![]() | BDGP Sequence Production Resources |
Search the DGRC for RE10106
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 101 |
Well: | 6 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3408-RA |
Protein status: | RE10106.pep: gold |
Preliminary Size: | 996 |
Sequenced Size: | 1901 |
Gene | Date | Evidence |
---|---|---|
CG3408 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3408 | 2002-02-22 | Blastp of sequenced clone |
CG3408 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3408 | 2008-04-29 | Release 5.5 accounting |
CG3408 | 2008-08-15 | Release 5.9 accounting |
CG3408 | 2008-12-18 | 5.12 accounting |
1901 bp (1901 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089575
> RE10106.complete GCCATTCTCACAAAACGAACGTTTGAAAATCACTTGAGATTCGGGTAAAC ACAAACTCCAAGTGACGAGGAAGAACAGCAGCCGGAATAAATCGCGTATA AATAGTGTGATAAGCAAGTGTCGCCGAAATGCCGAAACCCGGTGACAAGG CGAAGGTGAAGGTGAACGTCAAGGAGCGGGTGGTGGACGAAACCTGCGAC TTGAGTCTCTCCGAACTGAGCGAAATACCGGTGCGGGAGATCGCTTCGTT CAAGCGCGTCACCGTTTTGGATCTCTCCAGCAATCGTCTGGTCAACTTGG GAAAAAACTTTTCGATTCTCACACGCTTGGTGCGCCTGGACCTAAGCAAG AACCAAATAAAATTCCTGCCCGAGGACTTTGGCCAGCTGGAGCAGTTGCG CCACTTGGACTTGTACAACAATTGCTTGGAGCACCTGCCCATTAGCTTCG GTCAGCTGCGTCGTTTGCGGTACTTAGACCTGAAGGGGAATCCACTGACG CCCGCCTGGGAGAAGATTGTGGGCTGCTGCTCCACGCAAAAGGACTGCCA GCAGGCGGCCAAGAATACAGTCAGCATCTGCGCCAACTACAAGCCGGAAT TCATTGAACGCGAACGTTTGGCCGCCCAAGAGAGCCAGAAAATGGCCGGA GCCGGGGATTCCAGTGCCAACGCCGTTCAAACGAATGGCGGCGCAGCTGG TGGAAAGAAGTCGACGAAACCGAATAATAAGAAAGCCAAAGCTAAAAAAC TCGCCGGTGGGGGAGACAATGAGCTGACAATCAAACCAGTAAATGCAGTG GGATCAGGAGGATCAGGAGCAATCGCACTGGGATCCAAATCAACTCAAAA GAACAATCAAAAGAAAAAGAACTCGAAAGGCGATTCCTGGTTGAATCTAC TGTCGAGAGCTGCCCTATCGTCGCTGGTCAGCTTTCTGGTTCTCTTTATC ATCAACTTGTTAATCATTTACATGATCATGTTCAAGAATCCGGACATCGC CGACAAGCTGGTGGAGTATATACCACACCAGTATCGCGATTGGATCCTGA CCAAAACGGAGATCTTTCGGCTGCGTGTTACCGACTGGATCTCGGAATTC CGAACACCACCGGAGGAACACTGACGGTTCATTTATTTGAAGCCTTAGAG CGCTGGGCTTCAAATGGAATAAATCGCTAAAAAAAAATCTCGGATGCATT GCGCGTGTGTGGAGGCAAAATTCAAAATGAGATACGTGTTGACCACCTGA ACGAGTTATACGACTGCTACTTTGATATACCATTATCTGTAATTTACTGC CATTTATTTTGATAGACACTAAGCCCACTACGTCCATTGAAGGGAGATTT TAAAATAAAAAAAAAACACACGTACTCCGCAACTTAAGAGGCCACTTTAA AGACACCGAACTACACTCAATCACTCAGCTCAATCGAACTCAGATGAATC TACAGCTAACCTAACCATAGCTCAAGCTCAACTCCATAGTAACTGAATGG CAGTTCCAAACTAGCCAAAGCATAGAAACTACAGACACAGTCAGACCAGA CATCCTCGTATTATTCACATCTATCAGGTCAAATCAGATATAATCGAATC GATTCGAATCAACTCACCTACAAATAAAGTACTATAACCGTGTGCAATTC CCATCTTATTTCTAATTCTTGCTCAAATTGTATTCATGTTAGCCCGACCA TTTTACATTTGTAGATTTTAAATCGCATAGGTTTTATTGCAAAGGAAATG TATACCATCATGAGTGGAATTTGCAGATAATCAAAATGAAATTCAAGCGG TTTCATATGATTTATGCGAAATCGAAATAATTGAAGCGTAACAAAATATT TGCAAGATTCTTTGAATAAAAACGTACATTTTAACAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3408-RA | 2035 | CG3408-RA | 81..1968 | 1..1888 | 9440 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 9498686..9500001 | 1885..570 | 6550 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 9500086..9500354 | 571..303 | 1345 | 100 | Minus |
chr3L | 24539361 | chr3L | 9501203..9501445 | 243..1 | 1215 | 100 | Minus |
chr3L | 24539361 | chr3L | 9500433..9500492 | 302..243 | 300 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 9506815..9508133 | 1888..570 | 6595 | 100 | Minus |
3L | 28110227 | 3L | 9508218..9508486 | 571..303 | 1345 | 100 | Minus |
3L | 28110227 | 3L | 9509338..9509580 | 243..1 | 1215 | 100 | Minus |
3L | 28110227 | 3L | 9508565..9508624 | 302..243 | 300 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 9499915..9501233 | 1888..570 | 6595 | 100 | Minus |
3L | 28103327 | 3L | 9501318..9501586 | 571..303 | 1345 | 100 | Minus |
3L | 28103327 | 3L | 9502438..9502680 | 243..1 | 1215 | 100 | Minus |
3L | 28103327 | 3L | 9501665..9501724 | 302..243 | 300 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 9500088..9500354 | 303..569 | 100 | <- | Minus |
