Clone RE10106 Report

Search the DGRC for RE10106

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:101
Well:6
Vector:pFlc-1
Associated Gene/TranscriptCG3408-RA
Protein status:RE10106.pep: gold
Preliminary Size:996
Sequenced Size:1901

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3408 2002-01-01 Sim4 clustering to Release 2
CG3408 2002-02-22 Blastp of sequenced clone
CG3408 2003-01-01 Sim4 clustering to Release 3
CG3408 2008-04-29 Release 5.5 accounting
CG3408 2008-08-15 Release 5.9 accounting
CG3408 2008-12-18 5.12 accounting

Clone Sequence Records

RE10106.complete Sequence

1901 bp (1901 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089575

> RE10106.complete
GCCATTCTCACAAAACGAACGTTTGAAAATCACTTGAGATTCGGGTAAAC
ACAAACTCCAAGTGACGAGGAAGAACAGCAGCCGGAATAAATCGCGTATA
AATAGTGTGATAAGCAAGTGTCGCCGAAATGCCGAAACCCGGTGACAAGG
CGAAGGTGAAGGTGAACGTCAAGGAGCGGGTGGTGGACGAAACCTGCGAC
TTGAGTCTCTCCGAACTGAGCGAAATACCGGTGCGGGAGATCGCTTCGTT
CAAGCGCGTCACCGTTTTGGATCTCTCCAGCAATCGTCTGGTCAACTTGG
GAAAAAACTTTTCGATTCTCACACGCTTGGTGCGCCTGGACCTAAGCAAG
AACCAAATAAAATTCCTGCCCGAGGACTTTGGCCAGCTGGAGCAGTTGCG
CCACTTGGACTTGTACAACAATTGCTTGGAGCACCTGCCCATTAGCTTCG
GTCAGCTGCGTCGTTTGCGGTACTTAGACCTGAAGGGGAATCCACTGACG
CCCGCCTGGGAGAAGATTGTGGGCTGCTGCTCCACGCAAAAGGACTGCCA
GCAGGCGGCCAAGAATACAGTCAGCATCTGCGCCAACTACAAGCCGGAAT
TCATTGAACGCGAACGTTTGGCCGCCCAAGAGAGCCAGAAAATGGCCGGA
GCCGGGGATTCCAGTGCCAACGCCGTTCAAACGAATGGCGGCGCAGCTGG
TGGAAAGAAGTCGACGAAACCGAATAATAAGAAAGCCAAAGCTAAAAAAC
TCGCCGGTGGGGGAGACAATGAGCTGACAATCAAACCAGTAAATGCAGTG
GGATCAGGAGGATCAGGAGCAATCGCACTGGGATCCAAATCAACTCAAAA
GAACAATCAAAAGAAAAAGAACTCGAAAGGCGATTCCTGGTTGAATCTAC
TGTCGAGAGCTGCCCTATCGTCGCTGGTCAGCTTTCTGGTTCTCTTTATC
ATCAACTTGTTAATCATTTACATGATCATGTTCAAGAATCCGGACATCGC
CGACAAGCTGGTGGAGTATATACCACACCAGTATCGCGATTGGATCCTGA
CCAAAACGGAGATCTTTCGGCTGCGTGTTACCGACTGGATCTCGGAATTC
CGAACACCACCGGAGGAACACTGACGGTTCATTTATTTGAAGCCTTAGAG
CGCTGGGCTTCAAATGGAATAAATCGCTAAAAAAAAATCTCGGATGCATT
GCGCGTGTGTGGAGGCAAAATTCAAAATGAGATACGTGTTGACCACCTGA
ACGAGTTATACGACTGCTACTTTGATATACCATTATCTGTAATTTACTGC
CATTTATTTTGATAGACACTAAGCCCACTACGTCCATTGAAGGGAGATTT
TAAAATAAAAAAAAAACACACGTACTCCGCAACTTAAGAGGCCACTTTAA
AGACACCGAACTACACTCAATCACTCAGCTCAATCGAACTCAGATGAATC
TACAGCTAACCTAACCATAGCTCAAGCTCAACTCCATAGTAACTGAATGG
CAGTTCCAAACTAGCCAAAGCATAGAAACTACAGACACAGTCAGACCAGA
CATCCTCGTATTATTCACATCTATCAGGTCAAATCAGATATAATCGAATC
GATTCGAATCAACTCACCTACAAATAAAGTACTATAACCGTGTGCAATTC
CCATCTTATTTCTAATTCTTGCTCAAATTGTATTCATGTTAGCCCGACCA
TTTTACATTTGTAGATTTTAAATCGCATAGGTTTTATTGCAAAGGAAATG
TATACCATCATGAGTGGAATTTGCAGATAATCAAAATGAAATTCAAGCGG
TTTCATATGATTTATGCGAAATCGAAATAATTGAAGCGTAACAAAATATT
TGCAAGATTCTTTGAATAAAAACGTACATTTTAACAAAAAAAAAAAAAAA
A

