Clone RE09163 Report

Search the DGRC for RE09163

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:91
Well:63
Vector:pFlc-1
Associated Gene/TranscriptDysb-RA
Protein status:RE09163.pep: gold
Preliminary Size:933
Sequenced Size:1405

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6856 2001-12-14 Blastp of sequenced clone
CG6856 2002-01-01 Sim4 clustering to Release 2
CG6856 2003-01-01 Sim4 clustering to Release 3
CG6856 2008-04-29 Release 5.5 accounting
CG6856 2008-08-15 Release 5.9 accounting
CG6856 2008-12-18 5.12 accounting

Clone Sequence Records

RE09163.complete Sequence

1405 bp (1405 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071009

> RE09163.complete
AACAGCTGATTCTTTATTTACCACTCAATTTTCGATGGAAAACGCCAGCG
CGAAGACAATTAGAAATCGCTAAGTTAAATAAATAGAGATCCGTTGTCGC
AAGATGTTCGGGAACCTGAAAAAGAAGCTTAGCAGTGCGATCCAGGAGGG
CCTGGTGATCTCGGAGAATCTGCAACAGCAATATCGCCAGCGTGTCAGTT
CCGGAAACTCGGGGAGTAGCCAAGCCAGTGGGATTACGACCCCCATTTCG
CCACTGGGCCTTAACGAAAGTCTGTCGTCCAGCAGGAGCAGTAGCCTCTC
CCTTAGTGCTCCCTTCCAGCTAACCGATGGAGTGCCCAGTCACCTAAATG
TGGCAGCTGGTTGCAGTTTGCTTGCCAAATACGAGGATGATTGGCAGCAG
ATTCATGGCGCCAACGAAAAGAACGCGGAGAAGGCTGCGCAGATTGCTAA
CCAAATCTCCGGCATCCAAGACCAGGCCAGCCATCAGCACAGGATCATGA
GTGAGCTGAACAGTAGTCTGGCGGGAATTCCCACGTTGATAGCCCAACTG
CAAAACAGCTCACAGGTTCTTAATTCCCTGGAGGAAATGGGTAAGCAGTT
GGAGATTGAGCTCGAGAAGCTGGAGGATCTGCGCGAGGAGTGTGAGCTCC
AAGAGTTCATCCTTGAGCAGCAGTTTCAGCTCTCCCGGCACAAGCAAAAG
AAACTGAACGAACTGGAGCAGTATCGCCAGCAAATAGCCCAGAAACACCA
ATCCAAAATCAAGGATCAGGAGCAGACCCTCCTGAAGCTGCAGAGGGAAC
GACAGGCTGTCTTCGACGACGCCTTCCGGGAGGATATGGAGGAGTACAAA
CAGCGCGGCCAGCTGACAAAAATTCAAACCACCAGCAACAAGTTGGCTCT
GGAGGAAGTCGTCCTTGAAGCCAACGAAGTGGAGACAAAGGATGCTCTGG
AACAATTTCTAAATGGCTAACTCACATTGTTTGCTCATCTCGCAAAAGAC
TACAATTTGTGCCTTTAAGTGCAATAAGCAGTGTAATTGTTAAAATATTT
TAACGGGGACTTCTGAAAAATAACTTAATTTTTTCACAACATTTTCTTAC
TGCATTTGAACGTTAAACTATTACATTAAAGGGAATTGGACATACAAAGA
TTAATTATCAATGCCAAATTATTTTAACATACAAGGCATTTTAACATAAT
TTGTTAAAGTAATTTCAAAATTGCTTTACTATCTCGGACAAAATATAGGC
AAATTTAATATAAGTTTCAAATAATGAAGTCAAAGTAAAAGTGAATTTTC
AGGAATCCCCCTAGTGTATATGAAATTTGTTGATGTGGCACCGTCACTGC
ATGTTTTGACAGCGCTGAATAAACATTGTTTTTATAAAAAAAAAAAAAAA
AAAAA

RE09163.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6856-RA 1498 CG6856-RA 112..1498 1..1387 6935 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18857385..18858253 1..869 4300 99.7 Plus
chr3L 24539361 chr3L 18858311..18858826 870..1385 2460 98.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:31:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18867777..18868645 1..869 4345 100 Plus
3L 28110227 3L 18868704..18869221 870..1387 2590 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18860877..18861745 1..869 4345 100 Plus
3L 28103327 3L 18861804..18862321 870..1387 2590 100 Plus
Blast to na_te.dros performed 2019-03-16 07:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2868 690..800 132 60.2 Plus

