Clone RE09535 Report

Search the DGRC for RE09535

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:95
Well:35
Vector:pFlc-1
Associated Gene/TranscriptHnf4-RA
Protein status:RE09535.pep: gold
Preliminary Size:4018
Sequenced Size:3333

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9310 2002-01-01 Sim4 clustering to Release 2
CG9310 2002-04-04 Blastp of sequenced clone
CG9310 2003-01-01 Sim4 clustering to Release 3
Hnf4 2008-04-29 Release 5.5 accounting
Hnf4 2008-08-15 Release 5.9 accounting
Hnf4 2008-12-18 5.12 accounting

Clone Sequence Records

RE09535.complete Sequence

3333 bp (3333 high quality bases) assembled on 2002-04-04

GenBank Submission: BT003533

> RE09535.complete
AGTTGAATTCCAGTGACGTTGGAAGAAACAACTGCAAAAGGCAAAAACAA
AGACAATGTTTATAAGCTGTATATTCCGCTTTGATTGATATAAATGAATA
TATGCAGTGCGCCAGTTATACAACTGCCCTGCAAAAGTCACTCATTAAAT
AAAAAACGCCCGAGATGAATTTCACAGCGGCGGCAACAAGTGCAATAATA
GTAAAAAATCAAAAGCCAAACAACGAAATCTCTCCCAAAAAAACGAAGAA
GCGTGTCGCGGTGCCAAAAAGAAAACAAAAATAGAAAAATACACAACAAA
ATAATACGGAGAAACGTTAATTATAACGAGCCACAAAATCGCATAAAGAA
ATCAACAAGTGTGTGTCTGCCTTTTTTTCCATATTCGCTTTCATTCATGC
GGTCAACTCAACAATAACAACTCAAAATAGCAACAACAACAATAACAATA
TCAACAAGAGCAGCAGCAGTCGCTGATAAAAGCCCTGCAGCTAAAACAAC
AACAAAACAACAAAGATAGTTAGAAAGAACATCGTCTGGCCATTGAGCTT
TAATTGCCGGTCATTACTTCATTACTATGTGATTGGATCTTCCCGACCCA
CTTGTAAATAAAAAGTAAAAATACTGGTTATGAAGCATGATGAAGCATCC
GCAGGATCTGAGTGTCACGGATGACCAGCAGTTAATGAAGGTGAACAAGG
TGGAGAAGATGGAGCAGGAGTTGCACGACCCCGAATCGGAGAGCCACATA
ATGCACGCGGATGCCCTGGCCTCTGCCTATCCGGCTGCCTCGCAGCCCCA
CAGTCCGATCGGCCTCGCCCTCAGCCCCAATGGCGGTGGGCTGGGACTGA
GCAACAGTAGCAACCAGAGCAGCGAGAACTTTGCGCTCTGCAACGGAAAC
GGAAATGCGGGCAGCGCAGGAGGCGGAAGTGCCAGCAGTGGCAGCAACAA
CAACAACAGCATGTTCTCACCCAACAACAACTTGAGCGGAAGCGGAAGTG
GGACTAACAGCAGTCAGCAGCAATTGCAGCAGCAACAACAACAGCAATCA
CCGACGGTCTGCGCCATTTGTGGAGATCGGGCGACGGGCAAACATTATGG
AGCCTCCAGCTGCGACGGCTGCAAAGGATTCTTCAGGAGGAGTGTCAGGA
AAAATCATCAGTACACTTGCAGATTTGCGCGAAACTGCGTTGTGGACAAG
GACAAACGGAATCAGTGCCGCTACTGCCGGCTGAGGAAGTGCTTCAAGGC
GGGCATGAAGAAGGAGGCGGTGCAAAACGAGCGGGATCGCATTAGCTGCC
