Clone RE09049 Report

Search the DGRC for RE09049

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:90
Well:49
Vector:pFlc-1
Associated Gene/Transcriptrdx-RE
Protein status:RE09049.pep: gold
Sequenced Size:3495

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12537 2003-01-01 Sim4 clustering to Release 3
CG9924 2005-03-04 Blastp of sequenced clone
rdx 2008-04-29 Release 5.5 accounting
rdx 2008-08-15 Release 5.9 accounting
rdx 2008-12-18 5.12 accounting

Clone Sequence Records

RE09049.complete Sequence

3495 bp (3495 high quality bases) assembled on 2005-03-04

GenBank Submission: BT021321

> RE09049.complete
ATTTTCGACGCGCACTTTCAAGCGGAGCGGTTCGTTCGTTTTGTGAGCGC
TCAACTCGATTCAATTCGATTGGATTCGCCATTCGCCTGCTCTCTCGCTT
CGTGTGTCGCCCCACCAAATACTATATAACTATAACTATAACATACAAAA
AAAAAAAGCAAAGAAAAATCAAATCAAATACTACTACTCGAAACAACAAA
ATCGAGCACACACTCGAAAATTATATACAAATCGTAAGGCAACTAAAATA
TCAAGCAAACGGCATGTGGCAACAAAGAGATTTGTGCAAATGAAAAATTT
TTAAGCACCAAAAAAGTTGAGCAATTTTTTACGCAAGCCAGGAGGAATCC
GTATATTTTATAATCAATTCAAATCAAATCAAAATACATAAATAAGGTGT
GTGAGTGTTTCGAAGTGTTTGCTATCAAAGTTGTAAAATGTTTGAGCCCT
ATGTGAAAATCAAGAAAAAGCGAAGTGTGAATGAAATCTATGAAAATGAG
AATTTAGAGCAACAGCAACATCATCTTCAGCAGCAGCAGCAGCAACCTGC
TACCAGCGATAATTGTTGCTGCGAGAACGGCGAGCCTCAGAATGCGCCTG
AAGTTGCAACTGCAACGGTAGCGGCAACATCTGTGGCAGCAACATCTGCG
GCAGCAACAGTCGCCACAGGAGCAGCGGCCAGCAGTAGCAGCAGCGGCAA
TTGCAGTCGCCTGCAGCAATTGATATCGACGCCACCAGTATTATTGCGCA
GATCGTCGCTGCAACAGCAGCAGCACCAGCAACAGCAACACCACCCACAC
ACGCCAGCAGCAACGGCAACACCACCGCAACAGCAGCAACAGCAGCAAGC
TGCGCCTTCGGTTTTGCAACAGCATTTGGGTCACCTGAATTACGAAAGTG
GAGCAACTGCAGCAGCAGCAGCAACAGCAGCGGCTGCAGCAGCAACAGTA
GCAACCAGTAGAAGTGGCTCGGCAACACTGGCGCAGCATTTGGCAACACC
CAGCAACATACTGCAGGCGGCATTCGGCAGCAGCAACTTGCAACACATAC
TAACGCGGTCCGCCCCCTCGCCCTCGTCCAGTGCGATTTCCTCCAACAAC
TGCAGCAGCGCCTGTGCGGGCAATACGCACTACAACGGTGGCAATAGCAA
CAGTGGCAGTAGCAGCAGCAACAGCAATCACCACAGCAACAGCATCATCG
CCAGCCGCCTGTTCGGAGCCGCCTCCTCCTCATCCTCCTCGTCCTCCTCC
TCCGCATCAGCATCCTCCTCGTCGGTGGCTGCCTCATCCTCTTCGTCGTC
ACACCATCTGCATAGCCATCATTCGGCGCTGACCAACTCCATAACGAATC
GCATCAATCAGTCCATCAGGCGGCATCTGAACCAGCAGCAACATCACCAT
CCCCTCAGTGCATCCTCGTCCTCCGCATCGGCATCTCCATCTGCATCCAC
ATCATCATCATCCTCCTATCAGCAATCGTCGGTACAACAGCAACATTATA
ATTGCGCCCATCCTGCACAGCAGCAGCAGCACCACCACCATCACCACAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCATCATCACCACAA
CAGCAGCAGCAGCAGCAACAGCAACAATCAACAGCAACCACAACAATCTC
CTCTGTGCCTAGTATTATTAGTTAAATGCCCCAATTCTAAGGAATTTTGT
AACGCCGCCGCAAATTTCTGTGATAAAAGATTGCCGGTGAACGAATGTCA
GGCAAGCCAAACAGCTAGAGTCACCTCGAACCTGCACGCATCCAGTAGCA
CGATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGAAGTTAATACG
CCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAAGTGGTTAAATTTAG
TTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAAGAAATGGGTG
AGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGACAAACTAAAA
TGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGAGCAAGGATTA
CCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCAGAAGTCAGAG
CCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGAAACCAAAGCA
ATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAGATTGGGGCTT
CAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCCAACGGCCTGC
TGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGTCGTGGCGGAC
AGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCAAAGTGCCCGA
ATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGACAACGAGAAGTTCA
GCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCCAGGCGCACAAGGCC
ATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATGTTCGAGCATGAGAT
GGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGATGTGGATCATGAGG
TTCTTAAAGAAATGCTGCGATTCATATACACGGGCAAGGCGCCCAATCTA
GAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGATAAGTATGCACTCGA
AAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGTCAATCTCTCTGTAG
AAACAGCAGCCGAAACCCTAATATTAGCTGATCTCCACAGTGCGGATCAA
TTGAAAGCACAAACGATAGATTTCATAAATACTCATGCCACCGATGTGAT
GGAAACCTCCGGCTGGCAAAATATGATCACAACACATTCACATTTGATAG
CGGAGGCATTTCGTGCGCTCGCAACACAACAAATCCCACCAATTGGACCA
CCAAGGAAACGCGTGAAAATGAGCTGAAACAACAATGCAACAACTACAAA
CACACCAACAACAATAATAATAATAATAACAACAACAACAACAAGAGCAA
CTACAATAACAACAGCAGCAACAATTCGTACACCAACAACAATCAACAAT
CAACAGCAAGAACAACCAGAACAACAACAAGTAACCCAAACTACTACAAC
CAACAATCGATTCAACAATCGCAACAGAAAGCAGAACTCCAGTCGATGCA
GTGGCCGCCATGTGAGATATCTGATGGATCGATTGGCGGAGAACCTCAAG
AATGCATACGGCGGCAATACTACAAACGCAATAGATTATGTTAAACGCAG
ACAGATAATGCAAATGCAGGAGCAAAAGCATAGCGAGCCGTACCGTTTAT
TGTTTCGATTTCAAGTAATTTAATTCACTTTGATAAACTTGATTTTAAAT
GTATTTTATTTGTTGATTTAATATTACCTTATGATTAATATGTTTACGAG
TAATAATTATGAATTAATTTTAATCTTAAGTCAAAACACAACTTGAAACA
AAAGCAGCAATTAAAGAAGAAACAACAACAAAAAAAAAAAAAAAA