RE09163.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:50:57 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18857385..18858253 1..869 99 -> Plus
chr3L 18858311..18858826 870..1385 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:52:10 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
CG6856-RA 1..867 104..970 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:06:12 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
dysb-RA 1..867 104..970 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:51:09 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
dysb-RA 1..867 104..970 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:30:46 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
CG6856-RA 1..867 104..970 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:20 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
Dysb-RA 1..867 104..970 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:34:30 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
CG6856-RA 1..1385 1..1385 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:06:12 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
dysb-RA 1..1385 1..1385 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:09 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
dysb-RA 7..1391 1..1385 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:30:46 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
CG6856-RA 1..1385 1..1385 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:20 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
Dysb-RA 7..1391 1..1385 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:50:57 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18867777..18868645 1..869 100 -> Plus
3L 18868704..18869219 870..1385 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:50:57 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18867777..18868645 1..869 100 -> Plus
3L 18868704..18869219 870..1385 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:50:57 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18867777..18868645 1..869 100 -> Plus
3L 18868704..18869219 870..1385 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:09 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18860877..18861745 1..869 100 -> Plus
arm_3L 18861804..18862319 870..1385 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:07:07 Download gff for RE09163.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18860877..18861745 1..869 100 -> Plus
3L 18861804..18862319 870..1385 100   Plus

RE09163.hyp Sequence

Translation from 103 to 969

> RE09163.hyp
MFGNLKKKLSSAIQEGLVISENLQQQYRQRVSSGNSGSSQASGITTPISP
LGLNESLSSSRSSSLSLSAPFQLTDGVPSHLNVAAGCSLLAKYEDDWQQI
HGANEKNAEKAAQIANQISGIQDQASHQHRIMSELNSSLAGIPTLIAQLQ
NSSQVLNSLEEMGKQLEIELEKLEDLREECELQEFILEQQFQLSRHKQKK
LNELEQYRQQIAQKHQSKIKDQEQTLLKLQRERQAVFDDAFREDMEEYKQ
RGQLTKIQTTSNKLALEEVVLEANEVETKDALEQFLNG*

RE09163.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dysb-PB 288 CG6856-PB 1..288 1..288 1422 100 Plus
Dysb-PA 288 CG6856-PA 1..288 1..288 1422 100 Plus

RE09163.pep Sequence

Translation from 103 to 969

> RE09163.pep
MFGNLKKKLSSAIQEGLVISENLQQQYRQRVSSGNSGSSQASGITTPISP
LGLNESLSSSRSSSLSLSAPFQLTDGVPSHLNVAAGCSLLAKYEDDWQQI
HGANEKNAEKAAQIANQISGIQDQASHQHRIMSELNSSLAGIPTLIAQLQ
NSSQVLNSLEEMGKQLEIELEKLEDLREECELQEFILEQQFQLSRHKQKK
LNELEQYRQQIAQKHQSKIKDQEQTLLKLQRERQAVFDDAFREDMEEYKQ
RGQLTKIQTTSNKLALEEVVLEANEVETKDALEQFLNG*

RE09163.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23643-PA 289 GF23643-PA 1..289 1..288 1095 81 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16007-PA 288 GG16007-PA 1..288 1..288 1321 93.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14378-PA 295 GH14378-PA 1..295 1..288 821 66.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dysb-PB 288 CG6856-PB 1..288 1..288 1422 100 Plus
Dysb-PA 288 CG6856-PA 1..288 1..288 1422 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11321-PA 284 GI11321-PA 1..283 1..287 802 57.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21438-PA 275 GL21438-PA 1..205 1..206 733 75.7 Plus
Dper\GL24884-PA 96 GL24884-PA 56..96 248..288 157 80.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19908-PA 290 GA19908-PA 1..290 1..288 1072 77.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14997-PA 288 GM14997-PA 1..288 1..288 1351 95.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14774-PA 210 GD14774-PA 1..203 1..203 913 94.1 Plus
Dsim\GD14775-PA 62 GD14775-PA 1..62 227..288 309 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11577-PA 284 GJ11577-PA 1..284 1..288 921 70.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20446-PA 296 GK20446-PA 1..296 1..288 837 67.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23085-PA 288 GE23085-PA 1..288 1..288 1321 93.8 Plus
Dyak\GE19569-PA 288 GE19569-PA 1..288 1..288 1321 93.8 Plus