GCCGCACCTCCAATGACGACCCGGATCCGGGCAATGGGCTGTCTGTGATT
TCCTTGGTTAAGGCGGAGAATGAGTCGCGTCAGTCGAAGGCAGGCGCTGC
CATGGAGCCAAACATTAACGAGGACCTCTCCAACAAGCAGTTCGCGAGCA
TCAACGATGTCTGCGAGTCGATGAAGCAGCAGCTGCTGACCCTGGTGGAA
TGGGCTAAGCAGATTCCGGCCTTTAACGAGCTGCAGCTGGATGACCAGGT
GGCACTGCTACGCGCCCATGCTGGCGAGCATTTGCTCCTCGGCCTGTCTC
GTCGTTCGATGCACTTGAAGGATGTTCTCCTGCTGAGCAACAATTGTGTG
ATCACAAGGCACTGTCCAGATCCCCTTGTGTCGCCGAATTTGGACATCTC
CCGGATCGGCGCCCGTATCATCGATGAACTGGTGACGGTCATGAAGGATG
TGGGTATCGATGACACTGAATTCGCTTGCATCAAGGCCCTAGTCTTCTTC
GATCCCAATGCCAAGGGTCTTAATGAACCGCATCGCATCAAATCGCTACG
GCATCAGATACTCAATAATCTCGAGGACTACATATCAGATCGGCAATACG
AGTCGCGCGGTCGCTTTGGCGAGATTCTGCTCATCCTGCCGGTTCTGCAG
TCTATTACCTGGCAGATGATCGAGCAGATCCAGTTTGCCAAGATCTTTGG
AGTGGCCCACATTGATTCATTACTGCAGGAAATGTTGTTGGGAGGAGAGT
TGGCCGACAATCCTCTGCCGCTATCGCCGCCCAATCAGTCAAATGACTAC
CAGAGTCCCACCCACACAGGCAACATGGAGGGCGGTAATCAAGTTAACTC
CTCTCTGGACTCGCTGGCCACGTCCGGTGGTCCTGGCTCGCATAGTCTGG
ACCTGGAGGTGCAGCACATTCAGGCTCTTATCGAGGCGAACAGTGCGGAT
GATTCCTTCCGGGCCTACGCGGCCAGCACTGCAGCGGCAGCCGCTGCAGC
CGTCTCGTCCTCCTCCTCTGCACCCGCATCCGTTGCTCCAGCCTCGATCT
CTCCTCCGCTCAACAGCCCCAAGTCACAACATCAACATCAGCAACATGCG
ACGCATCAGCAACAACAGGAGAGCTCCTACTTGGACATGCCCGTCAAGCA
CTACAATGGCAGTCGGTCCGGACCGCTGCCAACACAGCACAGTCCCCAGA
GGATGCATCCCTACCAAAGAGCAGTCGCCTCGCCGGTCGAAGTGTCCAGC
GGGGGCGGCGGATTGGGTCTGCGCAATCCTGCCGATATTACGCTCAACGA
GTACAACCGGAGCGAGGGTAGCAGTGCCGAGGAGCTGCTGCGACGAACTC
CACTGAAGATCCGGGCTCCCGAGATGCTAACCGCACCCGCTGGTTATGGA
ACGGAACCCTGTCGCATGACACTTAAACAGGAGCCAGAGACTGGTTACTA
GAAGAATAACGAACGGTGCAATATGCAGTTTGCAATAGGACACCCCTTAA
GCACACAACCCATACACATACAGGCCCTCTCTTGCTGTACTCCCCACCAA
GTGCTATATAGAGATGAAATTGAAATGAAGAACTTACTTAATTGTTATGC
CTTGAACCATTTTGATACTTTTTATTAGTCCTAAGTAGGTATTTTGGAAA
TTGTTGCTTAATTTTTAATGTTTAACGCAGTTGCAATATATTTTTGGAGT
CATATTTTGCTCAAGAAGTTTATTATATACAATTATACTATATATATACA
CCATTTAGCATGTACTGAGTTTGTTGGTTATTTGGTTATCTTATACTTGT
GCGTGGATCACAAAACATTCATATAAGGCCATGCAATATATTGTTTTAGG
TTAGGGTGTTGTCTAGATTATGCTGAAAGTGTAATATATATTTAATTTTA
AACAAAGAACTATTTTTATATGAATATGTATAATATACAAACTATTTCTA
AGATGGCTGAATGAATAAACAAAATCAAAATAAACACTGGAGAATATGAA
TGTAAAAAAAAAAAACAAAAAAAAAAAAAAAAA