RE09049.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
rdx.e 4451 rdx.e 2..3494 3..3495 17435 99.9 Plus
rdx.i 5003 rdx.i 2..3494 3..3495 17435 99.9 Plus
rdx-RE 4456 rdx-RE 7..3499 3..3495 17435 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9806544..9808270 1729..3 8635 100 Minus
chr3R 27901430 chr3R 9793544..9794240 3479..2783 3485 100 Minus
chr3R 27901430 chr3R 9794819..9795116 2460..2163 1490 100 Minus
chr3R 27901430 chr3R 9794518..9794700 2639..2457 915 100 Minus
chr3R 27901430 chr3R 9795188..9795350 2164..2002 815 100 Minus
chr3R 27901430 chr3R 9795860..9796014 1882..1728 775 100 Minus
chr3R 27901430 chr3R 9794307..9794451 2782..2638 725 100 Minus
chr3R 27901430 chr3R 9795415..9795544 2005..1876 650 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:31:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13981634..13983360 1729..3 8635 100 Minus
3R 32079331 3R 13968618..13969330 3495..2783 3535 99.7 Minus
3R 32079331 3R 13969909..13970206 2460..2163 1490 100 Minus
3R 32079331 3R 13969608..13969790 2639..2457 915 100 Minus
3R 32079331 3R 13970278..13970440 2164..2002 815 100 Minus
3R 32079331 3R 13970950..13971104 1882..1728 775 100 Minus
3R 32079331 3R 13969397..13969541 2782..2638 725 100 Minus
3R 32079331 3R 13970505..13970634 2005..1876 650 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13722465..13724191 1729..3 8635 100 Minus
3R 31820162 3R 13709449..13710161 3495..2783 3535 99.7 Minus
3R 31820162 3R 13710740..13711037 2460..2163 1490 100 Minus
3R 31820162 3R 13710439..13710621 2639..2457 915 100 Minus
3R 31820162 3R 13711109..13711271 2164..2002 815 100 Minus
3R 31820162 3R 13711781..13711935 1882..1728 775 100 Minus
3R 31820162 3R 13710228..13710372 2782..2638 725 100 Minus
3R 31820162 3R 13711336..13711465 2005..1876 650 100 Minus
Blast to na_te.dros performed 2019-03-15 14:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2257..2895 567..1211 470 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2999 508..1192 458 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2869 1097..1645 403 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2273..2636 693..1058 364 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6888 1518..1645 358 78.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6692..6909 1423..1645 355 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2315..2542 1410..1645 350 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2494 1468..1645 349 67.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2831 506..964 345 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6951 1381..1623 343 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2254..2829 614..1208 318 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..7197 508..963 316 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2266..2824 1095..1645 308 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2874 1094..1638 304 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2666 810..1189 287 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2451..2667 1374..1592 287 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2981 942..1646 284 55.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2391..2945 1094..1652 283 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2344..3034 902..1620 280 54 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..7020 1374..1654 277 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2630 1332..1646 257 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6410..6824 777..1205 247 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..7094 508..852 237 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..7217 1144..1655 236 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2568..2941 474..850 230 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2497..2972 508..957 225 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..7274 1123..1673 214 53.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6946 508..681 208 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6535..6959 801..1211 195 57.1 Plus
roo 9092 roo DM_ROO 9092bp 1055..1162 631..738 188 67.3 Plus
roo 9092 roo DM_ROO 9092bp 1040..1151 1097..1205 183 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6764..6880 1094..1210 171 60.7 Plus
roo 9092 roo DM_ROO 9092bp 1054..1163 1090..1199 171 64 Plus
TART-A 13424 TART-A 13424bp 11595..11722 644..775 171 64.9 Plus
BS 5142 BS BS 5142bp 1955..2148 1429..1626 170 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6893 1094..1205 169 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6806..6923 1094..1208 169 61.9 Plus
Tabor 7345 Tabor TABOR 7345bp 6606..6814 117..327 167 54.5 Plus
TART-A 13424 TART-A 13424bp 417..544 644..775 162 65.2 Plus
roo 9092 roo DM_ROO 9092bp 1054..1165 1072..1189 161 64.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3228..3350 554..669 157 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6882..7209 508..843 156 56.1 Plus
roo 9092 roo DM_ROO 9092bp 1055..1133 1130..1208 152 65.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3290..3346 1156..1209 152 77.2 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 503..573 1135..1205 148 67.6 Plus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 306..384 3377..3299 142 69.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2259..2673 1114..1559 140 54.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1584 1121..1208 139 66.3 Plus
roo 9092 roo DM_ROO 9092bp 1042..1121 1129..1208 139 68.7 Plus
X-element 4740 X-element ROXELEMENT 4740bp 1712..1829 468..594 135 62.2 Plus
invader1 4032 invader1 INVADER 4032bp 2149..2196 2797..2844 132 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6872 493..557 129 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1530..1587 1142..1199 128 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1526..1587 1129..1190 121 66.1 Plus
TART-A 13424 TART-A 13424bp 8631..8680 664..714 117 72.5 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9027..9189 1316..1474 117 59.6 Plus

