BDGP Sequence Production Resources |
Search the DGRC for RE09223
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 92 |
Well: | 23 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mRpL45-RA |
Protein status: | RE09223.pep: gold |
Sequenced Size: | 1281 |
Gene | Date | Evidence |
---|---|---|
CG6949 | 2001-12-14 | Blastp of sequenced clone |
CG6949 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6949 | 2003-01-01 | Sim4 clustering to Release 3 |
mRpL45 | 2008-04-29 | Release 5.5 accounting |
mRpL45 | 2008-08-15 | Release 5.9 accounting |
mRpL45 | 2008-12-18 | 5.12 accounting |
1281 bp (1281 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071013
> RE09223.complete TGAGTGTGTTTCCGTTGATTCTTCCAAAGTTTGTTATTGCGGAGTTTCCT ATTTATATAATAGAAATAAAATACAATGGAGAAGCTAGCGTCGGCCAAAA CGTGTCTTAAACTGCTGCAGGTTATGCCCGGCGTGCAGCAGGCGGCCCTT CTTCCTGGTGGTGGCCTGGGCGTGCTCGCTTCTCCTCTTCAGAATCTGAT CCAGATGCAGCAGGTGCGCCACCGACAAACCAAGCACTGGAAGCCCGAGT TCAAGCGCCTTCGTAAGCTCAAGTTCGTAAAGATGGATCTGCCCAATCTG CGCGAGAAACAGGAGGATATCACCAAGGAGGAGATGCGCAGCCGGATGAA GGAGCGAGGTGTCTTGCCGCCCCGTCCCTGGATGGAGCGCCCTTTCCACA TAAGCTGCACGGGCGGCATCTTCGAGGCTTATGTCCCTCCTGAAGGCGAC GGCAAGAAGTCGATCATTTCAACATCGGGTGCCAAGCAGAAGTTGGAGTT CCTGGAGAAGAAGTCCAAGAGCCTGATGGCCGTGCGCAAGATTCGTTCCT ACGACGAAAACTTCAGCTCCGATGATTTCGGCGCCGAGGCCCAGGATATT TACATCCAGGCGCACACTCACATGGCTGCCAAGGACAAGTACAAGATCCG CGAGTTCGTCAGCGAACGCTGTTATCCGGAGATGATGCACAACGTCAAGG ACAAGACCATTCGCTGGAAGTTTCTACAGTCGCTGGAACCACCACGCGTT GTCCATGCCCGCGTGACGGAGGTGATCACCAAGGAAAACCAGTTCGCTCA AGTCACCGTGCGCTTCCACAGCCAACAGATGTTAGCCATCTACGACCGCT TCGGCCGCCTGATGCACGGCAGCGAGATCATCACCAAGGACGTGCTGGAA TATGTGGTGTTTGAGAAGCACATTTCGAACGAGTATGGCAAATGGCGACT GCACGACAAGATCATCCCCGACTGGTTGCCGGCCAAGCAGCCCGCTCCCA TTACCTATCGTCTCATCGAGGATGCAGAGGAGCCACCCAAGGAACTGAGT GCCGGGGATGCCGAGGTGAAACAGGTGGACTCAGTTGGCGAACAATCCAA GGAGCAACTGCCACTGGCAACACCGGTGGAGAGCCATACCAAGCCGTCCC TGGCCATTTGATTGTACTTTTTGTGGGCCGCCTGGCGGCTCAGAAGAATG CGTGTTAACATTGCCTAATGATTTTTGAGTCGCCATTTGGTTAAATTATA ATTTTTAAAACTGTTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL45-RA | 1806 | mRpL45-RA | 123..1386 | 3..1266 | 6320 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 18442034..18442153 | 1..120 | 99 | -> | Plus |
chr3R | 18442221..18443365 | 121..1265 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL45-RA | 1..1086 | 76..1161 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL45-RA | 1..1086 | 76..1161 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL45-RA | 1..1086 | 76..1161 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL45-RA | 1..1086 | 76..1161 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL45-RA | 1..1086 | 76..1161 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL45-RA | 13..1277 | 1..1265 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL45-RA | 33..1297 | 1..1265 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL45-RA | 33..1297 | 1..1265 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL45-RA | 13..1277 | 1..1265 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL45-RA | 4..1268 | 1..1265 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22618495..22618614 | 1..120 | 99 | -> | Plus |
3R | 22618682..22619826 | 121..1265 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22618495..22618614 | 1..120 | 99 | -> | Plus |
3R | 22618682..22619826 | 121..1265 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22618495..22618614 | 1..120 | 99 | -> | Plus |
3R | 22618682..22619826 | 121..1265 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 18444217..18444336 | 1..120 | 99 | -> | Plus |
arm_3R | 18444404..18445548 | 121..1265 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22359513..22360657 | 121..1265 | 100 | Plus | |
3R | 22359326..22359445 | 1..120 | 99 | -> | Plus |
Translation from 75 to 1160
> RE09223.hyp MEKLASAKTCLKLLQVMPGVQQAALLPGGGLGVLASPLQNLIQMQQVRHR QTKHWKPEFKRLRKLKFVKMDLPNLREKQEDITKEEMRSRMKERGVLPPR PWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKLEFLEKKSKSL MAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCY PEMMHNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQ QMLAIYDRFGRLMHGSEIITKDVLEYVVFEKHISNEYGKWRLHDKIIPDW LPAKQPAPITYRLIEDAEEPPKELSAGDAEVKQVDSVGEQSKEQLPLATP VESHTKPSLAI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL45-PA | 361 | CG6949-PA | 1..361 | 1..361 | 1880 | 100 | Plus |
Translation from 75 to 1160
> RE09223.pep MEKLASAKTCLKLLQVMPGVQQAALLPGGGLGVLASPLQNLIQMQQVRHR QTKHWKPEFKRLRKLKFVKMDLPNLREKQEDITKEEMRSRMKERGVLPPR PWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKLEFLEKKSKSL MAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCY PEMMHNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQ QMLAIYDRFGRLMHGSEIITKDVLEYVVFEKHISNEYGKWRLHDKIIPDW LPAKQPAPITYRLIEDAEEPPKELSAGDAEVKQVDSVGEQSKEQLPLATP VESHTKPSLAI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18867-PA | 360 | GF18867-PA | 1..360 | 1..361 | 1668 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11153-PA | 361 | GG11153-PA | 1..361 | 1..361 | 1872 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22480-PA | 353 | GH22480-PA | 15..353 | 30..361 | 1423 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL45-PA | 361 | CG6949-PA | 1..361 | 1..361 | 1880 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22249-PA | 362 | GI22249-PA | 1..362 | 1..361 | 1501 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13752-PA | 352 | GL13752-PA | 1..352 | 1..361 | 1563 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19976-PA | 352 | GA19976-PA | 1..352 | 1..361 | 1568 | 82.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26453-PA | 362 | GM26453-PA | 1..362 | 1..361 | 1881 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20969-PA | 335 | GD20969-PA | 1..335 | 1..361 | 1706 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10851-PA | 362 | GJ10851-PA | 16..362 | 22..361 | 1442 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11306-PA | 337 | GK11306-PA | 1..337 | 1..361 | 1462 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10319-PA | 361 | GE10319-PA | 1..361 | 1..361 | 1849 | 95.3 | Plus |