Clone RE09151 Report

Search the DGRC for RE09151

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:91
Well:51
Vector:pFlc-1
Associated Gene/TranscriptCG12106-RA
Protein status:RE09151.pep: gold
Sequenced Size:1344

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12106 2003-01-01 Sim4 clustering to Release 3
CG12106 2008-04-29 Release 5.5 accounting
CG12106 2008-08-15 Release 5.9 accounting
CG12106 2008-12-18 5.12 accounting

Clone Sequence Records

RE09151.complete Sequence

1344 bp (1344 high quality bases) assembled on 2004-12-02

GenBank Submission: BT021322

> RE09151.complete
TGGCTGTTAGGCGCATATCTTGTTTACAAGCGGTTTAATTTTATAAATAT
AGCTTTGTTTTAATAAATATCCAAGAAATTTAAACTATTACACATGGACA
CATTGCCGGGAAGTTCCTCCGCCCTGAGCACAGACGACGAGCAAACTGCC
CTGATTTCCCCCACTGTGGTGGCCGGCTTAAAGAACCTGGGTGCCATCAT
TTCGCTGCCACTCACCAAACTGCTCATTGCCAATTCCTTGAAACTGACGC
TCCATCCAGATGCCACCATTGCTCCGGTGCCCGAGCTGTATGCCAAGAAC
GCCGCCTGCGCCAAACAGAGCGAGTACGCGGTGGTCACCCTCTTCGCCCT
GGGCACCAAGCACGGCTGGGATGGCCTTCAATTGCGCCAGCAGCTGGAGC
AACTCAACCTCGATGCAGCTGCCGTCGACGAGCTGAGTCGCGTTTACGAG
GACAGCCGCAAGGATCTAATTCTCCGCCAACTGCAAATAGGCCATAGCTT
TCCGCACATTACCGACATCCAGTGGCGCATCGTGTGCGACGTGAAGTCTT
CCACCTCGGACTGCAGCACGGGCGCGGCCTGCTTCCACATCAATCTGGGC
AACTTTCGGCAGAGCAGCGGCGAGCGGGTGACCATCGTTGAGTTTGTCTG
CAATGCCGAGGAGCTGCAGTCGCTAATCAATCGTCTCAAGGAGATCGAGC
GGCACTGCCAACAGATGGCCGTGGTCTAGGGAAACAAGCTCTTCAAATTC
TTATCGATTATATTTCGCAGCATATAACACCAGCATTGTCGGCTATATAC
AGTGTCGGAACAGGAAACCTAAACAGTTAACACAGTCATCATCGCTTAAA
AGGCTACGGCTTCATCATTTGGAGTCCAACTCCAATGGCAACCACTTCGT
TGATCATCCGCGTCAATGGGCAACCTTGTGCGGCGGCGGCACAAGCAGCT
TCATCAGCTGCCCATAGTGATTCGGCGCTGTGCTATAGATGGTGCCCGAG
AAGCGGGTGCTGTCGTTCTTCTCGGCGGAAATCACTGTGCAACGGTTCTG
TTCCGAAAGCCGCATGTTTAGACCACGGAAGCGTGAGTCCAGCCTGTATA
GATTAGCCCCTTCCCGTGGTAGAAAGAATGGACGTCCGCTAAACGGATTC
ATGAAGTCCGCCCAGTAGCCGTACGATAGCAGGCGATCGCACATCTCCCG
CGCTGCCAGGACAAACTGCAAAGGTAGTTGGCATTAGTTATGTATGTAGA
TATACTCGTTTAGATAATAGGTAAATACCAACAAACTAACTTCTCTGTAT
TCTCATTCATCAACCCAAATCTAAAACCAAAAAAAAAAAAAAAA

RE09151.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12106-RA 1356 CG12106-RA 11..1335 3..1327 6625 100 Plus
CG12118-RB 1315 CG12118-RB 834..1315 1217..736 2410 100 Minus
CG12118-RA 1332 CG12118-RA 851..1332 1217..736 2410 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9086083..9087144 266..1327 5280 99.8 Plus
chrX 22417052 chrX 9085750..9086012 3..265 1315 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:31:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9194272..9195333 266..1327 5310 100 Plus
X 23542271 X 9193945..9194207 3..265 1315 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9202370..9203431 266..1327 5310 100 Plus
X 23527363 X 9202043..9202305 3..265 1315 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:48:55 has no hits.