RE09049.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:50:33 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9795862..9796012 1730..1880 100 <- Minus
chr3R 9806544..9806646 1627..1729 100 == Minus
chr3R 9795188..9795349 2003..2164 100 <- Minus
chr3R 9795418..9795539 1881..2002 100 <- Minus
chr3R 9793578..9793942 3081..3445 100 == Minus
chr3R 9794096..9794240 2783..2927 100 <- Minus
chr3R 9794307..9794449 2640..2782 100 <- Minus
chr3R 9794518..9794696 2461..2639 100 <- Minus
chr3R 9794819..9795114 2165..2460 100 <- Minus
chr3R 9806756..9807075 1198..1517 90 == Minus
chr3R 9807133..9807319 954..1140 100 == Minus
chr3R 9807372..9807425 848..901 100 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:46:38 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RE 1..2490 438..2927 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:26:01 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RE 1..2490 438..2927 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:43:30 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RE 1..2490 438..2927 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:10:10 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RE 1..2490 438..2927 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:09:45 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RE 1..2490 438..2927 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:46:34 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RE 2..3478 3..3479 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:26:01 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RE 2..3478 3..3479 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:43:30 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RE 3..3480 1..3479 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:10:10 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RE 2..3478 3..3479 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:09:45 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RE 3..3480 1..3479 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:50:33 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13968634..13969330 2783..3479 100 <- Minus
3R 13969397..13969539 2640..2782 100 <- Minus
3R 13969608..13969786 2461..2639 100 <- Minus
3R 13969909..13970204 2165..2460 100 <- Minus
3R 13970278..13970439 2003..2164 100 <- Minus
3R 13970508..13970629 1881..2002 100 <- Minus
3R 13970952..13971102 1730..1880 100 <- Minus
3R 13981634..13983361 1..1729 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:50:33 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13968634..13969330 2783..3479 100 <- Minus
3R 13969397..13969539 2640..2782 100 <- Minus
3R 13969608..13969786 2461..2639 100 <- Minus
3R 13969909..13970204 2165..2460 100 <- Minus
3R 13970278..13970439 2003..2164 100 <- Minus
3R 13970508..13970629 1881..2002 100 <- Minus
3R 13970952..13971102 1730..1880 100 <- Minus
3R 13981634..13983361 1..1729 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:50:33 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13968634..13969330 2783..3479 100 <- Minus
3R 13969397..13969539 2640..2782 100 <- Minus
3R 13969608..13969786 2461..2639 100 <- Minus
3R 13969909..13970204 2165..2460 100 <- Minus
3R 13970278..13970439 2003..2164 100 <- Minus
3R 13970508..13970629 1881..2002 100 <- Minus
3R 13970952..13971102 1730..1880 100 <- Minus
3R 13981634..13983361 1..1729 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:43:30 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9794356..9795052 2783..3479 100 <- Minus
arm_3R 9795119..9795261 2640..2782 100 <- Minus
arm_3R 9795330..9795508 2461..2639 100 <- Minus
arm_3R 9795631..9795926 2165..2460 100 <- Minus
arm_3R 9796000..9796161 2003..2164 100 <- Minus
arm_3R 9796230..9796351 1881..2002 100 <- Minus
arm_3R 9796674..9796824 1730..1880 100 <- Minus
arm_3R 9807356..9809083 1..1729 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:46:34 Download gff for RE09049.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13709465..13710161 2783..3479 100 <- Minus
3R 13710228..13710370 2640..2782 100 <- Minus
3R 13710439..13710617 2461..2639 100 <- Minus
3R 13710740..13711035 2165..2460 100 <- Minus
3R 13711109..13711270 2003..2164 100 <- Minus
3R 13711339..13711460 1881..2002 100 <- Minus
3R 13711783..13711933 1730..1880 100 <- Minus
3R 13722465..13724192 1..1729 99   Minus