RE10106.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-RA 2035 CG3408-RA 81..1968 1..1888 9440 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9498686..9500001 1885..570 6550 99.8 Minus
chr3L 24539361 chr3L 9500086..9500354 571..303 1345 100 Minus
chr3L 24539361 chr3L 9501203..9501445 243..1 1215 100 Minus
chr3L 24539361 chr3L 9500433..9500492 302..243 300 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:32:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9506815..9508133 1888..570 6595 100 Minus
3L 28110227 3L 9508218..9508486 571..303 1345 100 Minus
3L 28110227 3L 9509338..9509580 243..1 1215 100 Minus
3L 28110227 3L 9508565..9508624 302..243 300 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9499915..9501233 1888..570 6595 100 Minus
3L 28103327 3L 9501318..9501586 571..303 1345 100 Minus
3L 28103327 3L 9502438..9502680 243..1 1215 100 Minus
3L 28103327 3L 9501665..9501724 302..243 300 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:36:31 has no hits.

RE10106.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:37:36 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9500088..9500354 303..569 100 <- Minus
chr3L 9500433..9500492 243..302 100 <- Minus
chr3L 9498686..9500001 570..1885 96 <- Minus
chr3L 9501204..9501445 1..242 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:52:53 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 1..996 129..1124 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:40:18 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 1..996 129..1124 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:26:57 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 1..996 129..1124 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:56 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 1..996 129..1124 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:54 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 1..996 129..1124 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:05:13 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 1..1885 1..1885 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:40:18 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 1..1885 1..1885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:26:57 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 4..1888 1..1885 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:57 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 1..1885 1..1885 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:54 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
CG3408-RA 4..1888 1..1885 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:36 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9506818..9508133 570..1885 100 <- Minus
3L 9508220..9508486 303..569 100 <- Minus
3L 9508565..9508624 243..302 100 <- Minus
3L 9509339..9509580 1..242 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:36 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9506818..9508133 570..1885 100 <- Minus
3L 9508220..9508486 303..569 100 <- Minus
3L 9508565..9508624 243..302 100 <- Minus
3L 9509339..9509580 1..242 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:36 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9506818..9508133 570..1885 100 <- Minus
3L 9508220..9508486 303..569 100 <- Minus
3L 9508565..9508624 243..302 100 <- Minus
3L 9509339..9509580 1..242 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:26:57 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9499918..9501233 570..1885 100 <- Minus
arm_3L 9501320..9501586 303..569 100 <- Minus
arm_3L 9501665..9501724 243..302 100 <- Minus
arm_3L 9502439..9502680 1..242 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:44:11 Download gff for RE10106.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9499918..9501233 570..1885 100 <- Minus
3L 9501320..9501586 303..569 100 <- Minus
3L 9501665..9501724 243..302 100 <- Minus
3L 9502439..9502680 1..242 100   Minus

RE10106.hyp Sequence

Translation from 128 to 1123

> RE10106.hyp
MPKPGDKAKVKVNVKERVVDETCDLSLSELSEIPVREIASFKRVTVLDLS
SNRLVNLGKNFSILTRLVRLDLSKNQIKFLPEDFGQLEQLRHLDLYNNCL
EHLPISFGQLRRLRYLDLKGNPLTPAWEKIVGCCSTQKDCQQAAKNTVSI
CANYKPEFIERERLAAQESQKMAGAGDSSANAVQTNGGAAGGKKSTKPNN
KKAKAKKLAGGGDNELTIKPVNAVGSGGSGAIALGSKSTQKNNQKKKNSK
GDSWLNLLSRAALSSLVSFLVLFIINLLIIYMIMFKNPDIADKLVEYIPH
QYRDWILTKTEIFRLRVTDWISEFRTPPEEH*

RE10106.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-PA 331 CG3408-PA 1..331 1..331 1698 100 Plus
CG3408-PB 327 CG3408-PB 1..327 1..331 1665 98.8 Plus
CG3494-PB 240 CG3494-PB 42..141 25..121 163 39 Plus
CG3494-PA 240 CG3494-PA 42..141 25..121 163 39 Plus
twin-PB 545 CG31137-PB 51..133 41..123 163 45.8 Plus

RE10106.pep Sequence

Translation from 128 to 1123

> RE10106.pep
MPKPGDKAKVKVNVKERVVDETCDLSLSELSEIPVREIASFKRVTVLDLS
SNRLVNLGKNFSILTRLVRLDLSKNQIKFLPEDFGQLEQLRHLDLYNNCL
EHLPISFGQLRRLRYLDLKGNPLTPAWEKIVGCCSTQKDCQQAAKNTVSI
CANYKPEFIERERLAAQESQKMAGAGDSSANAVQTNGGAAGGKKSTKPNN
KKAKAKKLAGGGDNELTIKPVNAVGSGGSGAIALGSKSTQKNNQKKKNSK
GDSWLNLLSRAALSSLVSFLVLFIINLLIIYMIMFKNPDIADKLVEYIPH
QYRDWILTKTEIFRLRVTDWISEFRTPPEEH*