RE09535.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Hnf4.a 3883 Hnf4.a 574..3879 1..3306 16530 100 Plus
Hnf4-RA 3446 Hnf4-RA 137..3442 1..3306 16530 100 Plus
Hnf4-RB 2802 Hnf4-RB 224..2798 732..3306 12875 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8686769..8687427 2701..2043 3280 99.8 Minus
chr2L 23010047 chr2L 8686100..8686702 3306..2704 2985 99.7 Minus
chr2L 23010047 chr2L 8707366..8707918 553..1 2735 99.6 Minus
chr2L 23010047 chr2L 8688006..8688506 1669..1169 2505 100 Minus
chr2L 23010047 chr2L 8688691..8689130 1172..733 2200 100 Minus
chr2L 23010047 chr2L 8687497..8687734 2045..1808 1190 100 Minus
chr2L 23010047 chr2L 8703235..8703414 733..554 900 100 Minus
chr2L 23010047 chr2L 8687798..8687940 1807..1665 715 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:32:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8687889..8688550 2704..2043 3310 100 Minus
2L 23513712 2L 8687223..8687825 3306..2704 3015 100 Minus
2L 23513712 2L 8708486..8709038 553..1 2765 100 Minus
2L 23513712 2L 8689129..8689629 1669..1169 2505 100 Minus
2L 23513712 2L 8689814..8690253 1172..733 2200 100 Minus
2L 23513712 2L 8688620..8688857 2045..1808 1190 100 Minus
2L 23513712 2L 8704361..8704540 733..554 900 100 Minus
2L 23513712 2L 8688921..8689063 1807..1665 715 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8687889..8688550 2704..2043 3310 100 Minus
2L 23513712 2L 8687223..8687825 3306..2704 3015 100 Minus
2L 23513712 2L 8708486..8709038 553..1 2765 100 Minus
2L 23513712 2L 8689129..8689629 1669..1169 2505 100 Minus
2L 23513712 2L 8689814..8690253 1172..733 2200 100 Minus
2L 23513712 2L 8688620..8688857 2045..1808 1190 100 Minus
2L 23513712 2L 8704361..8704540 733..554 900 100 Minus
2L 23513712 2L 8688921..8689063 1807..1665 715 100 Minus
Blast to na_te.dros performed 2019-03-16 04:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6898 888..1053 232 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2304..2432 918..1047 224 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2291..2411 922..1053 220 70.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6852 933..1046 215 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6923 850..1042 204 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2317..2526 850..1055 202 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2478 888..1045 197 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6828 941..1043 195 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2427 409..533 190 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2767..2962 850..1046 185 59.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6816..6926 429..539 185 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2810..2927 941..1057 172 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2397..2497 409..504 170 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6792..6930 850..988 162 62.9 Plus
roo 9092 roo DM_ROO 9092bp 1027..1167 918..1056 159 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2371..2563 850..1045 154 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2456 2318..2462 153 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6782..6840 409..468 153 75 Plus
roo 9092 roo DM_ROO 9092bp 1042..1157 419..536 152 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..2927 409..538 148 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2847..2989 822..958 141 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6802 2361..2421 140 74.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6902 2274..2422 139 58.6 Plus
roo 9092 roo DM_ROO 9092bp 1061..1151 888..981 139 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1506..1614 931..1041 136 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6781..6922 2269..2418 135 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6860 2361..2430 135 71.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2331..2390 2361..2421 131 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6781 2361..2421 131 72.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2473 2269..2417 127 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2599..2642 426..469 121 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6891 2274..2417 121 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6708..6802 2370..2462 118 61.1 Plus
accord 7404 accord ACCORD 7404bp 4758..4950 3103..3298 117 54.8 Plus