RE09049.pep Sequence

Translation from 437 to 2926

> RE09049.pep
MFEPYVKIKKKRSVNEIYENENLEQQQHHLQQQQQQPATSDNCCCENGEP
QNAPEVATATVAATSVAATSAAATVATGAAASSSSSGNCSRLQQLISTPP
VLLRRSSLQQQQHQQQQHHPHTPAATATPPQQQQQQQAAPSVLQQHLGHL
NYESGATAAAAATAAAAAATVATSRSGSATLAQHLATPSNILQAAFGSSN
LQHILTRSAPSPSSSAISSNNCSSACAGNTHYNGGNSNSGSSSSNSNHHS
NSIIASRLFGAASSSSSSSSSSASASSSSVAASSSSSSHHLHSHHSALTN
SITNRINQSIRRHLNQQQHHHPLSASSSSASASPSASTSSSSSYQQSSVQ
QQHYNCAHPAQQQQHHHHHHSSSSSSSSSSSSSHHHHNSSSSSNSNNQQQ
PQQSPLCLVLLVKCPNSKEFCNAAANFCDKRLPVNECQASQTARVTSNLH
ASSSTMAVSRVPSPPLPEVNTPVAENWCYTQVKVVKFSYMWTINNFSFCR
EEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNK
SEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDE
ANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFD
NEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITD
VDHEVLKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCV
NLSVETAAETLILADLHSADQLKAQTIDFINTHATDVMETSGWQNMITTH
SHLIAEAFRALATQQIPPIGPPRKRVKMS*