RE09151.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:49:32 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9085747..9086012 1..265 99 -> Plus
chrX 9086083..9087144 266..1328 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:52:07 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
CG12106-RA 1..636 94..729 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:23:50 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
CG12106-RA 1..636 94..729 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:51:03 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
CG12106-RA 1..636 94..729 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:07:42 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
CG12106-RA 1..636 94..729 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:14 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
CG12106-RA 1..636 94..729 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:25:40 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
CG12106-RA 1..1328 1..1328 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:23:49 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
CG12106-RA 1..1328 1..1328 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:03 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
CG12106-RA 45..1372 1..1327 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:07:42 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
CG12106-RA 1..1328 1..1328 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:14 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
CG12106-RA 45..1372 1..1327 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:32 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
X 9193942..9194207 1..265 99 -> Plus
X 9194272..9195333 266..1328 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:32 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
X 9193942..9194207 1..265 99 -> Plus
X 9194272..9195333 266..1328 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:32 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
X 9193942..9194207 1..265 99 -> Plus
X 9194272..9195333 266..1328 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:03 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9087975..9088240 1..265 99 -> Plus
arm_X 9088305..9089366 266..1328 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:44:14 Download gff for RE09151.complete
Subject Subject Range Query Range Percent Splice Strand
X 9202040..9202305 1..265 99 -> Plus
X 9202370..9203431 266..1328 99   Plus

RE09151.pep Sequence

Translation from 93 to 728

> RE09151.pep
MDTLPGSSSALSTDDEQTALISPTVVAGLKNLGAIISLPLTKLLIANSLK
LTLHPDATIAPVPELYAKNAACAKQSEYAVVTLFALGTKHGWDGLQLRQQ
LEQLNLDAAAVDELSRVYEDSRKDLILRQLQIGHSFPHITDIQWRIVCDV
KSSTSDCSTGAACFHINLGNFRQSSGERVTIVEFVCNAEELQSLINRLKE
IERHCQQMAVV*

RE09151.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22318-PA 211 GF22318-PA 16..210 16..210 858 80.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18297-PA 211 GG18297-PA 1..210 1..210 970 93.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17756-PA 212 GH17756-PA 9..210 8..209 789 69.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12106-PA 211 CG12106-PA 1..211 1..211 1070 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15090-PA 212 GI15090-PA 8..211 7..210 812 72.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20205-PA 211 GL20205-PA 1..210 1..210 843 74.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11399-PA 211 GA11399-PA 1..210 1..210 838 74.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13729-PA 211 GM13729-PA 1..211 1..211 1092 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16937-PA 211 GD16937-PA 1..211 1..211 1096 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18898-PA 213 GJ18898-PA 8..212 5..210 790 72.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25799-PA 204 GK25799-PA 8..203 13..210 823 75.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15831-PA 211 GE15831-PA 1..211 1..211 1041 92.9 Plus

RE09151.hyp Sequence

Translation from 93 to 728

> RE09151.hyp
MDTLPGSSSALSTDDEQTALISPTVVAGLKNLGAIISLPLTKLLIANSLK
LTLHPDATIAPVPELYAKNAACAKQSEYAVVTLFALGTKHGWDGLQLRQQ
LEQLNLDAAAVDELSRVYEDSRKDLILRQLQIGHSFPHITDIQWRIVCDV
KSSTSDCSTGAACFHINLGNFRQSSGERVTIVEFVCNAEELQSLINRLKE
IERHCQQMAVV*

RE09151.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12106-PA 211 CG12106-PA 1..211 1..211 1070 100 Plus