BDGP Sequence Production Resources |
Search the DGRC for RE09163
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 91 |
Well: | 63 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Dysb-RA |
Protein status: | RE09163.pep: gold |
Preliminary Size: | 933 |
Sequenced Size: | 1405 |
Gene | Date | Evidence |
---|---|---|
CG6856 | 2001-12-14 | Blastp of sequenced clone |
CG6856 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6856 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6856 | 2008-04-29 | Release 5.5 accounting |
CG6856 | 2008-08-15 | Release 5.9 accounting |
CG6856 | 2008-12-18 | 5.12 accounting |
1405 bp (1405 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071009
> RE09163.complete AACAGCTGATTCTTTATTTACCACTCAATTTTCGATGGAAAACGCCAGCG CGAAGACAATTAGAAATCGCTAAGTTAAATAAATAGAGATCCGTTGTCGC AAGATGTTCGGGAACCTGAAAAAGAAGCTTAGCAGTGCGATCCAGGAGGG CCTGGTGATCTCGGAGAATCTGCAACAGCAATATCGCCAGCGTGTCAGTT CCGGAAACTCGGGGAGTAGCCAAGCCAGTGGGATTACGACCCCCATTTCG CCACTGGGCCTTAACGAAAGTCTGTCGTCCAGCAGGAGCAGTAGCCTCTC CCTTAGTGCTCCCTTCCAGCTAACCGATGGAGTGCCCAGTCACCTAAATG TGGCAGCTGGTTGCAGTTTGCTTGCCAAATACGAGGATGATTGGCAGCAG ATTCATGGCGCCAACGAAAAGAACGCGGAGAAGGCTGCGCAGATTGCTAA CCAAATCTCCGGCATCCAAGACCAGGCCAGCCATCAGCACAGGATCATGA GTGAGCTGAACAGTAGTCTGGCGGGAATTCCCACGTTGATAGCCCAACTG CAAAACAGCTCACAGGTTCTTAATTCCCTGGAGGAAATGGGTAAGCAGTT GGAGATTGAGCTCGAGAAGCTGGAGGATCTGCGCGAGGAGTGTGAGCTCC AAGAGTTCATCCTTGAGCAGCAGTTTCAGCTCTCCCGGCACAAGCAAAAG AAACTGAACGAACTGGAGCAGTATCGCCAGCAAATAGCCCAGAAACACCA ATCCAAAATCAAGGATCAGGAGCAGACCCTCCTGAAGCTGCAGAGGGAAC GACAGGCTGTCTTCGACGACGCCTTCCGGGAGGATATGGAGGAGTACAAA CAGCGCGGCCAGCTGACAAAAATTCAAACCACCAGCAACAAGTTGGCTCT GGAGGAAGTCGTCCTTGAAGCCAACGAAGTGGAGACAAAGGATGCTCTGG AACAATTTCTAAATGGCTAACTCACATTGTTTGCTCATCTCGCAAAAGAC TACAATTTGTGCCTTTAAGTGCAATAAGCAGTGTAATTGTTAAAATATTT TAACGGGGACTTCTGAAAAATAACTTAATTTTTTCACAACATTTTCTTAC TGCATTTGAACGTTAAACTATTACATTAAAGGGAATTGGACATACAAAGA TTAATTATCAATGCCAAATTATTTTAACATACAAGGCATTTTAACATAAT TTGTTAAAGTAATTTCAAAATTGCTTTACTATCTCGGACAAAATATAGGC AAATTTAATATAAGTTTCAAATAATGAAGTCAAAGTAAAAGTGAATTTTC AGGAATCCCCCTAGTGTATATGAAATTTGTTGATGTGGCACCGTCACTGC ATGTTTTGACAGCGCTGAATAAACATTGTTTTTATAAAAAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6856-RA | 1498 | CG6856-RA | 112..1498 | 1..1387 | 6935 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2868 | 690..800 | 132 | 60.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18857385..18858253 | 1..869 | 99 | -> | Plus |
chr3L | 18858311..18858826 | 870..1385 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6856-RA | 1..867 | 104..970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dysb-RA | 1..867 | 104..970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dysb-RA | 1..867 | 104..970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6856-RA | 1..867 | 104..970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dysb-RA | 1..867 | 104..970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6856-RA | 1..1385 | 1..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dysb-RA | 1..1385 | 1..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dysb-RA | 7..1391 | 1..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6856-RA | 1..1385 | 1..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Dysb-RA | 7..1391 | 1..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18867777..18868645 | 1..869 | 100 | -> | Plus |