RE09049.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18796-PA 822 GF18796-PA 1..822 1..829 3038 81.8 Plus
Dana\GF15622-PA 635 GF15622-PA 76..218 640..780 189 33.6 Plus
Dana\GF24095-PA 668 GF24095-PA 96..250 635..790 183 34 Plus
Dana\GF20424-PA 744 GF20424-PA 47..198 640..789 166 27.5 Plus
Dana\GF13750-PA 707 GF13750-PA 67..193 650..776 162 30.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21588-PA 406 GG21588-PA 8..406 431..829 2206 100 Plus
Dere\GG21577-PA 428 GG21577-PA 1..428 1..431 748 78.5 Plus
Dere\GG10220-PA 630 GG10220-PA 71..213 640..780 183 32.9 Plus
Dere\GG15931-PA 623 GG15931-PA 53..207 635..790 180 33.3 Plus
Dere\GG20941-PA 715 GG20941-PA 67..193 650..776 163 30.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18432-PA 878 GH18432-PA 454..878 405..829 2278 99.8 Plus
Dgri\GH10638-PA 625 GH10638-PA 66..208 640..780 182 31.5 Plus
Dgri\GH17090-PA 624 GH17090-PA 54..208 635..790 179 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-PE 829 CG12537-PE 1..829 1..829 4236 100 Plus
rdx-PF 406 CG12537-PF 6..406 429..829 2048 99.5 Plus
rdx-PA 406 CG12537-PA 6..406 429..829 2048 99.5 Plus
rdx-PC 403 CG12537-PC 5..403 431..829 2047 100 Plus
rdx-PB 374 CG12537-PB 1..374 456..829 1923 100 Plus
dikar-PD 3222 CG42799-PD 507..863 81..411 257 25.5 Plus
dikar-PF 3261 CG42799-PF 507..863 81..411 257 25.5 Plus
SoxN-PB 761 CG18024-PB 469..753 69..381 225 27.6 Plus
sbb-PF 939 CG5580-PF 13..320 118..398 220 29.3 Plus
sbb-PG 2312 CG5580-PG 13..320 118..398 220 29.3 Plus
sbb-PJ 2330 CG5580-PJ 13..320 118..398 220 29.3 Plus
sbb-PE 929 CG5580-PE 27..310 147..398 219 30.3 Plus
sbb-PC 929 CG5580-PC 27..310 147..398 219 30.3 Plus
sbb-PH 2302 CG5580-PH 27..310 147..398 219 30.3 Plus
sbb-PD 2302 CG5580-PD 27..310 147..398 219 30.3 Plus
srp-PB 1249 CG3992-PB 154..480 53..406 215 25.6 Plus
srp-PA 1264 CG3992-PA 154..480 53..406 215 25.6 Plus
Smr-PF 3601 CG4013-PF 235..624 19..413 214 23.8 Plus
Smr-PE 3601 CG4013-PE 235..624 19..413 214 23.8 Plus
Smr-PD 3601 CG4013-PD 235..624 19..413 214 23.8 Plus
Smr-PG 3607 CG4013-PG 241..630 19..413 214 23.8 Plus
Alh-PF 1165 CG1070-PF 510..887 25..465 213 23.7 Plus
Alh-PP 1717 CG1070-PP 1062..1439 25..465 213 23.7 Plus
Hr4-PI 2123 CG43934-PI 1675..2051 13..397 211 25.2 Plus
bun-PA 1206 CG42281-PK 1..327 75..403 209 27.7 Plus
CG32767-PG 1280 CG32767-PG 772..1135 20..416 209 24.4 Plus
CG32767-PH 1281 CG32767-PH 772..1136 20..416 209 25.2 Plus
CG32767-PF 1281 CG32767-PF 772..1136 20..416 209 25.2 Plus
CG32767-PE 1281 CG32767-PE 772..1136 20..416 209 25.2 Plus
CG32767-PD 1281 CG32767-PD 772..1136 20..416 209 25.2 Plus
CG32767-PC 1281 CG32767-PC 772..1136 20..416 209 25.2 Plus
Mur89F-PC 2158 CG4090-PC 272..477 173..390 209 29.8 Plus
Mur89F-PB 2159 CG4090-PB 272..477 173..390 209 29.8 Plus
Alh-PP 1717 CG1070-PP 290..550 154..397 208 26.8 Plus
ovo-PA 975 CG6824-PA 392..811 19..396 208 25.1 Plus
ovo-PD 1028 CG6824-PD 445..864 19..396 208 25.1 Plus
Alh-PD 1323 CG1070-PD 237..497 154..397 208 26.8 Plus
Alh-PL 1332 CG1070-PL 237..497 154..397 208 26.8 Plus
Alh-PA 1376 CG1070-PA 290..550 154..397 208 26.8 Plus