RE09535.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:03:17 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8688892..8689129 734..971 100 <- Minus
chr2L 8703235..8703414 554..733 100 <- Minus
chr2L 8707366..8707450 469..553 98 == Minus
chr2L 8686103..8686701 2705..3303 96 <- Minus
chr2L 8686766..8687425 2045..2704 99 <- Minus
chr2L 8687498..8687734 1808..2044 100 <- Minus
chr2L 8687798..8687935 1670..1807 100 <- Minus
chr2L 8688006..8688502 1173..1669 100 <- Minus
chr2L 8688691..8688806 1057..1172 100 == Minus
chr2L 8707511..8707918 1..408 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:32:58 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 1..2115 637..2751 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:15:21 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 1..2115 637..2751 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:32 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 1..2115 637..2751 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:16 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 1..2115 637..2751 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:23:52 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 1..2115 637..2751 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:32:56 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 1..3248 1..3248 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:15:21 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 1..3248 1..3248 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:32 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 252..3554 1..3303 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:17 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 1..3248 1..3248 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:23:52 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
Hnf4-RA 5..3307 1..3303 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:17 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8704361..8704540 554..733 100 <- Minus
2L 8687226..8687824 2705..3303 100 <- Minus
2L 8687889..8688548 2045..2704 100 <- Minus
2L 8688621..8688857 1808..2044 100 <- Minus
2L 8688921..8689058 1670..1807 100 <- Minus
2L 8689129..8689625 1173..1669 100 <- Minus
2L 8689814..8690252 734..1172 100 <- Minus
2L 8708486..8709038 1..553 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:17 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8704361..8704540 554..733 100 <- Minus
2L 8687226..8687824 2705..3303 100 <- Minus
2L 8687889..8688548 2045..2704 100 <- Minus
2L 8688621..8688857 1808..2044 100 <- Minus
2L 8688921..8689058 1670..1807 100 <- Minus
2L 8689129..8689625 1173..1669 100 <- Minus
2L 8689814..8690252 734..1172 100 <- Minus
2L 8708486..8709038 1..553 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:03:17 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8704361..8704540 554..733 100 <- Minus
2L 8687226..8687824 2705..3303 100 <- Minus
2L 8687889..8688548 2045..2704 100 <- Minus
2L 8688621..8688857 1808..2044 100 <- Minus
2L 8688921..8689058 1670..1807 100 <- Minus
2L 8689129..8689625 1173..1669 100 <- Minus
2L 8689814..8690252 734..1172 100 <- Minus
2L 8708486..8709038 1..553 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:32 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8704361..8704540 554..733 100 <- Minus
arm_2L 8687226..8687824 2705..3303 100 <- Minus
arm_2L 8687889..8688548 2045..2704 100 <- Minus
arm_2L 8688621..8688857 1808..2044 100 <- Minus
arm_2L 8688921..8689058 1670..1807 100 <- Minus
arm_2L 8689129..8689625 1173..1669 100 <- Minus
arm_2L 8689814..8690252 734..1172 100 <- Minus
arm_2L 8708486..8709038 1..553 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:45 Download gff for RE09535.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8688621..8688857 1808..2044 100 <- Minus
2L 8688921..8689058 1670..1807 100 <- Minus
2L 8687226..8687824 2705..3303 100 <- Minus
2L 8687889..8688548 2045..2704 100 <- Minus
2L 8689129..8689625 1173..1669 100 <- Minus
2L 8689814..8690252 734..1172 100 <- Minus
2L 8704361..8704540 554..733 100 <- Minus
2L 8708486..8709038 1..553 100   Minus

RE09535.pep Sequence

Translation from 636 to 2750

> RE09535.pep
MMKHPQDLSVTDDQQLMKVNKVEKMEQELHDPESESHIMHADALASAYPA
ASQPHSPIGLALSPNGGGLGLSNSSNQSSENFALCNGNGNAGSAGGGSAS
SGSNNNNSMFSPNNNLSGSGSGTNSSQQQLQQQQQQQSPTVCAICGDRAT
GKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR
KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQS
KAGAAMEPNINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQ
LDDQVALLRAHAGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSP
NLDISRIGARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEPHR
IKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQSITWQMIEQIQF
AKIFGVAHIDSLLQEMLLGGELADNPLPLSPPNQSNDYQSPTHTGNMEGG
NQVNSSLDSLATSGGPGSHSLDLEVQHIQALIEANSADDSFRAYAASTAA
AAAAAVSSSSSAPASVAPASISPPLNSPKSQHQHQQHATHQQQQESSYLD
MPVKHYNGSRSGPLPTQHSPQRMHPYQRAVASPVEVSSGGGGLGLRNPAD
ITLNEYNRSEGSSAEELLRRTPLKIRAPEMLTAPAGYGTEPCRMTLKQEP
ETGY*

