACCACGGTGGCCTGTTATCTAATGTGGAAGTCCATGCATCTGC
TCTACAACTGGGGCATCGCGGAGGGCAAGTTGCCCGAGGTGCCGCACTTT
GCGATGCTCATGTACGGATTCTTCACGGCCGTGCTCTTCCACTCGGCAAT
CCTGGAGGCTCGTTCCCTGCGGCCCAGCTACTACAAGTTCCTCATGGGCA
TCTCCGGAAATCGCATCAGTCGCTTTAATGTGAAGCCCTTCGAGGCTTAC
GGACTGAAGAGCCAGGACCAGATCAACTATGTGATCAAGAAACTGGGCAT
CGACATGACCTCACCCTTCCCCCTTTACGCCCTGACTGTCTAGATGGGTT
TCCCCCATAACTTCGCATACCTACTGTACAGTAAAAAAAAAAAACAGAAA
CAATAAATGTGTAACACAAAAAAAAAAAAAAAA

RE08932.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259.a 2166 CG31259.a 250..2166 3..1919 9585 100 Plus
CG31259-RA 2211 CG31259-RA 250..2166 3..1919 9585 100 Plus
CG31454-RA 1993 CG31454-RA 896..1146 837..1087 580 82 Plus
CG31454-RA 1993 CG31454-RA 1381..1748 1322..1689 430 74.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4350717..4351494 628..1405 3890 100 Plus
chr3R 27901430 chr3R 4349905..4350530 3..628 3130 100 Plus
chr3R 27901430 chr3R 4351566..4352081 1404..1917 2515 99.6 Plus
chr3R 27901430 chr3R 4348278..4348985 698..1405 660 72.9 Plus
chr3R 27901430 chr3R 4349056..4349447 1422..1813 295 71.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:31:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8524760..8525537 628..1405 3890 100 Plus
3R 32079331 3R 8523948..8524573 3..628 3130 100 Plus
3R 32079331 3R 8525609..8526124 1404..1919 2580 100 Plus
3R 32079331 3R 8522321..8523028 698..1405 660 72.9 Plus
3R 32079331 3R 8523099..8523490 1422..1813 295 71.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8265591..8266368 628..1405 3890 100 Plus
3R 31820162 3R 8264779..8265404 3..628 3130 100 Plus
3R 31820162 3R 8266440..8266955 1404..1919 2580 100 Plus
3R 31820162 3R 8263291..8263541 837..1087 580 82 Plus
3R 31820162 3R 8263930..8264197 1422..1689 275 73.5 Plus
3R 31820162 3R 8263776..8263859 1322..1405 195 82.1 Plus
Blast to na_te.dros performed on 2019-03-16 16:29:44 has no hits.

RE08932.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:30:41 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4349903..4350530 1..628 99 -> Plus
chr3R 4350718..4351494 629..1405 100 -> Plus
chr3R 4351568..4352081 1406..1917 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:51:47 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 1..1368 476..1843 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:10:45 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 1..1368 476..1843 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:14:29 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 1..1368 476..1843 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:56 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 1..1368 476..1843 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:30:37 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 1..1368 476..1843 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:40:44 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 3..1917 3..1917 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:10:45 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 3..1917 3..1917 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:14:29 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 3..1919 1..1917 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:57 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 3..1917 3..1917 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:30:37 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
CG31259-RA 3..1919 1..1917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:41 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8523946..8524573 1..628 99 -> Plus
3R 8524761..8525537 629..1405 100 -> Plus
3R 8525611..8526122 1406..1917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:41 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8523946..8524573 1..628 99 -> Plus
3R 8524761..8525537 629..1405 100 -> Plus
3R 8525611..8526122 1406..1917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:41 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8523946..8524573 1..628 99 -> Plus
3R 8524761..8525537 629..1405 100 -> Plus
3R 8525611..8526122 1406..1917 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:14:29 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4349668..4350295 1..628 99 -> Plus
arm_3R 4350483..4351259 629..1405 100 -> Plus
arm_3R 4351333..4351844 1406..1917 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:12:11 Download gff for RE08932.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8264777..8265404 1..628 99 -> Plus
3R 8265592..8266368 629..1405 100 -> Plus
3R 8266442..8266953 1406..1917 100   Plus

RE08932.pep Sequence

Translation from 475 to 1842

> RE08932.pep
MGAQSKLAEIALNCTCYEYHHPWTKSCACAAAGMMISEIPPSLRTYATVY
VFALIMRGRIPSLKDLRRTASGILQSTAFLSMNGGLFVFAVCYLRQILGG
FYFGTVAWLPSFLASFACLAFERPERRAPLALYVANVGIETLWKMMEARG
WVRSIPNGQVFIMGASVTALMYLYRAGLHKTVAKDPTFKAIALIVGKEDE
GPLKTPVVTTTQSSRQAPLNFQSISAYVQLYDRMLKAKHPSCPHKRGCVP
YALIGGLKPFLGGVGLSVGLKLLLNIPKIFKSKMQWRKHIFNGGSLQLGL
ALGIFSFLFKSTTCGLRHTFGFDNALFAIPAGLIGSIGFFRFPNTTVACY
LMWKSMHLLYNWGIAEGKLPEVPHFAMLMYGFFTAVLFHSAILEARSLRP
SYYKFLMGISGNRISRFNVKPFEAYGLKSQDQINYVIKKLGIDMTSPFPL
YALTV*