Alh-PK 1385 CG1070-PK 290..550 154..397 208 26.8 Plus
Mur89F-PC 2158 CG4090-PC 546..738 213..405 206 30.8 Plus
Mur89F-PB 2159 CG4090-PB 546..738 213..405 206 30.8 Plus
Mur89F-PC 2158 CG4090-PC 806..1028 205..420 204 29.1 Plus
Mur89F-PB 2159 CG4090-PB 806..1028 205..420 204 29.1 Plus
ovo-PC 1222 CG6824-PC 722..1058 24..396 201 24.5 Plus
ovo-PE 1351 CG6824-PE 851..1187 24..396 201 24.5 Plus
ovo-PB 1351 CG6824-PB 851..1187 24..396 201 24.5 Plus
Mur89F-PC 2158 CG4090-PC 811..1015 197..401 200 31.2 Plus
Mur89F-PB 2159 CG4090-PB 811..1015 197..401 200 31.2 Plus
Mur89F-PC 2158 CG4090-PC 279..472 199..404 197 32.5 Plus
Mur89F-PB 2159 CG4090-PB 279..472 199..404 197 32.5 Plus
Mur89F-PC 2158 CG4090-PC 257..439 207..399 196 30.6 Plus
Mur89F-PB 2159 CG4090-PB 257..439 207..399 196 30.6 Plus
CG9426-PA 627 CG9426-PA 68..213 640..783 196 32.2 Plus
sbb-PF 939 CG5580-PF 221..569 52..397 192 22.6 Plus
sbb-PE 929 CG5580-PE 211..559 52..397 192 22.6 Plus
sbb-PC 929 CG5580-PC 211..559 52..397 192 22.6 Plus
sbb-PG 2312 CG5580-PG 221..569 52..397 192 22.6 Plus
sbb-PJ 2330 CG5580-PJ 221..569 52..397 192 22.6 Plus
sbb-PH 2302 CG5580-PH 211..559 52..397 192 22.6 Plus
sbb-PD 2302 CG5580-PD 211..559 52..397 192 22.6 Plus
wrd-PA 951 CG7913-PA 18..339 24..343 192 27.6 Plus
wrd-PB 984 CG7913-PB 18..339 24..343 192 27.6 Plus
Muc68D-PB 1514 CG6004-PB 316..761 2..470 192 21.2 Plus
Mur89F-PC 2158 CG4090-PC 256..626 44..404 191 21.6 Plus
Mur89F-PB 2159 CG4090-PB 256..626 44..404 191 21.6 Plus
CG43736-PL 1367 CG43736-PL 387..708 65..397 190 24.3 Plus
CG43736-PI 1367 CG43736-PI 387..708 65..397 190 24.3 Plus
Smr-PF 3601 CG4013-PF 18..231 206..403 188 25.9 Plus
Smr-PE 3601 CG4013-PE 18..231 206..403 188 25.9 Plus
Smr-PD 3601 CG4013-PD 18..231 206..403 188 25.9 Plus
Muc68D-PB 1514 CG6004-PB 576..969 21..404 188 21.2 Plus
CG30389-PE 1037 CG30389-PE 181..492 131..419 188 26.7 Plus
Mur89F-PC 2158 CG4090-PC 805..996 216..404 187 29.7 Plus
Mur89F-PB 2159 CG4090-PB 805..996 216..404 187 29.7 Plus
skd-PE 2768 CG9936-PE 415..722 52..405 185 25 Plus
Crtc-PC 797 CG6064-PC 364..737 24..383 183 21.4 Plus
CG30389-PE 1037 CG30389-PE 178..540 28..392 180 20.5 Plus
wrd-PA 951 CG7913-PA 6..375 101..476 176 24.9 Plus
wrd-PB 984 CG7913-PB 6..375 101..476 176 24.9 Plus
Smr-PG 3607 CG4013-PG 18..238 206..403 174 25.8 Plus
Mur89F-PC 2158 CG4090-PC 548..748 174..404 172 30 Plus
Mur89F-PB 2159 CG4090-PB 548..748 174..404 172 30 Plus
Muc68D-PB 1514 CG6004-PB 407..777 21..404 171 20.9 Plus
Alh-PF 1165 CG1070-PF 109..624 24..476 170 22.2 Plus
CG32767-PG 1280 CG32767-PG 81..473 18..406 168 21.1 Plus
CG32767-PH 1281 CG32767-PH 81..473 18..406 168 21.1 Plus
CG32767-PF 1281 CG32767-PF 81..473 18..406 168 21.1 Plus
CG32767-PE 1281 CG32767-PE 81..473 18..406 168 21.1 Plus
CG32767-PD 1281 CG32767-PD 81..473 18..406 168 21.1 Plus
CG32767-PC 1281 CG32767-PC 81..473 18..406 168 21.1 Plus
Mur89F-PC 2158 CG4090-PC 253..415 233..398 168 32.1 Plus
Mur89F-PB 2159 CG4090-PB 253..415 233..398 168 32.1 Plus
CG32767-PG 1280 CG32767-PG 689..939 141..396 167 26.6 Plus
CG32767-PH 1281 CG32767-PH 689..939 141..396 167 26.6 Plus
CG32767-PF 1281 CG32767-PF 689..939 141..396 167 26.6 Plus
