Clone RE09223 Report

Search the DGRC for RE09223

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:92
Well:23
Vector:pFlc-1
Associated Gene/TranscriptmRpL45-RA
Protein status:RE09223.pep: gold
Sequenced Size:1281

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6949 2001-12-14 Blastp of sequenced clone
CG6949 2002-01-01 Sim4 clustering to Release 2
CG6949 2003-01-01 Sim4 clustering to Release 3
mRpL45 2008-04-29 Release 5.5 accounting
mRpL45 2008-08-15 Release 5.9 accounting
mRpL45 2008-12-18 5.12 accounting

Clone Sequence Records

RE09223.complete Sequence

1281 bp (1281 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071013

> RE09223.complete
TGAGTGTGTTTCCGTTGATTCTTCCAAAGTTTGTTATTGCGGAGTTTCCT
ATTTATATAATAGAAATAAAATACAATGGAGAAGCTAGCGTCGGCCAAAA
CGTGTCTTAAACTGCTGCAGGTTATGCCCGGCGTGCAGCAGGCGGCCCTT
CTTCCTGGTGGTGGCCTGGGCGTGCTCGCTTCTCCTCTTCAGAATCTGAT
CCAGATGCAGCAGGTGCGCCACCGACAAACCAAGCACTGGAAGCCCGAGT
TCAAGCGCCTTCGTAAGCTCAAGTTCGTAAAGATGGATCTGCCCAATCTG
CGCGAGAAACAGGAGGATATCACCAAGGAGGAGATGCGCAGCCGGATGAA
GGAGCGAGGTGTCTTGCCGCCCCGTCCCTGGATGGAGCGCCCTTTCCACA
TAAGCTGCACGGGCGGCATCTTCGAGGCTTATGTCCCTCCTGAAGGCGAC
GGCAAGAAGTCGATCATTTCAACATCGGGTGCCAAGCAGAAGTTGGAGTT
CCTGGAGAAGAAGTCCAAGAGCCTGATGGCCGTGCGCAAGATTCGTTCCT
ACGACGAAAACTTCAGCTCCGATGATTTCGGCGCCGAGGCCCAGGATATT
TACATCCAGGCGCACACTCACATGGCTGCCAAGGACAAGTACAAGATCCG
CGAGTTCGTCAGCGAACGCTGTTATCCGGAGATGATGCACAACGTCAAGG
ACAAGACCATTCGCTGGAAGTTTCTACAGTCGCTGGAACCACCACGCGTT
GTCCATGCCCGCGTGACGGAGGTGATCACCAAGGAAAACCAGTTCGCTCA
AGTCACCGTGCGCTTCCACAGCCAACAGATGTTAGCCATCTACGACCGCT
TCGGCCGCCTGATGCACGGCAGCGAGATCATCACCAAGGACGTGCTGGAA
TATGTGGTGTTTGAGAAGCACATTTCGAACGAGTATGGCAAATGGCGACT
GCACGACAAGATCATCCCCGACTGGTTGCCGGCCAAGCAGCCCGCTCCCA
TTACCTATCGTCTCATCGAGGATGCAGAGGAGCCACCCAAGGAACTGAGT
GCCGGGGATGCCGAGGTGAAACAGGTGGACTCAGTTGGCGAACAATCCAA
GGAGCAACTGCCACTGGCAACACCGGTGGAGAGCCATACCAAGCCGTCCC
TGGCCATTTGATTGTACTTTTTGTGGGCCGCCTGGCGGCTCAGAAGAATG
CGTGTTAACATTGCCTAATGATTTTTGAGTCGCCATTTGGTTAAATTATA
ATTTTTAAAACTGTTAAAAAAAAAAAAAAAA

RE09223.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL45-RA 1806 mRpL45-RA 123..1386 3..1266 6320 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18442218..18443365 118..1265 5740 100 Plus
chr3R 27901430 chr3R 18442036..18442155 3..122 600 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:31:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22618679..22619827 118..1266 5745 100 Plus
3R 32079331 3R 22618497..22618616 3..122 600 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22359510..22360658 118..1266 5745 100 Plus
3R 31820162 3R 22359328..22359447 3..122 600 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:36:46 has no hits.

