BDGP Sequence Production Resources |
Search the DGRC for RE09212
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 92 |
Well: | 12 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Eaf6-RA |
Protein status: | RE09212.pep: gold |
Preliminary Size: | 678 |
Sequenced Size: | 821 |
Gene | Date | Evidence |
---|---|---|
CG12756 | 2001-12-14 | Blastp of sequenced clone |
CG12756 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12756 | 2003-01-01 | Sim4 clustering to Release 3 |
Eaf6 | 2008-04-29 | Release 5.5 accounting |
Eaf6 | 2008-08-15 | Release 5.9 accounting |
Eaf6 | 2008-12-18 | 5.12 accounting |
821 bp (821 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071012
> RE09212.complete TGGAAAATATGAGCTCGCCAACGAGTAAAAATGTCAGCGAAACGAACGGG AACAAGCCAAAGAAGTCGGCCAAAACGAGCTCGAATACGAAAGGCGGCTC CATGGACACTCGCGCCGAGTTGGCGGACCTCATCAAGAAGAAGGCCGAAA CATCGGAACAACTGGCCAATCTGGAGCGACAGATCTACGCCTTCGAGGGC TCCTACCTAGAGGACACGCAGTTGTGCGGAAACATCATCCGAGGCTGGGA GCGCTATCTGACCTCCAACAAGGCCACCAACTCCAAGGCCGACAAGCGGA ATCGCAAGTTCAAGGAGGCCGAGCGCCTGTTCTCCAAGTCCAGCATCACC TCCATGGCTATATGCAATCCTGAGCGCGCCAGCGAATCGGATTCCATCAC AAATGAAGACTCCAGCGACAATCAGATCTCAATCAATCAGAACACCACAA CGGCCCACGACGGAACCACGACAATCAAGAGCACACCGAAAGACGAAAAG GATTCACCCTCGCATCGCAATGAGGGCAGCGTAGTGAGCGGAATGGTGTC TGGATCTACGAACAGTGGAGGGAACAAGGATCTCCTCGGCACACCCACTT CGAATACAAAGAGCAAACTATCCACGAACTCCAGTGCGACAGCGAAGAAA AGCGGTCACATAAACAAGAAGATTCGACATCGATGATAACTGCTACCGTG TAATCCGCATCTGATAAAGCACTATTTACCTTCAAAGTTTTTAAATTAAA ATTTGTACATGAAATAAAGCGAATGTAGATTTACAAACTTAGTTTATTTC CATACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Eaf6-RA | 1011 | Eaf6-RA | 150..955 | 3..808 | 4030 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 5599713..5600017 | 805..501 | 1510 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 5600380..5600594 | 369..155 | 1060 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 5600660..5600813 | 156..3 | 770 | 100 | Minus |
chr3L | 24539361 | chr3L | 5600103..5600234 | 501..370 | 660 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 5607159..5607466 | 808..501 | 1540 | 100 | Minus |
3L | 28110227 | 3L | 5607806..5608020 | 369..155 | 1075 | 100 | Minus |
3L | 28110227 | 3L | 5608086..5608239 | 156..3 | 770 | 100 | Minus |
3L | 28110227 | 3L | 5607552..5607683 | 501..370 | 660 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 5600259..5600566 | 808..501 | 1540 | 100 | Minus |
3L | 28103327 | 3L | 5600906..5601120 | 369..155 | 1075 | 100 | Minus |
3L | 28103327 | 3L | 5601186..5601339 | 156..3 | 770 | 100 | Minus |
3L | 28103327 | 3L | 5600652..5600783 | 501..370 | 660 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 5599713..5600016 | 502..805 | 99 | <- | Minus |
chr3L | 5600103..5600234 | 370..501 | 100 | <- | Minus |
chr3L | 5600380..5600593 | 156..369 | 99 | <- | Minus |
chr3L | 5600661..5600814 | 1..155 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Eaf6-RA | 1..678 | 9..686 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Eaf6-RA | 1..678 | 9..686 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Eaf6-RA | 1..678 | 9..686 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Eaf6-RA | 1..678 | 9..686 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Eaf6-RA | 1..678 | 9..686 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Eaf6-RA | 2..804 | 3..805 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Eaf6-RA | 79..882 | 1..805 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Eaf6-RA | 61..864 | 1..805 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Eaf6-RA | 2..804 | 3..805 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Eaf6-RA | 61..864 | 1..805 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5607162..5607465 | 502..805 | 100 | <- | Minus |
