Clone RE10231 Report

Search the DGRC for RE10231

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:102
Well:31
Vector:pFlc-1
Associated Gene/TranscriptCG4658-RA
Protein status:RE10231.pep: gold
Preliminary Size:1996
Sequenced Size:2247

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4658 2002-01-01 Sim4 clustering to Release 2
CG4658 2003-01-01 Sim4 clustering to Release 3
CG4658 2003-02-20 Blastp of sequenced clone
CG4658 2008-04-29 Release 5.5 accounting
CG4658 2008-08-15 Release 5.9 accounting
CG4658 2008-12-18 5.12 accounting

Clone Sequence Records

RE10231.complete Sequence

2247 bp (2247 high quality bases) assembled on 2003-02-20

GenBank Submission: BT004863

> RE10231.complete
AATCAGCATTAATTTGCAACTCCAGCACGGTCACATTCGATTGGTTTTGC
GACGCGGCGCAGTTGTTTCTTTGGCCAAAACTTCCCTGCACCTGTTGCGC
CTCGCCAATTTGTTTTCAGTGCAAACCTGCGTTTGGCCTTTTTTATGCCC
TTTCGTTGTACGTTTCCACTGCCCCAAATTAATTGCGTCGAAACATCACC
AAGATGGGCAACACGAGTTCCAAGGGCGAGTCGGACGCCAGTGAGCCACC
CCTGGAGGGAGGCAAGCCGTACAAGCAGCATCAGCAGCACAAGTCCAGTG
ATGCTTCCCACAACGGAGTCTCTGACGTGGGCGGCAGCCACAACAATCTA
AAGGTGACGCAGGCGCAGGGCTCGATGACCAGGTCGGCTTCTGGCGCGGA
TGTCACCGAGAAGTACCTCACCCAGCTGGTGCCGGTGGAGAAGCTAGCCG
AGATTCTCAGGGAGCAGACGTCGTCCAAACTGGGCATTAATGGCATTGTG
GCAGATGTCTTTGTGTCACAAGTCTTTCCGCAGTACGCCGACCTGGGACA
GCGGCTGTTCAACCTGATGCACTCCAACTCCAAGGCCACAACGAAACATC
TGGGCGCCGTTGCTTTCCGGCAACAGTGCGAACGCTTTTTGGGCATCATG
GATGACTCGAAGACGCTGGAGTGCTACATTAAGATGTACGCCCAGGAGGA
GAATCCGGACCAAATTGACAAGACGGGAGTGACGCGGTTGCTCCACATCT
GCTACACCATTGCCATGCAGCACTCGGGCAACGCCGTGCTGTGCCCGGCC
ATCAACCGCACGTTCGGTTCGGTGACCAAGTCCATTTTCCTGTGCCACGA
CAGTATGAGTCTGGGCTACGTTTGCCGCTGGTTCGAGCAGAACCTGATGC
GGCTGGTGCTCCTCGTGCACAAGTACTGTGTGCACACTTTGTCAACCGCT
TACCGTGGTCTAGAGCAGCAGAATCAGTCATGCGGCATTGAGTTGCAGAC
GCCGGTGCTTGAGCAACGTAATCCCTTCACAGATACCACCGACTTTAGTG
GCGGTAGCACGAGGGAGATGGACTCGCTGATGCCGCTTTCGCAAGCCTGG
CTGCTGGCTGGAGCTCTGCCGCCACTCTACTCCAAGCCCCAAACTGTGAC
ACCGCCGGCCACAAAGGGAAACAACAACGTTAGCGCGTCCACAGCGGTAC
AGATTTTCAAGGACAAGCTGTCGATGATGCCGTCACACTGGACACTGCTG
TACAACTCCAATGAGCATGGCGTGGGAGCCAACCGGTTTCTGCACCACGT
CCTCGGCTATCGGGGTCCAACACTGGTCCTGCTCCATACCAAGGATGAAC
AGACGTATTGCGTGGCCTCACCCAGTGAGTGGAAGGAAACGCATCTGTTT
GTGGGCGGCGAGGGCAGCTGTGTTATCCAGCTGCTGCCCAAGTTTGTGAT
ACTGGAAAAAAAGCCCAACATTCTTTACCTAAACACCAGCATACGCGGCT
ATCCGAAGGGCTTACGTGCCGGCGCCGATCCGCGAAAACCCATTATAGCA
GTCGATGAGCATTTCGAGAATATTGACTGCAAGGGACTGGCGGCTGGACT
CATGTCCATAGAGGTGTGGGGCTGCGGCGACAAATCATCACGCGAAGTGC
AATTGGACATCAAGAAGTGGCAAATCAAGGAGGCCGAACGGCAGCGGACA
GTGAAGCTCACGGCCGCCGACTGGATGGACCATCCGGATCGATATCTCCT
CGAGCTGGGCGGCAGGCAGAACTACAACAATTGATCGCGACTGCTGCGCA
TATATGTATTCTAAAAGCAATGGATGGGGAATGCCATTCGAAATGAGGGG
CATGCCACATTGAAATTTACTGGGATTTGCTATAGTTATGCACTCGCAGC
ACGAGAAGTAATCACTGGACTGAATTTGTTTTTAATTGATGTTGATTGAT
ATTCGGTTTACTTGTTTTTCTTTCTATTATCAGTGTTTAGTACTCGATTT
GATTTATGTATGTTCGTAACGAGAATTCCGTGAATGCCTTTAAATGTACT
TCGGTCTACTTGTGTATCCATGTATATGTCACACATTGTCTTCGTTTTCG
TCAACTTTTTCCTTTAGGTCTTCTGTTATGTTCCGTATCTTTGTTCAAAA
ATGTAAAAAAGCAAGTATTATGAAAAGACATAGGATTCGAAGTGCTTAAA
CAAATATTTCAATAAATGTTACAAATGAAATGAAAAAAAAAAAAAAA