3L | 18868704..18869219 | 870..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18867777..18868645 | 1..869 | 100 | -> | Plus |
3L | 18868704..18869219 | 870..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18867777..18868645 | 1..869 | 100 | -> | Plus |
3L | 18868704..18869219 | 870..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18860877..18861745 | 1..869 | 100 | -> | Plus |
arm_3L | 18861804..18862319 | 870..1385 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18860877..18861745 | 1..869 | 100 | -> | Plus |
3L | 18861804..18862319 | 870..1385 | 100 | Plus |
Translation from 103 to 969
> RE09163.hyp MFGNLKKKLSSAIQEGLVISENLQQQYRQRVSSGNSGSSQASGITTPISP LGLNESLSSSRSSSLSLSAPFQLTDGVPSHLNVAAGCSLLAKYEDDWQQI HGANEKNAEKAAQIANQISGIQDQASHQHRIMSELNSSLAGIPTLIAQLQ NSSQVLNSLEEMGKQLEIELEKLEDLREECELQEFILEQQFQLSRHKQKK LNELEQYRQQIAQKHQSKIKDQEQTLLKLQRERQAVFDDAFREDMEEYKQ RGQLTKIQTTSNKLALEEVVLEANEVETKDALEQFLNG*
Translation from 103 to 969
> RE09163.pep MFGNLKKKLSSAIQEGLVISENLQQQYRQRVSSGNSGSSQASGITTPISP LGLNESLSSSRSSSLSLSAPFQLTDGVPSHLNVAAGCSLLAKYEDDWQQI HGANEKNAEKAAQIANQISGIQDQASHQHRIMSELNSSLAGIPTLIAQLQ NSSQVLNSLEEMGKQLEIELEKLEDLREECELQEFILEQQFQLSRHKQKK LNELEQYRQQIAQKHQSKIKDQEQTLLKLQRERQAVFDDAFREDMEEYKQ RGQLTKIQTTSNKLALEEVVLEANEVETKDALEQFLNG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23643-PA | 289 | GF23643-PA | 1..289 | 1..288 | 1095 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16007-PA | 288 | GG16007-PA | 1..288 | 1..288 | 1321 | 93.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14378-PA | 295 | GH14378-PA | 1..295 | 1..288 | 821 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dysb-PB | 288 | CG6856-PB | 1..288 | 1..288 | 1422 | 100 | Plus |
Dysb-PA | 288 | CG6856-PA | 1..288 | 1..288 | 1422 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11321-PA | 284 | GI11321-PA | 1..283 | 1..287 | 802 | 57.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21438-PA | 275 | GL21438-PA | 1..205 | 1..206 | 733 | 75.7 | Plus |
Dper\GL24884-PA | 96 | GL24884-PA | 56..96 | 248..288 | 157 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19908-PA | 290 | GA19908-PA | 1..290 | 1..288 | 1072 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14997-PA | 288 | GM14997-PA | 1..288 | 1..288 | 1351 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14774-PA | 210 | GD14774-PA | 1..203 | 1..203 | 913 | 94.1 | Plus |
Dsim\GD14775-PA | 62 | GD14775-PA | 1..62 | 227..288 | 309 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11577-PA | 284 | GJ11577-PA | 1..284 | 1..288 | 921 | 70.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20446-PA | 296 | GK20446-PA | 1..296 | 1..288 | 837 | 67.9 | Plus |