RE08932.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17245-PA 455 GF17245-PA 1..453 1..453 1887 76.2 Plus
Dana\GF17244-PA 455 GF17244-PA 1..452 1..452 1170 47.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10970-PA 455 GG10970-PA 1..455 1..455 2271 92.7 Plus
Dere\GG10925-PA 455 GG10925-PA 1..455 1..455 1695 67.7 Plus
Dere\GG10884-PA 454 GG10884-PA 1..442 1..442 1182 49.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17372-PA 454 GH17372-PA 1..454 1..455 1568 60.9 Plus
Dgri\GH17371-PA 455 GH17371-PA 1..442 1..442 1187 49.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-PB 455 CG31259-PB 1..455 1..455 2389 100 Plus
CG31259-PA 455 CG31259-PA 1..455 1..455 2389 100 Plus
CG31454-PA 455 CG31454-PA 1..455 1..455 1648 67.3 Plus
CG11737-PC 455 CG11737-PC 1..452 1..452 1187 50.5 Plus
CG11737-PB 455 CG11737-PB 1..452 1..452 1187 50.5 Plus
CG11737-PA 455 CG11737-PA 1..452 1..452 1187 50.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23915-PA 455 GI23915-PA 1..455 1..455 1403 59.1 Plus
Dmoj\GI23914-PA 455 GI23914-PA 1..452 1..452 1200 49 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22288-PA 541 GL22288-PA 304..524 45..265 858 71.9 Plus
Dper\GL22288-PA 541 GL22288-PA 1..310 1..310 768 48.9 Plus
Dper\GL21411-PA 176 GL21411-PA 3..175 219..391 461 48 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16130-PA 455 GA16130-PA 1..455 1..455 1809 76.9 Plus
Dpse\GA11168-PA 455 GA11168-PA 1..452 1..452 1173 49.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23738-PA 455 GM23738-PA 1..455 1..455 2330 95.6 Plus
Dsec\GM23735-PA 455 GM23735-PA 1..454 1..454 1204 49.2 Plus
Dsec\GM23736-PA 228 GM23736-PA 1..227 1..227 811 66.1 Plus
Dsec\GM23737-PA 172 GM23737-PA 1..172 284..455 665 69.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18547-PA 455 GD18547-PA 1..455 1..455 2369 97.4 Plus
Dsim\GD18546-PA 455 GD18546-PA 1..455 1..455 1671 66.4 Plus
Dsim\GD18545-PA 455 GD18545-PA 1..452 1..452 1208 49.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24008-PA 452 GJ24008-PA 1..452 1..455 1553 64 Plus
Dvir\GJ24007-PA 455 GJ24007-PA 1..452 1..452 1192 48.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11589-PA 455 GK11589-PA 1..455 1..455 1673 66.6 Plus
Dwil\GK11588-PA 452 GK11588-PA 1..449 1..452 1158 46.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25882-PA 455 GE25882-PA 1..455 1..455 2311 94.3 Plus
Dyak\GE25881-PA 455 GE25881-PA 1..455 1..455 1729 69 Plus
Dyak\GE25880-PA 454 GE25880-PA 1..451 1..452 1199 49.7 Plus

RE08932.hyp Sequence

Translation from 475 to 1842

> RE08932.hyp
MGAQSKLAEIALNCTCYEYHHPWTKSCACAAAGMMISEIPPSLRTYATVY
VFALIMRGRIPSLKDLRRTASGILQSTAFLSMNGGLFVFAVCYLRQILGG
FYFGTVAWLPSFLASFACLAFERPERRAPLALYVANVGIETLWKMMEARG
WVRSIPNGQVFIMGASVTALMYLYRAGLHKTVAKDPTFKAIALIVGKEDE
GPLKTPVVTTTQSSRQAPLNFQSISAYVQLYDRMLKAKHPSCPHKRGCVP
YALIGGLKPFLGGVGLSVGLKLLLNIPKIFKSKMQWRKHIFNGGSLQLGL
ALGIFSFLFKSTTCGLRHTFGFDNALFAIPAGLIGSIGFFRFPNTTVACY
LMWKSMHLLYNWGIAEGKLPEVPHFAMLMYGFFTAVLFHSAILEARSLRP
SYYKFLMGISGNRISRFNVKPFEAYGLKSQDQINYVIKKLGIDMTSPFPL
YALTV*

RE08932.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31259-PB 455 CG31259-PB 1..455 1..455 2389 100 Plus
CG31259-PA 455 CG31259-PA 1..455 1..455 2389 100 Plus
CG31454-PA 455 CG31454-PA 1..455 1..455 1648 67.3 Plus
CG11737-PC 455 CG11737-PC 1..452 1..452 1187 50.5 Plus
CG11737-PB 455 CG11737-PB 1..452 1..452 1187 50.5 Plus