RE09535.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14359-PA 735 GF14359-PA 1..735 2..704 2829 79.2 Plus
Dana\GF17240-PA 826 GF17240-PA 205..537 142..470 601 37.8 Plus
Dana\GF14553-PA 1093 GF14553-PA 763..1088 141..468 372 28.4 Plus
Dana\GF21986-PA 512 GF21986-PA 102..182 138..218 317 63 Plus
Dana\GF10710-PA 612 GF10710-PA 53..138 138..223 297 55.8 Plus
Dana\GF21986-PA 512 GF21986-PA 277..499 271..467 231 26.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24056-PA 704 GG24056-PA 1..704 2..704 3648 97 Plus
Dere\GG18706-PA 543 GG18706-PA 200..532 142..470 599 37.8 Plus
Dere\GG21557-PA 1136 GG21557-PA 794..1131 130..468 373 27.6 Plus
Dere\GG12659-PA 507 GG12659-PA 78..179 117..218 320 53.9 Plus
Dere\GG11781-PA 438 GG11781-PA 34..110 142..216 288 59.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13232-PA 774 GH13232-PA 127..774 31..704 2457 75 Plus
Dgri\GH17319-PA 542 GH17319-PA 199..531 142..470 595 37.2 Plus
Dgri\GH10850-PA 1161 GH10850-PA 785..1156 111..468 369 26.4 Plus
Dgri\GH24408-PA 528 GH24408-PA 113..193 138..218 315 63 Plus
Dgri\GH14219-PA 445 GH14219-PA 34..110 142..216 288 59.7 Plus
Dgri\GH24408-PA 528 GH24408-PA 301..517 271..469 222 26.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Hnf4-PE 704 CG9310-PE 1..704 1..704 3662 100 Plus
Hnf4-PA 704 CG9310-PA 1..704 1..704 3662 100 Plus
Hnf4-PD 708 CG9310-PD 30..708 26..704 3503 99.4 Plus
Hnf4-PB 732 CG9310-PB 61..732 33..704 3494 100 Plus
Hnf4-PF 666 CG9310-PF 1..666 39..704 3464 100 Plus
svp-PB 543 CG11502-PB 97..532 29..470 594 34.1 Plus
svp-PE 554 CG11502-PE 97..532 29..470 594 34.1 Plus
usp-PB 508 CG4380-PB 56..495 97..467 468 28.8 Plus
usp-PA 508 CG4380-PA 56..495 97..467 468 28.8 Plus
svp-PA 746 CG11502-PA 97..450 29..388 465 33.9 Plus
Hr38-PD 836 CG1864-PD 479..831 115..468 374 26.8 Plus
Hr38-PB 1078 CG1864-PB 721..1073 115..468 374 26.8 Plus
ERR-PA 484 CG7404-PA 10..450 25..438 317 24.8 Plus
ERR-PB 496 CG7404-PB 22..462 25..438 317 24.8 Plus
svp-PC 281 CG11502-PC 2..270 206..470 311 33.1 Plus
Eip75B-PF 1412 CG8127-PF 417..972 99..624 300 22.7 Plus
Eip75B-PE 1412 CG8127-PE 417..972 99..624 300 22.7 Plus
Eip75B-PB 1412 CG8127-PB 417..972 99..624 300 22.7 Plus
Hr78-PF 601 CG7199-PF 7..153 80..236 295 40.9 Plus
Hr78-PE 601 CG7199-PE 7..153 80..236 295 40.9 Plus
Hr78-PB 601 CG7199-PB 7..153 80..236 295 40.9 Plus
Hr78-PD 601 CG7199-PD 7..153 80..236 295 40.9 Plus
Hr78-PC 601 CG7199-PC 7..153 80..236 295 40.9 Plus
ftz-f1-PB 1027 CG4059-PB 359..584 23..218 288 32.6 Plus
ftz-f1-PC 803 CG4059-PC 206..360 63..218 286 37.3 Plus
ftz-f1-PA 803 CG4059-PA 206..360 63..218 286 37.3 Plus
ftz-f1-PD 853 CG4059-PD 206..360 63..218 286 37.3 Plus
Eip78C-PE 862 CG18023-PE 236..437 45..216 284 34 Plus
Eip78C-PD 862 CG18023-PD 236..437 45..216 284 34 Plus
Eip78C-PA 862 CG18023-PA 236..437 45..216 284 34 Plus
Hr78-PA 599 CG7199-PA 7..151 80..236 279 40.9 Plus
EcR-PG 878 CG1765-PG 152..345 52..223 279 34.5 Plus
EcR-PB 878 CG1765-PB 152..345 52..223 279 34.5 Plus
tll-PA 452 CG1378-PA 34..110 142..216 274 59.7 Plus
Hr51-PC 582 CG16801-PC 15..186 27..216 273 35 Plus
Eip75B-PG 991 CG8127-PG 36..551 141..624 268 22.3 Plus
Eip75B-PC 1199 CG8127-PC 244..759 141..624 268 22.3 Plus
dsf-PB 691 CG9019-PB 13..91 142..216 267 58.2 Plus
dsf-PA 691 CG9019-PA 13..91 142..216 267 58.2 Plus
EcR-PE 849 CG1765-PE 162..316 71..223 263 36.1 Plus
EcR-PD 849 CG1765-PD 162..316 71..223 263 36.1 Plus
EcR-PA 849 CG1765-PA 162..316 71..223 263 36.1 Plus
Hr4-PC 1518 CG43934-PC 897..995 118..216 253 42.4 Plus
Hr4-PD 1529 CG43934-PD 907..1005 118..216 253 42.4 Plus
