Clone RE10132 Report

Search the DGRC for RE10132

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:101
Well:32
Vector:pFlc-1
Associated Gene/TranscriptCCHa2-RA
Protein status:RE10132.pep: gold
Preliminary Size:357
Sequenced Size:1177

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14375 2002-01-01 Sim4 clustering to Release 2
CG14375 2002-02-22 Blastp of sequenced clone
CG14375 2003-01-01 Sim4 clustering to Release 3
CG14375 2008-04-29 Release 5.5 accounting
CG14375 2008-08-15 Release 5.9 accounting
CG14375 2008-12-18 5.12 accounting

Clone Sequence Records

RE10132.complete Sequence

1177 bp (1177 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089576

> RE10132.complete
ACAGAACTCCGGCTTGCAGTCAAACAGCAACAGCAGCAAACCAGCGAAAC
CATCCGGCAAGGACGAGGACGAGGACCAGGACGAAAGACAAGGACATTTG
TTTCGGACAGCAGCCCACCAGCCAAGTGCAAGTATCATGAAATCCACCAT
ATCTTTGCTACTGGTCGTTATCTGCACCGTGGTCCTGGCCGCGCAACAGA
GCCAAGCGAAAAAGGGATGCCAGGCCTACGGTCATGTGTGCTACGGTGGT
CATGGCAAGCGCTCTCTGAGCCCCGGATCCGGGTCTGGAACGGGAGTGGG
CGGGGGAATGGGCGAGGCAGCCTCCGGGGGGCAGGAACCGGACTATGTGC
GTCCGAATGGCCTACTGCCCATGATGGCGCCAAATGAACAGGTGCCGCTC
GAGGGCGACTTTAATGACTATCCCGCCCGTCAGGTGCTTTACAAAATCAT
GAAATCATGGTTTAACCGACCTCGCCGACCCGCCTCTCGCCTGGGTGAAC
TTGATTATCCCTTGGCCAATTCCGCCGAATTGAATGGCGTGAACTAAGGC
CGGAAAAGTTATCAATACAGAAATATCCACAACGTACATTAAAAACCGGA
AATAAGCCTCAAAAACAAGAGCAACAACATCAAGAGATACAGTAACAGCA
ACAACAACAACATCAGCGACAACACATGAATTACTTATGAATGTTAATTA
CTTTCGCAACTTGTATAAAATGTTTGATAAATGTCTACACATACCAGGCA
GTCAATTTTTATGCTAATTGCATAAGCATCGAACACATTAAAAAAAAACC
CAACTGAAATTTTTAGGGGCTGGTAAGGATTTCAGTGTCAAAAAAAAAAA
GGAGCAGACGACGAAAAATAAATCGAAGAAAACGGCAAAGACAGCGTGTT
TCACTGTTCATATGTTAAATACATACGTATATTTTATTTATGTTTATTTA
CGAAGAAAGCGAAAGACTATATGTAGTTGTAATTTTATTTAACATACAAA
ATATATACATATTAACTTTGTAAACTGTGTATGTTAATCATTATAGGTGT
ATATGTATATTACGGCTGCGCAACACTAACAAATTGTTCCCAACAGTTTT
ATTTATAAAGAGGTGCTTGTTTAAATATATAATAAAATGTGCTACAAAAG
CATCCAAATTCAAAAAAAAAAAAAAAA

RE10132.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14375-RA 1188 CG14375-RA 28..1188 3..1163 5790 99.9 Plus
CG14375.a 1101 CG14375.a 70..1101 132..1163 5145 99.9 Plus
CG14375.b 1293 CG14375.b 262..1293 132..1163 5145 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9214252..9214952 1161..460 3430 99.6 Minus
chr3R 27901430 chr3R 9215240..9215487 460..213 1240 100 Minus
chr3R 27901430 chr3R 9220269..9220400 134..3 645 99.2 Minus
chr3R 27901430 chr3R 9217066..9217146 212..132 375 97.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:32:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13389057..13389760 1163..460 3505 99.9 Minus
3R 32079331 3R 13390048..13390295 460..213 1240 100 Minus
3R 32079331 3R 13395058..13395189 134..3 660 100 Minus
3R 32079331 3R 13391865..13391945 212..132 405 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13129888..13130591 1163..460 3505 99.8 Minus
3R 31820162 3R 13130879..13131126 460..213 1240 100 Minus
3R 31820162 3R 13135889..13136020 134..3 660 100 Minus
3R 31820162 3R 13132696..13132776 212..132 405 100 Minus
Blast to na_te.dros performed 2019-03-16 02:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 6311..6377 936..1011 116 68.4 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 626..716 915..1009 113 62.1 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 2616..2675 741..682 111 65 Minus