CG32767-PE 1281 CG32767-PE 689..939 141..396 167 26.6 Plus
CG32767-PD 1281 CG32767-PD 689..939 141..396 167 26.6 Plus
CG32767-PC 1281 CG32767-PC 689..939 141..396 167 26.6 Plus
Smr-PG 3607 CG4013-PG 1..237 192..403 166 25.3 Plus
Mur89F-PC 2158 CG4090-PC 869..1132 151..404 164 26.1 Plus
Mur89F-PB 2159 CG4090-PB 869..1132 151..404 164 26.1 Plus
Alh-PP 1717 CG1070-PP 799..1176 63..476 163 22 Plus
Muc68D-PB 1514 CG6004-PB 509..948 21..455 161 22 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10787-PA 902 GI10787-PA 1..902 1..829 2540 70.7 Plus
Dmoj\GI17317-PA 204 GI17317-PA 5..176 635..808 425 49.4 Plus
Dmoj\GI11445-PA 186 GI11445-PA 11..172 635..797 333 46.7 Plus
Dmoj\GI10727-PA 623 GI10727-PA 64..206 640..780 190 33.6 Plus
Dmoj\GI11691-PA 617 GI11691-PA 54..208 635..790 178 33.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23319-PA 406 GL23319-PA 8..406 431..829 2206 100 Plus
Dper\GL23317-PA 464 GL23317-PA 1..381 1..359 471 50.1 Plus
Dper\GL26698-PA 628 GL26698-PA 69..211 640..780 183 32.9 Plus
Dper\GL25213-PA 628 GL25213-PA 55..209 635..790 179 33.3 Plus
Dper\GL14985-PA 763 GL14985-PA 35..186 640..789 161 28.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22127-PA 906 GA22127-PA 288..906 228..829 2376 83.7 Plus
Dpse\GA22127-PC 406 GA22127-PC 8..406 431..829 2206 100 Plus
Dpse\GA22127-PB 374 GA22127-PB 1..374 456..829 2079 100 Plus
Dpse\GA21778-PA 628 GA21778-PA 69..211 640..780 183 32.9 Plus
Dpse\GA19454-PA 628 GA19454-PA 57..209 637..790 178 33.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25894-PA 406 GM25894-PA 8..406 431..829 2206 100 Plus
Dsec\GM25893-PA 426 GM25893-PA 1..426 1..431 681 78.4 Plus
Dsec\GM25768-PA 626 GM25768-PA 67..209 640..780 182 32.9 Plus
Dsec\GM25560-PA 623 GM25560-PA 53..207 635..790 180 33.3 Plus
Dsec\GM19869-PA 715 GM19869-PA 67..193 650..776 164 30.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20464-PA 406 GD20464-PA 8..406 431..829 2206 100 Plus
Dsim\GD20463-PA 378 GD20463-PA 91..378 141..431 493 79 Plus
Dsim\GD14575-PA 623 GD14575-PA 53..207 635..790 180 33.3 Plus
Dsim\GD20463-PA 378 GD20463-PA 1..50 1..48 178 84 Plus
Dsim\GD16986-PA 717 GD16986-PA 31..181 640..788 158 27.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14385-PA 836 GJ14385-PA 1..836 1..829 2697 73.4 Plus
Dvir\GJ12074-PA 287 GJ12074-PA 1..286 503..808 647 45.2 Plus
Dvir\GJ18276-PA 625 GJ18276-PA 66..208 640..780 190 33.6 Plus
Dvir\GJ11367-PA 624 GJ11367-PA 54..208 635..790 177 33.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22480-PA 877 GK22480-PA 289..877 255..829 2441 88.8 Plus
Dwil\GK15571-PA 641 GK15571-PA 80..224 640..780 188 33.1 Plus
Dwil\GK22423-PA 548 GK22423-PA 9..160 640..789 177 28.8 Plus
Dwil\GK15757-PA 679 GK15757-PA 84..236 637..790 177 33.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10070-PA 406 GE10070-PA 8..406 431..829 2206 100 Plus
Dyak\GE10069-PA 445 GE10069-PA 1..445 1..431 760 77.4 Plus
Dyak\GE11820-PA 630 GE11820-PA 71..213 640..780 183 32.9 Plus
Dyak\GE22281-PA 623 GE22281-PA 53..207 635..790 180 33.3 Plus
Dyak\GE13880-PA 721 GE13880-PA 68..193 651..776 162 31 Plus

