Clone RE09177 Report

Search the DGRC for RE09177

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:91
Well:77
Vector:pFlc-1
Associated Gene/TranscriptCG13806-RA
Protein status:RE09177.pep: gold
Preliminary Size:900
Sequenced Size:1192

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13806 2002-01-01 Sim4 clustering to Release 2
CG13806 2002-02-26 Blastp of sequenced clone
CG13806 2003-01-01 Sim4 clustering to Release 3
CG13806 2008-04-29 Release 5.5 accounting
CG13806 2008-08-15 Release 5.9 accounting
CG13806 2008-12-18 5.12 accounting

Clone Sequence Records

RE09177.complete Sequence

1192 bp (1192 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089572

> RE09177.complete
ACTTTTATTGCTGTCACCATATGAGTCTGAATCAGACAATCGAAGATTCT
CGTGGAAGTTGGACCTAAACTAACCAGAAACAAAGTCCAAAAGGGGAAAT
ACATCGTCATGTTCTTGGAAAGAATACTAGTGAGCGTGTTACTGCTCAAC
CTGGTGGCTCTGCTTATGGGAGCCACTGTTACCACCCGGCGCATCCAGCC
GCGGGAGACAAACTCCTGCGAGGGCCGTCAGAGTCCCGGGCCCATCTGCG
AGTCCTGCGAGCTGCTGGCCACCTGCGTGCGTCACTCCAACGGATGGGTG
AACATTCCCGTGGAATCGTGCGACGTGGCTAATGGATACTACTGCAACGC
CCGGCTGGGGAGCTGCACCAACGAGACGGGCCCGTGTCATCCGTTCGGCA
TCGAGGGCAACTTTCAGTGCACCTCGCAAGGCATCTTTCCAGATCCGTAC
GACTGCCAGAAGTACCACATGTGCTACTTCGTGGGGGCCACTCTGGTGGC
TGCTGCCGTTGATTGCGGCAACGACAAGGCCTTCGATGCGACGACTGGCC
AGTGCACTTTGACCCTGACTGACTCCGTCTGCCTGCAGCGACAGTACTAC
TGCCCCAATGCCGGACACGTGGCCGCCTGGCCCACCAATCCCAATATCTT
CTACGTGTGCAAGTCGACGGTTAACCAGAACCTGAACGACACCATCGTCA
TCTACCCCTCGCTGCACAGGTGCAACGATGGCGAGACCTTCGTGGACTAC
GTCTGCCGCAGCGGATCGAATGTCCTGCCGCCCAGCACCGATGATCCTTC
GGTGATCATCGAGGATCCCAACGACGACGACTTTTCGGTGCTGCCCAACA
CCTGTCAGCACGTGGGCTTGATGGCCGATGGAAACGACTGCCGGAAGTAC
TACTACTGCTCGGCTCTAAATGGCACCCTGCGGCACATGGACTGCCCCAA
TGGGACTTACTACCGACCGGAGCTATCCTCCTGCGTCCTGGGAAGCTGCT
GAGGAAGATGCATTCCTGCACTTTATTTATTCCTCTTCAATGGATTACAT
TTAATAAACAACTCATGTTTACCCTGGAATAACAATCTATTTGACATGAA
TTTATGAATTCCCATTTCAAAAGGTATCAGTTTGATAATAAAGATTCAAC
CACCATGTCCGTGGGTAATTAAACCAAAAAAAAAAAAAAAAA

RE09177.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13806-RA 1451 CG13806-RA 243..1418 1..1176 5880 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2266006..2267043 138..1175 5100 99.4 Plus
chr3L 24539361 chr3L 2265798..2265934 1..138 640 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:31:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2266603..2267641 138..1176 5195 100 Plus
3L 28110227 3L 2266394..2266531 1..138 690 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2266603..2267641 138..1176 5195 100 Plus
3L 28103327 3L 2266394..2266531 1..138 690 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:07:54 has no hits.