chr3L | 9500433..9500492 | 243..302 | 100 | <- | Minus |
chr3L | 9498686..9500001 | 570..1885 | 96 | <- | Minus |
chr3L | 9501204..9501445 | 1..242 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3408-RA | 1..996 | 129..1124 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3408-RA | 1..996 | 129..1124 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3408-RA | 1..996 | 129..1124 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3408-RA | 1..996 | 129..1124 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3408-RA | 1..996 | 129..1124 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3408-RA | 1..1885 | 1..1885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3408-RA | 1..1885 | 1..1885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3408-RA | 4..1888 | 1..1885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3408-RA | 1..1885 | 1..1885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3408-RA | 4..1888 | 1..1885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9506818..9508133 | 570..1885 | 100 | <- | Minus |
3L | 9508220..9508486 | 303..569 | 100 | <- | Minus |
3L | 9508565..9508624 | 243..302 | 100 | <- | Minus |
3L | 9509339..9509580 | 1..242 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9506818..9508133 | 570..1885 | 100 | <- | Minus |
3L | 9508220..9508486 | 303..569 | 100 | <- | Minus |
3L | 9508565..9508624 | 243..302 | 100 | <- | Minus |
3L | 9509339..9509580 | 1..242 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9506818..9508133 | 570..1885 | 100 | <- | Minus |
3L | 9508220..9508486 | 303..569 | 100 | <- | Minus |
3L | 9508565..9508624 | 243..302 | 100 | <- | Minus |
3L | 9509339..9509580 | 1..242 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 9499918..9501233 | 570..1885 | 100 | <- | Minus |
arm_3L | 9501320..9501586 | 303..569 | 100 | <- | Minus |
arm_3L | 9501665..9501724 | 243..302 | 100 | <- | Minus |
arm_3L | 9502439..9502680 | 1..242 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 9499918..9501233 | 570..1885 | 100 | <- | Minus |
3L | 9501320..9501586 | 303..569 | 100 | <- | Minus |
3L | 9501665..9501724 | 243..302 | 100 | <- | Minus |
3L | 9502439..9502680 | 1..242 | 100 | Minus |
Translation from 128 to 1123
> RE10106.hyp MPKPGDKAKVKVNVKERVVDETCDLSLSELSEIPVREIASFKRVTVLDLS SNRLVNLGKNFSILTRLVRLDLSKNQIKFLPEDFGQLEQLRHLDLYNNCL EHLPISFGQLRRLRYLDLKGNPLTPAWEKIVGCCSTQKDCQQAAKNTVSI CANYKPEFIERERLAAQESQKMAGAGDSSANAVQTNGGAAGGKKSTKPNN KKAKAKKLAGGGDNELTIKPVNAVGSGGSGAIALGSKSTQKNNQKKKNSK GDSWLNLLSRAALSSLVSFLVLFIINLLIIYMIMFKNPDIADKLVEYIPH QYRDWILTKTEIFRLRVTDWISEFRTPPEEH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3408-PA | 331 | CG3408-PA | 1..331 | 1..331 | 1698 | 100 | Plus |
CG3408-PB | 327 | CG3408-PB | 1..327 | 1..331 | 1665 | 98.8 | Plus |
CG3494-PB | 240 | CG3494-PB | 42..141 | 25..121 | 163 | 39 | Plus |
CG3494-PA | 240 | CG3494-PA | 42..141 | 25..121 | 163 | 39 | Plus |
twin-PB | 545 | CG31137-PB | 51..133 | 41..123 | 163 | 45.8 | Plus |
Translation from 128 to 1123
> RE10106.pep MPKPGDKAKVKVNVKERVVDETCDLSLSELSEIPVREIASFKRVTVLDLS SNRLVNLGKNFSILTRLVRLDLSKNQIKFLPEDFGQLEQLRHLDLYNNCL EHLPISFGQLRRLRYLDLKGNPLTPAWEKIVGCCSTQKDCQQAAKNTVSI CANYKPEFIERERLAAQESQKMAGAGDSSANAVQTNGGAAGGKKSTKPNN KKAKAKKLAGGGDNELTIKPVNAVGSGGSGAIALGSKSTQKNNQKKKNSK GDSWLNLLSRAALSSLVSFLVLFIINLLIIYMIMFKNPDIADKLVEYIPH QYRDWILTKTEIFRLRVTDWISEFRTPPEEH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24656-PA | 331 | GF24656-PA | 1..331 | 1..331 | 1289 | 78 | Plus |
Dana\GF16442-PA | 1847 | GF16442-PA | 89..185 | 24..121 | 163 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14027-PA | 330 | GG14027-PA | 1..330 | 1..331 | 1717 | 97.9 | Plus |
