BDGP Sequence Production Resources |
Search the DGRC for RE10132
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 101 |
Well: | 32 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CCHa2-RA |
Protein status: | RE10132.pep: gold |
Preliminary Size: | 357 |
Sequenced Size: | 1177 |
Gene | Date | Evidence |
---|---|---|
CG14375 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14375 | 2002-02-22 | Blastp of sequenced clone |
CG14375 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14375 | 2008-04-29 | Release 5.5 accounting |
CG14375 | 2008-08-15 | Release 5.9 accounting |
CG14375 | 2008-12-18 | 5.12 accounting |
1177 bp (1177 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089576
> RE10132.complete ACAGAACTCCGGCTTGCAGTCAAACAGCAACAGCAGCAAACCAGCGAAAC CATCCGGCAAGGACGAGGACGAGGACCAGGACGAAAGACAAGGACATTTG TTTCGGACAGCAGCCCACCAGCCAAGTGCAAGTATCATGAAATCCACCAT ATCTTTGCTACTGGTCGTTATCTGCACCGTGGTCCTGGCCGCGCAACAGA GCCAAGCGAAAAAGGGATGCCAGGCCTACGGTCATGTGTGCTACGGTGGT CATGGCAAGCGCTCTCTGAGCCCCGGATCCGGGTCTGGAACGGGAGTGGG CGGGGGAATGGGCGAGGCAGCCTCCGGGGGGCAGGAACCGGACTATGTGC GTCCGAATGGCCTACTGCCCATGATGGCGCCAAATGAACAGGTGCCGCTC GAGGGCGACTTTAATGACTATCCCGCCCGTCAGGTGCTTTACAAAATCAT GAAATCATGGTTTAACCGACCTCGCCGACCCGCCTCTCGCCTGGGTGAAC TTGATTATCCCTTGGCCAATTCCGCCGAATTGAATGGCGTGAACTAAGGC CGGAAAAGTTATCAATACAGAAATATCCACAACGTACATTAAAAACCGGA AATAAGCCTCAAAAACAAGAGCAACAACATCAAGAGATACAGTAACAGCA ACAACAACAACATCAGCGACAACACATGAATTACTTATGAATGTTAATTA CTTTCGCAACTTGTATAAAATGTTTGATAAATGTCTACACATACCAGGCA GTCAATTTTTATGCTAATTGCATAAGCATCGAACACATTAAAAAAAAACC CAACTGAAATTTTTAGGGGCTGGTAAGGATTTCAGTGTCAAAAAAAAAAA GGAGCAGACGACGAAAAATAAATCGAAGAAAACGGCAAAGACAGCGTGTT TCACTGTTCATATGTTAAATACATACGTATATTTTATTTATGTTTATTTA CGAAGAAAGCGAAAGACTATATGTAGTTGTAATTTTATTTAACATACAAA ATATATACATATTAACTTTGTAAACTGTGTATGTTAATCATTATAGGTGT ATATGTATATTACGGCTGCGCAACACTAACAAATTGTTCCCAACAGTTTT ATTTATAAAGAGGTGCTTGTTTAAATATATAATAAAATGTGCTACAAAAG CATCCAAATTCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14375-RA | 1188 | CG14375-RA | 28..1188 | 3..1163 | 5790 | 99.9 | Plus |
CG14375.a | 1101 | CG14375.a | 70..1101 | 132..1163 | 5145 | 99.9 | Plus |
CG14375.b | 1293 | CG14375.b | 262..1293 | 132..1163 | 5145 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 9214252..9214952 | 1161..460 | 3430 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 9215240..9215487 | 460..213 | 1240 | 100 | Minus |
chr3R | 27901430 | chr3R | 9220269..9220400 | 134..3 | 645 | 99.2 | Minus |
chr3R | 27901430 | chr3R | 9217066..9217146 | 212..132 | 375 | 97.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 13389057..13389760 | 1163..460 | 3505 | 99.9 | Minus |
3R | 32079331 | 3R | 13390048..13390295 | 460..213 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 13395058..13395189 | 134..3 | 660 | 100 | Minus |
3R | 32079331 | 3R | 13391865..13391945 | 212..132 | 405 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 13129888..13130591 | 1163..460 | 3505 | 99.8 | Minus |
3R | 31820162 | 3R | 13130879..13131126 | 460..213 | 1240 | 100 | Minus |
3R | 31820162 | 3R | 13135889..13136020 | 134..3 | 660 | 100 | Minus |
3R | 31820162 | 3R | 13132696..13132776 | 212..132 | 405 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
accord | 7404 | accord ACCORD 7404bp | 6311..6377 | 936..1011 | 116 | 68.4 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 626..716 | 915..1009 | 113 | 62.1 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 2616..2675 | 741..682 | 111 | 65 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 9214252..9214729 | 683..1161 | 99 | == | Minus |
chr3R | 9214799..9214951 | 461..613 | 100 | <- | Minus |
chr3R | 9215240..9215487 | 213..460 | 100 | <- | Minus |
chr3R | 9217066..9217146 | 132..212 | 97 | <- | Minus |