RE10231.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-RC 2234 CG4658-RC 1..2234 1..2234 11170 100 Plus
CG4658-RA 2333 CG4658-RA 142..2333 43..2234 10960 100 Plus
CG4658-RB 2260 CG4658-RB 69..2260 43..2234 10960 100 Plus
CG4658-RA 2333 CG4658-RA 1..47 1..47 235 100 Plus
CG4658-RB 2260 CG4658-RB 1..43 1..43 215 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9956890..9957818 515..1443 4645 100 Plus
chr2L 23010047 chr2L 9958479..9959099 1612..2232 3075 99.7 Plus
chr2L 23010047 chr2L 9956359..9956831 43..515 2365 100 Plus
chr2L 23010047 chr2L 9957871..9958044 1442..1615 870 100 Plus
chr2L 23010047 chr2L 9956218..9956264 1..47 235 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:32:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9957959..9958887 515..1443 4645 100 Plus
2L 23513712 2L 9959548..9960170 1612..2234 3115 100 Plus
2L 23513712 2L 9957428..9957900 43..515 2365 100 Plus
2L 23513712 2L 9958940..9959113 1442..1615 870 100 Plus
2L 23513712 2L 9957287..9957333 1..47 235 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9957959..9958887 515..1443 4645 100 Plus
2L 23513712 2L 9959548..9960170 1612..2234 3115 100 Plus
2L 23513712 2L 9957428..9957900 43..515 2365 100 Plus
2L 23513712 2L 9958940..9959113 1442..1615 870 100 Plus
2L 23513712 2L 9957287..9957333 1..47 235 100 Plus
Blast to na_te.dros performed 2019-03-16 02:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3759..3811 1977..1924 132 76.4 Minus
TAHRE 10463 TAHRE OSV 10463bp 9087..9147 1987..1925 121 70.3 Minus
TAHRE 10463 TAHRE OSV 10463bp 7683..7741 1988..1924 120 73.8 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 2717..2813 2023..1927 115 63 Minus
TART-C 11124 TART-C TARTC 11124bp 4169..4265 2023..1927 115 63 Minus

RE10231.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:54:24 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9956218..9956260 1..43 100 -> Plus
chr2L 9956360..9956831 44..515 100 -> Plus
chr2L 9956891..9957816 516..1441 100 -> Plus
chr2L 9957871..9958042 1442..1613 100 -> Plus
chr2L 9958481..9959099 1614..2232 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:53:00 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 1..1581 204..1784 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:43 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 1..1581 204..1784 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:57 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 1..1581 204..1784 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:41:01 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 1..1581 204..1784 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:23:49 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 1..1581 204..1784 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:02:29 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 1..2232 1..2232 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:43 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 1..2232 1..2232 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:57 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 1..2224 9..2232 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:41:01 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 1..2232 1..2232 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:23:49 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 1..2224 9..2232 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:24 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9957287..9957329 1..43 100 -> Plus
2L 9957429..9957900 44..515 100 -> Plus
2L 9957960..9958885 516..1441 100 -> Plus
2L 9958940..9959111 1442..1613 100 -> Plus
2L 9959550..9960168 1614..2232 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:24 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9957287..9957329 1..43 100 -> Plus
2L 9957429..9957900 44..515 100 -> Plus
2L 9957960..9958885 516..1441 100 -> Plus
2L 9958940..9959111 1442..1613 100 -> Plus
2L 9959550..9960168 1614..2232 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:24 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9957287..9957329 1..43 100 -> Plus
2L 9957429..9957900 44..515 100 -> Plus
2L 9957960..9958885 516..1441 100 -> Plus
2L 9958940..9959111 1442..1613 100 -> Plus
2L 9959550..9960168 1614..2232 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:57 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9958940..9959111 1442..1613 100 -> Plus
arm_2L 9957287..9957329 1..43 100 -> Plus
arm_2L 9957429..9957900 44..515 100 -> Plus
arm_2L 9957960..9958885 516..1441 100 -> Plus
arm_2L 9959550..9960168 1614..2232 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:11:28 Download gff for RE10231.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9957429..9957900 44..515 100 -> Plus
2L 9957960..9958885 516..1441 100 -> Plus
2L 9958940..9959111 1442..1613 100 -> Plus
2L 9959550..9960168 1614..2232 100   Plus
2L 9957287..9957329 1..43 100 -> Plus