RE09177.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:08:42 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2265798..2265934 1..138 99 -> Plus
chr3L 2266007..2267043 139..1175 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:52:14 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG13806-RA 1..894 109..1002 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:34:03 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG13806-RA 1..894 109..1002 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:33:45 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG13806-RA 1..894 109..1002 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:19 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG13806-RA 1..894 109..1002 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:56:45 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG13806-RA 1..894 109..1002 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:59:50 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG13806-RA 1..1175 1..1175 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:34:03 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG13806-RA 1..1175 1..1175 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:33:45 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG13806-RA 1..1175 1..1175 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:19 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG13806-RA 1..1175 1..1175 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:56:45 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG13806-RA 1..1175 1..1175 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:42 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2266394..2266531 1..138 100 -> Plus
3L 2266604..2267640 139..1175 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:42 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2266394..2266531 1..138 100 -> Plus
3L 2266604..2267640 139..1175 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:08:42 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2266394..2266531 1..138 100 -> Plus
3L 2266604..2267640 139..1175 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:33:45 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2266394..2266531 1..138 100 -> Plus
arm_3L 2266604..2267640 139..1175 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:09 Download gff for RE09177.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2266604..2267640 139..1175 100   Plus
3L 2266394..2266531 1..138 100 -> Plus

RE09177.pep Sequence

Translation from 108 to 1001

> RE09177.pep
MFLERILVSVLLLNLVALLMGATVTTRRIQPRETNSCEGRQSPGPICESC
ELLATCVRHSNGWVNIPVESCDVANGYYCNARLGSCTNETGPCHPFGIEG
NFQCTSQGIFPDPYDCQKYHMCYFVGATLVAAAVDCGNDKAFDATTGQCT
LTLTDSVCLQRQYYCPNAGHVAAWPTNPNIFYVCKSTVNQNLNDTIVIYP
SLHRCNDGETFVDYVCRSGSNVLPPSTDDPSVIIEDPNDDDFSVLPNTCQ
HVGLMADGNDCRKYYYCSALNGTLRHMDCPNGTYYRPELSSCVLGSC*

RE09177.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24908-PA 299 GF24908-PA 1..299 1..297 1391 86 Plus
Dana\GF24910-PA 342 GF24910-PA 7..269 7..292 271 26 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14852-PA 297 GG14852-PA 1..297 1..297 1547 96.3 Plus
Dere\GG14854-PA 313 GG14854-PA 2..257 5..293 266 27.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16470-PA 296 GH16470-PA 1..296 1..297 1176 73.7 Plus
Dgri\GH16471-PA 280 GH16471-PA 1..224 10..227 249 26.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13806-PA 297 CG13806-PA 1..297 1..297 1659 100 Plus
CG32302-PA 313 CG32302-PA 24..258 35..293 301 28.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12142-PA 300 GI12142-PA 1..300 1..297 1214 74.8 Plus
Dmoj\GI12143-PA 266 GI12143-PA 31..255 34..285 251 26.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24644-PA 297 GL24644-PA 1..297 1..297 1290 82.9 Plus
Dper\GL24645-PA 344 GL24645-PA 20..273 22..296 282 27.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12542-PA 297 GA12542-PA 1..297 1..297 1290 82.9 Plus
Dpse\GA16817-PA 344 GA16817-PA 16..344 18..297 269 27 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14477-PA 297 GM14477-PA 1..297 1..297 1580 99.7 Plus
Dsec\GM14480-PA 312 GM14480-PA 10..257 18..293 267 27.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13674-PA 297 GD13674-PA 1..297 1..297 1570 99 Plus
Dsim\GD13676-PA 312 GD13676-PA 10..257 18..293 266 27.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13421-PA 295 GJ13421-PA 1..295 1..297 1200 75.8 Plus
Dvir\GJ13422-PA 370 GJ13422-PA 36..273 34..296 256 28.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12631-PA 301 GK12631-PA 1..301 1..297 1178 71.8 Plus
Dwil\GK12632-PA 214 GK12632-PA 37..213 34..216 276 33.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20309-PA 297 GE20309-PA 1..297 1..297 1546 96.3 Plus
Dyak\GE20311-PA 313 GE20311-PA 2..257 5..293 267 28.2 Plus

RE09177.hyp Sequence

Translation from 108 to 1001

> RE09177.hyp
MFLERILVSVLLLNLVALLMGATVTTRRIQPRETNSCEGRQSPGPICESC
ELLATCVRHSNGWVNIPVESCDVANGYYCNARLGSCTNETGPCHPFGIEG
NFQCTSQGIFPDPYDCQKYHMCYFVGATLVAAAVDCGNDKAFDATTGQCT
LTLTDSVCLQRQYYCPNAGHVAAWPTNPNIFYVCKSTVNQNLNDTIVIYP
SLHRCNDGETFVDYVCRSGSNVLPPSTDDPSVIIEDPNDDDFSVLPNTCQ
HVGLMADGNDCRKYYYCSALNGTLRHMDCPNGTYYRPELSSCVLGSC*

RE09177.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13806-PA 297 CG13806-PA 1..297 1..297 1659 100 Plus
CG32302-PA 313 CG32302-PA 24..258 35..293 301 28.7 Plus