3L | 5607552..5607683 | 370..501 | 100 | <- | Minus |
3L | 5607806..5608019 | 156..369 | 100 | <- | Minus |
3L | 5608087..5608240 | 1..155 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5607162..5607465 | 502..805 | 100 | <- | Minus |
3L | 5607552..5607683 | 370..501 | 100 | <- | Minus |
3L | 5607806..5608019 | 156..369 | 100 | <- | Minus |
3L | 5608087..5608240 | 1..155 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5607162..5607465 | 502..805 | 100 | <- | Minus |
3L | 5607552..5607683 | 370..501 | 100 | <- | Minus |
3L | 5607806..5608019 | 156..369 | 100 | <- | Minus |
3L | 5608087..5608240 | 1..155 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 5600262..5600565 | 502..805 | 100 | <- | Minus |
arm_3L | 5600652..5600783 | 370..501 | 100 | <- | Minus |
arm_3L | 5600906..5601119 | 156..369 | 100 | <- | Minus |
arm_3L | 5601187..5601340 | 1..155 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5600262..5600565 | 502..805 | 100 | <- | Minus |
3L | 5600652..5600783 | 370..501 | 100 | <- | Minus |
3L | 5600906..5601119 | 156..369 | 100 | <- | Minus |
3L | 5601187..5601340 | 1..155 | 99 | Minus |
Translation from 2 to 685
> RE09212.hyp ENMSSPTSKNVSETNGNKPKKSAKTSSNTKGGSMDTRAELADLIKKKAET SEQLANLERQIYAFEGSYLEDTQLCGNIIRGWERYLTSNKATNSKADKRN RKFKEAERLFSKSSITSMAICNPERASESDSITNEDSSDNQISINQNTTT AHDGTTTIKSTPKDEKDSPSHRNEGSVVSGMVSGSTNSGGNKDLLGTPTS NTKSKLSTNSSATAKKSGHINKKIRHR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Eaf6-PA | 225 | CG12756-PA | 1..225 | 3..227 | 1140 | 100 | Plus |
Translation from 8 to 685
> RE09212.pep MSSPTSKNVSETNGNKPKKSAKTSSNTKGGSMDTRAELADLIKKKAETSE QLANLERQIYAFEGSYLEDTQLCGNIIRGWERYLTSNKATNSKADKRNRK FKEAERLFSKSSITSMAICNPERASESDSITNEDSSDNQISINQNTTTAH DGTTTIKSTPKDEKDSPSHRNEGSVVSGMVSGSTNSGGNKDLLGTPTSNT KSKLSTNSSATAKKSGHINKKIRHR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10452-PA | 232 | GF10452-PA | 1..232 | 1..225 | 928 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14120-PA | 225 | GG14120-PA | 1..225 | 1..225 | 1145 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15014-PA | 220 | GH15014-PA | 1..220 | 1..225 | 895 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Eaf6-PA | 225 | CG12756-PA | 1..225 | 1..225 | 1140 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13176-PA | 216 | GI13176-PA | 1..216 | 1..225 | 863 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11974-PA | 219 | GL11974-PA | 1..172 | 1..172 | 849 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11793-PA | 229 | GA11793-PA | 1..229 | 1..225 | 910 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13906-PA | 225 | GM13906-PA | 1..225 | 1..225 | 1151 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13183-PA | 225 | GD13183-PA | 1..225 | 1..225 | 1151 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11951-PA | 219 | GJ11951-PA | 1..219 | 1..225 | 887 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17301-PA | 225 | GK17301-PA | 1..225 | 1..225 | 958 | 89.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20544-PA | 225 | GE20544-PA | 1..225 | 1..225 | 1084 | 96.9 | Plus |