RE09223.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:37:36 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18442034..18442153 1..120 99 -> Plus
chr3R 18442221..18443365 121..1265 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:52:17 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL45-RA 1..1086 76..1161 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:04:52 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL45-RA 1..1086 76..1161 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:36:26 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL45-RA 1..1086 76..1161 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:29:33 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL45-RA 1..1086 76..1161 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:46:02 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL45-RA 1..1086 76..1161 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:32:31 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL45-RA 13..1277 1..1265 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:04:52 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL45-RA 33..1297 1..1265 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:26 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL45-RA 33..1297 1..1265 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:29:33 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL45-RA 13..1277 1..1265 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:46:02 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL45-RA 4..1268 1..1265 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:36 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22618495..22618614 1..120 99 -> Plus
3R 22618682..22619826 121..1265 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:36 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22618495..22618614 1..120 99 -> Plus
3R 22618682..22619826 121..1265 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:37:36 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22618495..22618614 1..120 99 -> Plus
3R 22618682..22619826 121..1265 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:26 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18444217..18444336 1..120 99 -> Plus
arm_3R 18444404..18445548 121..1265 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:05:35 Download gff for RE09223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22359513..22360657 121..1265 100   Plus
3R 22359326..22359445 1..120 99 -> Plus

RE09223.hyp Sequence

Translation from 75 to 1160

> RE09223.hyp
MEKLASAKTCLKLLQVMPGVQQAALLPGGGLGVLASPLQNLIQMQQVRHR
QTKHWKPEFKRLRKLKFVKMDLPNLREKQEDITKEEMRSRMKERGVLPPR
PWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKLEFLEKKSKSL
MAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCY
PEMMHNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQ
QMLAIYDRFGRLMHGSEIITKDVLEYVVFEKHISNEYGKWRLHDKIIPDW
LPAKQPAPITYRLIEDAEEPPKELSAGDAEVKQVDSVGEQSKEQLPLATP
VESHTKPSLAI*

RE09223.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL45-PA 361 CG6949-PA 1..361 1..361 1880 100 Plus

RE09223.pep Sequence

Translation from 75 to 1160

> RE09223.pep
MEKLASAKTCLKLLQVMPGVQQAALLPGGGLGVLASPLQNLIQMQQVRHR
QTKHWKPEFKRLRKLKFVKMDLPNLREKQEDITKEEMRSRMKERGVLPPR
PWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKLEFLEKKSKSL
MAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCY
PEMMHNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQ
QMLAIYDRFGRLMHGSEIITKDVLEYVVFEKHISNEYGKWRLHDKIIPDW
LPAKQPAPITYRLIEDAEEPPKELSAGDAEVKQVDSVGEQSKEQLPLATP
VESHTKPSLAI*

RE09223.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18867-PA 360 GF18867-PA 1..360 1..361 1668 86.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11153-PA 361 GG11153-PA 1..361 1..361 1872 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22480-PA 353 GH22480-PA 15..353 30..361 1423 76.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL45-PA 361 CG6949-PA 1..361 1..361 1880 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22249-PA 362 GI22249-PA 1..362 1..361 1501 78.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13752-PA 352 GL13752-PA 1..352 1..361 1563 82.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19976-PA 352 GA19976-PA 1..352 1..361 1568 82.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26453-PA 362 GM26453-PA 1..362 1..361 1881 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20969-PA 335 GD20969-PA 1..335 1..361 1706 90.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10851-PA 362 GJ10851-PA 16..362 22..361 1442 78.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11306-PA 337 GK11306-PA 1..337 1..361 1462 76.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10319-PA 361 GE10319-PA 1..361 1..361 1849 95.3 Plus