RE09049.hyp Sequence

Translation from 437 to 2926

> RE09049.hyp
MFEPYVKIKKKRSVNEIYENENLEQQQHHLQQQQQQPATSDNCCCENGEP
QNAPEVATATVAATSVAATSAAATVATGAAASSSSSGNCSRLQQLISTPP
VLLRRSSLQQQQHQQQQHHPHTPAATATPPQQQQQQQAAPSVLQQHLGHL
NYESGATAAAAATAAAAAATVATSRSGSATLAQHLATPSNILQAAFGSSN
LQHILTRSAPSPSSSAISSNNCSSACAGNTHYNGGNSNSGSSSSNSNHHS
NSIIASRLFGAASSSSSSSSSSASASSSSVAASSSSSSHHLHSHHSALTN
SITNRINQSIRRHLNQQQHHHPLSASSSSASASPSASTSSSSSYQQSSVQ
QQHYNCAHPAQQQQHHHHHHSSSSSSSSSSSSSHHHHNSSSSSNSNNQQQ
PQQSPLCLVLLVKCPNSKEFCNAAANFCDKRLPVNECQASQTARVTSNLH
ASSSTMAVSRVPSPPLPEVNTPVAENWCYTQVKVVKFSYMWTINNFSFCR
EEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNK
SEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDE
ANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFD
NEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITD
VDHEVLKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCV
NLSVETAAETLILADLHSADQLKAQTIDFINTHATDVMETSGWQNMITTH
SHLIAEAFRALATQQIPPIGPPRKRVKMS*

RE09049.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-PE 829 CG12537-PE 1..829 1..829 4236 100 Plus
rdx-PF 406 CG12537-PF 6..406 429..829 2048 99.5 Plus
rdx-PA 406 CG12537-PA 6..406 429..829 2048 99.5 Plus
rdx-PC 403 CG12537-PC 5..403 431..829 2047 100 Plus
rdx-PB 374 CG12537-PB 1..374 456..829 1923 100 Plus