Hr4-PF 1611 CG43934-PF 990..1088 118..216 253 42.4 Plus
Hr4-PE 1842 CG43934-PE 1221..1319 118..216 253 42.4 Plus
Hr4-PK 1843 CG43934-PK 1221..1319 118..216 253 42.4 Plus
Hr4-PJ 1843 CG43934-PJ 1221..1319 118..216 253 42.4 Plus
Hr4-PH 1863 CG43934-PH 897..995 118..216 253 42.4 Plus
Hr4-PG 1986 CG43934-PG 1364..1462 118..216 253 42.4 Plus
Hr83-PA 278 CG10296-PA 5..82 140..216 242 53.8 Plus
Hr51-PC 582 CG16801-PC 384..579 275..466 213 30.3 Plus
dsf-PB 691 CG9019-PB 484..681 262..466 176 26.3 Plus
dsf-PA 691 CG9019-PA 484..681 262..466 176 26.3 Plus
EcR-PG 878 CG1765-PG 435..777 244..637 159 23.2 Plus
EcR-PB 878 CG1765-PB 435..777 244..637 159 23.2 Plus
EcR-PE 849 CG1765-PE 406..748 244..637 159 23.2 Plus
EcR-PD 849 CG1765-PD 406..748 244..637 159 23.2 Plus
EcR-PA 849 CG1765-PA 406..748 244..637 159 23.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12430-PA 715 GI12430-PA 73..715 37..704 2452 77.4 Plus
Dmoj\GI10282-PA 812 GI10282-PA 196..528 142..470 597 37.5 Plus
Dmoj\GI15428-PA 484 GI15428-PA 83..471 138..467 482 30.6 Plus
Dmoj\GI19631-PA 981 GI19631-PA 611..976 113..468 372 26.7 Plus
Dmoj\GI22125-PA 450 GI22125-PA 34..110 142..216 288 59.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26219-PA 518 GL26219-PA 1..506 2..505 2139 88 Plus
Dper\GL22274-PA 777 GL22274-PA 196..528 142..470 599 37.8 Plus
Dper\GL15129-PA 359 GL15129-PA 89..322 138..328 332 35.7 Plus
Dper\GL13521-PA 454 GL13521-PA 34..110 142..216 288 59.7 Plus
Dper\GL19597-PA 1004 GL19597-PA 769..978 136..341 286 30.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21689-PA 686 GA21689-PA 1..686 2..704 2762 82.6 Plus
Dpse\GA11038-PA 777 GA11038-PA 196..528 142..470 599 37.8 Plus
Dpse\GA18146-PA 487 GA18146-PA 89..474 138..467 489 30.7 Plus
Dpse\GA15026-PA 1132 GA15026-PA 797..1127 136..468 360 27.5 Plus
Dpse\GA12521-PA 454 GA12521-PA 34..110 142..216 288 59.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12759-PA 703 GM12759-PA 1..703 2..704 3686 98 Plus
Dsec\GM24010-PA 1085 GM24010-PA 200..457 142..388 407 34.8 Plus
Dsec\GM23314-PA 1075 GM23314-PA 733..1070 130..468 375 27.6 Plus
Dsec\GM18927-PA 505 GM18927-PA 97..177 138..218 315 63 Plus
Dsec\GM22136-PA 601 GM22136-PA 22..131 95..223 292 46.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22387-PA 703 GD22387-PA 1..703 2..704 3713 98.6 Plus
Dsim\GD18809-PA 680 GD18809-PA 200..532 142..470 601 37.8 Plus
Dsim\GD11109-PA 414 GD11109-PA 86..411 114..466 383 31.4 Plus
Dsim\GD21688-PA 556 GD21688-PA 214..551 130..468 365 27.6 Plus
Dsim\GD21550-PA 452 GD21550-PA 34..110 142..216 289 59.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17882-PA 679 GJ17882-PA 1..679 2..704 2586 77.6 Plus
Dvir\GJ11090-PA 787 GJ11090-PA 195..527 142..470 599 37.8 Plus
Dvir\GJ16389-PA 499 GJ16389-PA 94..486 138..467 484 30.5 Plus
Dvir\GJ17428-PA 878 GJ17428-PA 509..873 119..468 384 27.2 Plus
Dvir\tll-PA 450 GJ24246-PA 34..110 142..216 289 59.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18664-PA 691 GK18664-PA 1..691 2..704 2644 78.7 Plus
Dwil\GK11542-PA 835 GK11542-PA 198..530 142..470 605 38 Plus
Dwil\GK25746-PA 483 GK25746-PA 54..468 83..467 514 29.7 Plus
Dwil\GK14909-PA 878 GK14909-PA 543..873 136..468 371 28.9 Plus
Dwil\GK14159-PA 457 GK14159-PA 34..110 142..216 286 59.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10817-PA 703 GE10817-PA 1..703 2..704 3627 96.3 Plus
Dyak\GE26169-PA 543 GE26169-PA 200..532 142..470 599 37.8 Plus
Dyak\GE13549-PA 1059 GE13549-PA 716..1054 129..468 372 27.6 Plus
Dyak\GE16988-PA 509 GE16988-PA 77..180 124..218 317 53.8 Plus
Dyak\GE10907-PA 452 GE10907-PA 34..110 142..216 289 59.7 Plus