RE10231.pep Sequence

Translation from 203 to 1783

> RE10231.pep
MGNTSSKGESDASEPPLEGGKPYKQHQQHKSSDASHNGVSDVGGSHNNLK
VTQAQGSMTRSASGADVTEKYLTQLVPVEKLAEILREQTSSKLGINGIVA
DVFVSQVFPQYADLGQRLFNLMHSNSKATTKHLGAVAFRQQCERFLGIMD
DSKTLECYIKMYAQEENPDQIDKTGVTRLLHICYTIAMQHSGNAVLCPAI
NRTFGSVTKSIFLCHDSMSLGYVCRWFEQNLMRLVLLVHKYCVHTLSTAY
RGLEQQNQSCGIELQTPVLEQRNPFTDTTDFSGGSTREMDSLMPLSQAWL
LAGALPPLYSKPQTVTPPATKGNNNVSASTAVQIFKDKLSMMPSHWTLLY
NSNEHGVGANRFLHHVLGYRGPTLVLLHTKDEQTYCVASPSEWKETHLFV
GGEGSCVIQLLPKFVILEKKPNILYLNTSIRGYPKGLRAGADPRKPIIAV
DEHFENIDCKGLAAGLMSIEVWGCGDKSSREVQLDIKKWQIKEAERQRTV
KLTAADWMDHPDRYLLELGGRQNYNN*

RE10231.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15732-PA 531 GF15732-PA 1..531 1..526 2563 89.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10073-PA 526 GG10073-PA 1..526 1..526 2785 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11062-PA 542 GH11062-PA 4..542 3..526 2247 80.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-PD 526 CG4658-PD 1..526 1..526 2780 100 Plus
CG4658-PA 526 CG4658-PA 1..526 1..526 2780 100 Plus
CG4658-PC 526 CG4658-PC 1..526 1..526 2780 100 Plus
CG4658-PB 526 CG4658-PB 1..526 1..526 2780 100 Plus
CG4658-PE 491 CG4658-PE 1..471 1..471 2476 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17579-PA 543 GI17579-PA 4..543 3..526 2268 80.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18950-PA 495 GL18950-PA 3..495 34..526 2385 89.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18335-PA 536 GA18335-PA 1..536 1..526 2492 87.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17843-PA 526 GM17843-PA 1..526 1..526 2843 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23644-PA 526 GD23644-PA 1..526 1..526 2848 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17922-PA 538 GJ17922-PA 4..538 3..526 2239 80.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15579-PA 404 GK15579-PA 85..404 213..526 1544 89.1 Plus
Dwil\GK24123-PA 303 GK24123-PA 1..303 230..526 1431 88.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18885-PA 527 GE18885-PA 1..527 1..526 2769 97 Plus

RE10231.hyp Sequence

Translation from 203 to 1783

> RE10231.hyp
MGNTSSKGESDASEPPLEGGKPYKQHQQHKSSDASHNGVSDVGGSHNNLK
VTQAQGSMTRSASGADVTEKYLTQLVPVEKLAEILREQTSSKLGINGIVA
DVFVSQVFPQYADLGQRLFNLMHSNSKATTKHLGAVAFRQQCERFLGIMD
DSKTLECYIKMYAQEENPDQIDKTGVTRLLHICYTIAMQHSGNAVLCPAI
NRTFGSVTKSIFLCHDSMSLGYVCRWFEQNLMRLVLLVHKYCVHTLSTAY
RGLEQQNQSCGIELQTPVLEQRNPFTDTTDFSGGSTREMDSLMPLSQAWL
LAGALPPLYSKPQTVTPPATKGNNNVSASTAVQIFKDKLSMMPSHWTLLY
NSNEHGVGANRFLHHVLGYRGPTLVLLHTKDEQTYCVASPSEWKETHLFV
GGEGSCVIQLLPKFVILEKKPNILYLNTSIRGYPKGLRAGADPRKPIIAV
DEHFENIDCKGLAAGLMSIEVWGCGDKSSREVQLDIKKWQIKEAERQRTV
KLTAADWMDHPDRYLLELGGRQNYNN*

RE10231.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-PD 526 CG4658-PD 1..526 1..526 2780 100 Plus
CG4658-PA 526 CG4658-PA 1..526 1..526 2780 100 Plus
CG4658-PC 526 CG4658-PC 1..526 1..526 2780 100 Plus
CG4658-PB 526 CG4658-PB 1..526 1..526 2780 100 Plus
CG4658-PE 491 CG4658-PE 1..471 1..471 2476 100 Plus