RE10106.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24656-PA 331 GF24656-PA 1..331 1..331 1289 78 Plus
Dana\GF16442-PA 1847 GF16442-PA 89..185 24..121 163 39.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14027-PA 330 GG14027-PA 1..330 1..331 1717 97.9 Plus
Dere\GG11485-PA 1855 GG11485-PA 89..185 24..121 163 39.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15147-PA 331 GH15147-PA 1..331 1..331 1172 69.3 Plus
Dgri\GH18723-PA 1864 GH18723-PA 89..185 24..121 162 39.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3408-PA 331 CG3408-PA 1..331 1..331 1698 100 Plus
CG3408-PB 327 CG3408-PB 1..327 1..331 1665 98.8 Plus
CG3494-PB 240 CG3494-PB 42..141 25..121 163 39 Plus
CG3494-PA 240 CG3494-PA 42..141 25..121 163 39 Plus
twin-PB 545 CG31137-PB 51..133 41..123 163 45.8 Plus
twin-PF 552 CG31137-PF 58..140 41..123 163 45.8 Plus
twin-PE 552 CG31137-PE 58..140 41..123 163 45.8 Plus
twin-PA 552 CG31137-PA 58..140 41..123 163 45.8 Plus
twin-PC 567 CG31137-PC 73..155 41..123 163 45.8 Plus
scrib-PC 1247 CG43398-PC 89..187 24..123 160 39 Plus
scrib-PI 1711 CG43398-PI 89..187 24..123 160 39 Plus
scrib-PP 1729 CG43398-PP 89..187 24..123 160 39 Plus
scrib-PB 1756 CG43398-PB 89..187 24..123 160 39 Plus
scrib-PA 1756 CG43398-PA 89..187 24..123 160 39 Plus
scrib-PU 1766 CG43398-PU 89..187 24..123 160 39 Plus
scrib-PD 1851 CG43398-PD 89..187 24..123 160 39 Plus
scrib-PH 1939 CG43398-PH 89..187 24..123 160 39 Plus
scrib-PR 1951 CG43398-PR 89..187 24..123 160 39 Plus
scrib-PK 2331 CG43398-PK 89..187 24..123 160 39 Plus
scrib-PJ 2426 CG43398-PJ 89..187 24..123 160 39 Plus
scrib-PT 2444 CG43398-PT 89..187 24..123 160 39 Plus
scrib-PM 2490 CG43398-PM 89..187 24..123 160 39 Plus
scrib-PO 2515 CG43398-PO 89..187 24..123 160 39 Plus
scrib-PN 2554 CG43398-PN 89..187 24..123 160 39 Plus
scrib-PQ 2577 CG43398-PQ 89..187 24..123 160 39 Plus
scrib-PL 2585 CG43398-PL 89..187 24..123 160 39 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12084-PA 331 GI12084-PA 1..331 1..331 1121 69.6 Plus
Dmoj\GI22874-PA 1865 GI22874-PA 89..185 24..121 163 39.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17961-PA 328 GL17961-PA 1..328 1..331 1183 69.8 Plus
Dper\GL23097-PA 1247 GL23097-PA 133..231 22..121 163 38 Plus
Dper\GL20131-PA 242 GL20131-PA 45..149 28..133 151 36.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28352-PA 328 GA28352-PA 1..328 1..331 1183 69.8 Plus
Dpse\GA16037-PD 565 GA16037-PD 62..154 35..123 161 44.1 Plus
Dpse\GA16037-PB 544 GA16037-PB 41..133 35..123 160 44.1 Plus
Dpse\GA16037-PC 551 GA16037-PC 48..140 35..123 160 44.1 Plus
Dpse\GA18897-PA 1889 GA18897-PA 89..185 24..121 159 38.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24862-PA 330 GM24862-PA 1..330 1..331 1706 97.6 Plus
Dsec\GM10328-PA 1851 GM10328-PA 89..185 24..121 164 39.8 Plus
Dsec\GM11861-PA 241 GM11861-PA 43..142 25..121 145 39 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12914-PA 330 GD12914-PA 1..330 1..331 1708 97.9 Plus
Dsim\GD21289-PA 2647 GD21289-PA 89..185 24..121 163 39.8 Plus
Dsim\GD18310-PA 168 GD18310-PA 48..147 35..130 158 42 Plus
Dsim\GD11859-PA 241 GD11859-PA 43..142 25..121 145 39 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13355-PA 301 GJ13355-PA 1..297 1..302 902 67.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10454-PA 323 GK10454-PA 1..323 1..331 1234 73.2 Plus
Dwil\GK13318-PA 1874 GK13318-PA 89..185 24..121 163 39.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21230-PA 328 GE21230-PA 1..328 1..331 1675 96.1 Plus
Dyak\GE23676-PA 1857 GE23676-PA 89..185 24..121 163 39.8 Plus