Dere\GG11485-PA | 1855 | GG11485-PA | 89..185 | 24..121 | 163 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15147-PA | 331 | GH15147-PA | 1..331 | 1..331 | 1172 | 69.3 | Plus |
Dgri\GH18723-PA | 1864 | GH18723-PA | 89..185 | 24..121 | 162 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3408-PA | 331 | CG3408-PA | 1..331 | 1..331 | 1698 | 100 | Plus |
CG3408-PB | 327 | CG3408-PB | 1..327 | 1..331 | 1665 | 98.8 | Plus |
CG3494-PB | 240 | CG3494-PB | 42..141 | 25..121 | 163 | 39 | Plus |
CG3494-PA | 240 | CG3494-PA | 42..141 | 25..121 | 163 | 39 | Plus |
twin-PB | 545 | CG31137-PB | 51..133 | 41..123 | 163 | 45.8 | Plus |
twin-PF | 552 | CG31137-PF | 58..140 | 41..123 | 163 | 45.8 | Plus |
twin-PE | 552 | CG31137-PE | 58..140 | 41..123 | 163 | 45.8 | Plus |
twin-PA | 552 | CG31137-PA | 58..140 | 41..123 | 163 | 45.8 | Plus |
twin-PC | 567 | CG31137-PC | 73..155 | 41..123 | 163 | 45.8 | Plus |
scrib-PC | 1247 | CG43398-PC | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PI | 1711 | CG43398-PI | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PP | 1729 | CG43398-PP | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PB | 1756 | CG43398-PB | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PA | 1756 | CG43398-PA | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PU | 1766 | CG43398-PU | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PD | 1851 | CG43398-PD | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PH | 1939 | CG43398-PH | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PR | 1951 | CG43398-PR | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PK | 2331 | CG43398-PK | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PJ | 2426 | CG43398-PJ | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PT | 2444 | CG43398-PT | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PM | 2490 | CG43398-PM | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PO | 2515 | CG43398-PO | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PN | 2554 | CG43398-PN | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PQ | 2577 | CG43398-PQ | 89..187 | 24..123 | 160 | 39 | Plus |
scrib-PL | 2585 | CG43398-PL | 89..187 | 24..123 | 160 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12084-PA | 331 | GI12084-PA | 1..331 | 1..331 | 1121 | 69.6 | Plus |
Dmoj\GI22874-PA | 1865 | GI22874-PA | 89..185 | 24..121 | 163 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17961-PA | 328 | GL17961-PA | 1..328 | 1..331 | 1183 | 69.8 | Plus |
Dper\GL23097-PA | 1247 | GL23097-PA | 133..231 | 22..121 | 163 | 38 | Plus |
Dper\GL20131-PA | 242 | GL20131-PA | 45..149 | 28..133 | 151 | 36.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28352-PA | 328 | GA28352-PA | 1..328 | 1..331 | 1183 | 69.8 | Plus |
Dpse\GA16037-PD | 565 | GA16037-PD | 62..154 | 35..123 | 161 | 44.1 | Plus |
Dpse\GA16037-PB | 544 | GA16037-PB | 41..133 | 35..123 | 160 | 44.1 | Plus |
Dpse\GA16037-PC | 551 | GA16037-PC | 48..140 | 35..123 | 160 | 44.1 | Plus |
Dpse\GA18897-PA | 1889 | GA18897-PA | 89..185 | 24..121 | 159 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24862-PA | 330 | GM24862-PA | 1..330 | 1..331 | 1706 | 97.6 | Plus |
Dsec\GM10328-PA | 1851 | GM10328-PA | 89..185 | 24..121 | 164 | 39.8 | Plus |
Dsec\GM11861-PA | 241 | GM11861-PA | 43..142 | 25..121 | 145 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12914-PA | 330 | GD12914-PA | 1..330 | 1..331 | 1708 | 97.9 | Plus |
Dsim\GD21289-PA | 2647 | GD21289-PA | 89..185 | 24..121 | 163 | 39.8 | Plus |
Dsim\GD18310-PA | 168 | GD18310-PA | 48..147 | 35..130 | 158 | 42 | Plus |
Dsim\GD11859-PA | 241 | GD11859-PA | 43..142 | 25..121 | 145 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13355-PA | 301 | GJ13355-PA | 1..297 | 1..302 | 902 | 67.3 | Plus |