RE09535.hyp Sequence

Translation from 636 to 2750

> RE09535.hyp
MMKHPQDLSVTDDQQLMKVNKVEKMEQELHDPESESHIMHADALASAYPA
ASQPHSPIGLALSPNGGGLGLSNSSNQSSENFALCNGNGNAGSAGGGSAS
SGSNNNNSMFSPNNNLSGSGSGTNSSQQQLQQQQQQQSPTVCAICGDRAT
GKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR
KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQS
KAGAAMEPNINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQ
LDDQVALLRAHAGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSP
NLDISRIGARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEPHR
IKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQSITWQMIEQIQF
AKIFGVAHIDSLLQEMLLGGELADNPLPLSPPNQSNDYQSPTHTGNMEGG
NQVNSSLDSLATSGGPGSHSLDLEVQHIQALIEANSADDSFRAYAASTAA
AAAAAVSSSSSAPASVAPASISPPLNSPKSQHQHQQHATHQQQQESSYLD
MPVKHYNGSRSGPLPTQHSPQRMHPYQRAVASPVEVSSGGGGLGLRNPAD
ITLNEYNRSEGSSAEELLRRTPLKIRAPEMLTAPAGYGTEPCRMTLKQEP
ETGY*

RE09535.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Hnf4-PE 704 CG9310-PE 1..704 1..704 3662 100 Plus
Hnf4-PA 704 CG9310-PA 1..704 1..704 3662 100 Plus
Hnf4-PD 708 CG9310-PD 30..708 26..704 3503 99.4 Plus
Hnf4-PB 732 CG9310-PB 61..732 33..704 3494 100 Plus
Hnf4-PF 666 CG9310-PF 1..666 39..704 3464 100 Plus