chr3R | 9220272..9220401 | 1..131 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14375-RA | 1..411 | 137..547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14375-RC | 1..411 | 137..547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CCHa2-RA | 1..411 | 137..547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14375-RA | 1..411 | 137..547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CCHa2-RA | 1..411 | 137..547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14375-RA | 2..1160 | 3..1161 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14375-RA | 2..1160 | 3..1161 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CCHa2-RA | 6..1167 | 1..1161 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14375-RA | 2..1160 | 3..1161 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CCHa2-RA | 6..1167 | 1..1161 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13389059..13389759 | 461..1161 | 99 | <- | Minus |
3R | 13390048..13390295 | 213..460 | 100 | <- | Minus |
3R | 13391865..13391945 | 132..212 | 100 | <- | Minus |
3R | 13395061..13395190 | 1..131 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13389059..13389759 | 461..1161 | 99 | <- | Minus |
3R | 13390048..13390295 | 213..460 | 100 | <- | Minus |
3R | 13391865..13391945 | 132..212 | 100 | <- | Minus |
3R | 13395061..13395190 | 1..131 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13389059..13389759 | 461..1161 | 99 | <- | Minus |
3R | 13390048..13390295 | 213..460 | 100 | <- | Minus |
3R | 13391865..13391945 | 132..212 | 100 | <- | Minus |
3R | 13395061..13395190 | 1..131 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 9214781..9215481 | 461..1161 | 99 | <- | Minus |
arm_3R | 9215770..9216017 | 213..460 | 100 | <- | Minus |
arm_3R | 9217587..9217667 | 132..212 | 100 | <- | Minus |
arm_3R | 9220783..9220912 | 1..131 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13129890..13130590 | 461..1161 | 99 | <- | Minus |
3R | 13130879..13131126 | 213..460 | 100 | <- | Minus |
3R | 13132696..13132776 | 132..212 | 100 | <- | Minus |
3R | 13135892..13136021 | 1..131 | 99 | Minus |
Translation from 0 to 546
> RE10132.hyp KNSGLQSNSNSSKPAKPSGKDEDEDQDERQGHLFRTAAHQPSASIMKSTI SLLLVVICTVVLAAQQSQAKKGCQAYGHVCYGGHGKRSLSPGSGSGTGVG GGMGEAASGGQEPDYVRPNGLLPMMAPNEQVPLEGDFNDYPARQVLYKIM KSWFNRPRRPASRLGELDYPLANSAELNGVN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CCHa2-PC | 136 | CG14375-PC | 1..136 | 46..181 | 720 | 100 | Plus |
CCHa2-PB | 136 | CG14375-PB | 1..136 | 46..181 | 720 | 100 | Plus |
CCHa2-PA | 136 | CG14375-PA | 1..136 | 46..181 | 720 | 100 | Plus |
Translation from 136 to 546
> RE10132.pep MKSTISLLLVVICTVVLAAQQSQAKKGCQAYGHVCYGGHGKRSLSPGSGS GTGVGGGMGEAASGGQEPDYVRPNGLLPMMAPNEQVPLEGDFNDYPARQV LYKIMKSWFNRPRRPASRLGELDYPLANSAELNGVN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17384-PA | 133 | GF17384-PA | 1..133 | 1..136 | 570 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17056-PA | 134 | GG17056-PA | 1..134 | 1..136 | 650 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18546-PA | 140 | GH18546-PA | 1..128 | 1..131 | 422 | 67.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CCHa2-PC | 136 | CG14375-PC | 1..136 | 1..136 | 720 | 100 | Plus |
CCHa2-PB | 136 | CG14375-PB | 1..136 | 1..136 | 720 | 100 | Plus |
CCHa2-PA | 136 | CG14375-PA | 1..136 | 1..136 | 720 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23245-PA | 139 | GI23245-PA | 1..127 | 1..131 | 478 | 73.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23065-PA | 136 | GL23065-PA | 1..125 | 1..132 | 514 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12941-PA | 136 | GA12941-PA | 1..125 | 1..132 | 512 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25941-PA | 136 | GM25941-PA | 1..136 | 1..136 | 697 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20502-PA | 136 | GD20502-PA | 1..136 | 1..136 | 690 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10742-PA | 141 | GJ10742-PA | 1..129 | 1..131 | 497 | 75.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13348-PA | 135 | GK13348-PA | 1..127 | 1..132 | 479 | 72.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24445-PA | 134 | GE24445-PA | 1..134 | 1..136 | 657 | 93.4 | Plus |