RE10132.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:50:40 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9214252..9214729 683..1161 99 == Minus
chr3R 9214799..9214951 461..613 100 <- Minus
chr3R 9215240..9215487 213..460 100 <- Minus
chr3R 9217066..9217146 132..212 97 <- Minus
chr3R 9220272..9220401 1..131 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:52:55 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
CG14375-RA 1..411 137..547 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:40:21 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
CG14375-RC 1..411 137..547 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:51 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 1..411 137..547 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:57 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
CG14375-RA 1..411 137..547 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:22:49 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 1..411 137..547 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:05:15 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
CG14375-RA 2..1160 3..1161 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:40:21 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
CG14375-RA 2..1160 3..1161 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:51 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 6..1167 1..1161 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:58 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
CG14375-RA 2..1160 3..1161 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:22:49 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 6..1167 1..1161 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:40 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13389059..13389759 461..1161 99 <- Minus
3R 13390048..13390295 213..460 100 <- Minus
3R 13391865..13391945 132..212 100 <- Minus
3R 13395061..13395190 1..131 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:40 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13389059..13389759 461..1161 99 <- Minus
3R 13390048..13390295 213..460 100 <- Minus
3R 13391865..13391945 132..212 100 <- Minus
3R 13395061..13395190 1..131 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:50:40 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13389059..13389759 461..1161 99 <- Minus
3R 13390048..13390295 213..460 100 <- Minus
3R 13391865..13391945 132..212 100 <- Minus
3R 13395061..13395190 1..131 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:51 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9214781..9215481 461..1161 99 <- Minus
arm_3R 9215770..9216017 213..460 100 <- Minus
arm_3R 9217587..9217667 132..212 100 <- Minus
arm_3R 9220783..9220912 1..131 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:44:12 Download gff for RE10132.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13129890..13130590 461..1161 99 <- Minus
3R 13130879..13131126 213..460 100 <- Minus
3R 13132696..13132776 132..212 100 <- Minus
3R 13135892..13136021 1..131 99   Minus

RE10132.hyp Sequence

Translation from 0 to 546

> RE10132.hyp
KNSGLQSNSNSSKPAKPSGKDEDEDQDERQGHLFRTAAHQPSASIMKSTI
SLLLVVICTVVLAAQQSQAKKGCQAYGHVCYGGHGKRSLSPGSGSGTGVG
GGMGEAASGGQEPDYVRPNGLLPMMAPNEQVPLEGDFNDYPARQVLYKIM
KSWFNRPRRPASRLGELDYPLANSAELNGVN*

RE10132.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
CCHa2-PC 136 CG14375-PC 1..136 46..181 720 100 Plus
CCHa2-PB 136 CG14375-PB 1..136 46..181 720 100 Plus
CCHa2-PA 136 CG14375-PA 1..136 46..181 720 100 Plus

RE10132.pep Sequence

Translation from 136 to 546

> RE10132.pep
MKSTISLLLVVICTVVLAAQQSQAKKGCQAYGHVCYGGHGKRSLSPGSGS
GTGVGGGMGEAASGGQEPDYVRPNGLLPMMAPNEQVPLEGDFNDYPARQV
LYKIMKSWFNRPRRPASRLGELDYPLANSAELNGVN*

RE10132.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17384-PA 133 GF17384-PA 1..133 1..136 570 80.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17056-PA 134 GG17056-PA 1..134 1..136 650 92.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18546-PA 140 GH18546-PA 1..128 1..131 422 67.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
CCHa2-PC 136 CG14375-PC 1..136 1..136 720 100 Plus
CCHa2-PB 136 CG14375-PB 1..136 1..136 720 100 Plus
CCHa2-PA 136 CG14375-PA 1..136 1..136 720 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23245-PA 139 GI23245-PA 1..127 1..131 478 73.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23065-PA 136 GL23065-PA 1..125 1..132 514 76.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12941-PA 136 GA12941-PA 1..125 1..132 512 74.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25941-PA 136 GM25941-PA 1..136 1..136 697 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20502-PA 136 GD20502-PA 1..136 1..136 690 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10742-PA 141 GJ10742-PA 1..129 1..131 497 75.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13348-PA 135 GK13348-PA 1..127 1..132 479 72.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24445-PA 134 GE24445-PA 1..134 1..136 657 93.4 Plus