Clone RE10237 Report

Search the DGRC for RE10237

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:102
Well:37
Vector:pFlc-1
Associated Gene/TranscriptCG11790-RB
Protein status:RE10237.pep: gold
Sequenced Size:1085

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11790 2004-03-31 Blastp of sequenced clone
CG11790 2008-04-29 Release 5.5 accounting
CG11790 2008-08-15 Release 5.9 accounting
CG11790 2008-12-18 5.12 accounting

Clone Sequence Records

RE10237.complete Sequence

1085 bp (1085 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012482

> RE10237.complete
AGTGGTCAACTCCGCTGCTGCAGATCCACAGCCAAAAAATGCTGCACATA
GTATCGGTTGTTATTATAGCCCTGAGTCTGGGCTGTGCCGTTGGCCAGGA
TTTGCGGCGTGTGGACGACACCGAGTTGATTCAACTCCTGACCGGCAGCA
GCAATGTGGTTGTCCTATTCAGTGAGTATTGGTAGGAAAGTCAGCCAGAG
AAATCCAGCCTACGTGTCCACTGTGCATATGGAGGATGGTACACCGGTTA
CTGGCTAACGAGCACACTTAATTGCAGACAAAAACAATTGCCAGCGCTGC
GTGGAATATGAGAACATGGTGACCAAGATACGTGCCCAGCTGGAGGAGAC
CTTGTCGGCCATTGTGGTCCAGTCGGTGGACAGCAACCTGGTATCCATCT
ATGACCCCAGCAAGGAGCCCGCTTTGGTGTTCTTCAGGCGAGGAATACCC
ATTCTATACCATGGCGAGATCAACGATGACGAAATCCTAGACTTCTTCAA
TGACAACTTAGAGCCGGCGGTCAAAGAGCTTTCCGACGACAACTTCGAGC
ACCTGACTCAAGCCTCGTCGGGTGCCACTACCGGGGACTGGTTTATCTTC
TTCTCTTCGGCCGAATGTACCGTCTGTCAGCGACTCTATGCCGTTTGGGA
GTCTGTGGGCGGAAAGCTAAAGCGAAAGCTGAATATTGCCCGCATGAACA
GTTTGGAGTCTGGAATCTCAACTGCTACGCGACTGGGAGTATTGGAAGCA
CCGGCTTTTATTTTCTTGAGGCAAGGAAAGATGTACAAATATTCAGCCAA
GCAATACAGTCCCGAAGCCTTTGTCCAGTTTGCTGAGAAGGGATATACCC
AGAGCCATCCTCAACCAGTGCCCGCAATCCCAAGTGCCGTAAACGAATTT
TTGGGCCCACTGCAAAGTTATTTTGCAGCTGAAAACATAACATCGCTGGC
GACTTTGAGTATTTTCGCCTTAGTTGCTCTCTTATTCGTTGGCAAAAAGG
TTGCCAAAATATTCAGTTCAGAGCCTGCGAAAACAAAAAATAAGTCGAAA
TAAAACTAATATAAAGACCAAAAAAAAAAAAAAAA

RE10237.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RB 1122 CG11790-RB 49..1120 1..1072 5315 99.7 Plus
CG11790.b 1026 CG11790.b 229..1024 277..1072 3950 99.7 Plus
CG11790-RA 1223 CG11790-RA 322..1116 278..1072 3945 99.7 Plus
CG11790.b 1026 CG11790.b 49..229 1..181 890 99.4 Plus
CG11790-RA 1223 CG11790-RA 151..321 1..171 840 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20870932..20871533 1..602 2965 99.5 Plus
chr3R 27901430 chr3R 20872456..20872633 891..1068 890 100 Plus
chr3R 27901430 chr3R 20871626..20871787 603..764 795 99.4 Plus
chr3R 27901430 chr3R 20871849..20871974 765..890 615 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:32:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25047748..25048349 1..602 2980 99.7 Plus
3R 32079331 3R 25049272..25049453 891..1072 895 99.5 Plus
3R 32079331 3R 25048442..25048603 603..764 810 100 Plus
3R 32079331 3R 25048665..25048790 765..890 630 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24788579..24789180 1..602 2980 99.6 Plus
3R 31820162 3R 24790103..24790284 891..1072 895 99.4 Plus
3R 31820162 3R 24789273..24789434 603..764 810 100 Plus
3R 31820162 3R 24789496..24789621 765..890 630 100 Plus
Blast to na_te.dros performed 2019-03-16 12:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 2201..2270 1026..954 116 66.7 Minus

RE10237.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:08:12 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20870932..20871533 1..602 99 -> Plus
chr3R 20871626..20871787 603..764 99 -> Plus
chr3R 20871849..20871974 765..890 99 -> Plus
chr3R 20872456..20872633 891..1069 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:53:02 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 1..128 39..166 100 == Plus
CG11790-RA 129..909 271..1053 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:18 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 1..128 39..166 100 == Plus
CG11790-RA 129..909 271..1053 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:30:07 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 1..128 39..166 100 == Plus
CG11790-RA 129..909 271..1053 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:07 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 1..128 39..166 100 == Plus
CG11790-RA 129..909 271..1053 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:08 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 1..128 39..166 100 == Plus
CG11790-RA 129..909 271..1053 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:46:19 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RB 49..1116 1..1069 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:18 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RB 49..1116 1..1069 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:30:07 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RB 43..1110 1..1069 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:07 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RB 49..1116 1..1069 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:08 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RB 43..1110 1..1069 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:12 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25047748..25048349 1..602 99 -> Plus
3R 25048442..25048603 603..764 100 -> Plus
3R 25048665..25048790 765..890 100 -> Plus
3R 25049272..25049449 891..1069 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:12 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25047748..25048349 1..602 99 -> Plus
3R 25048442..25048603 603..764 100 -> Plus
3R 25048665..25048790 765..890 100 -> Plus
3R 25049272..25049449 891..1069 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:12 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25047748..25048349 1..602 99 -> Plus
3R 25048442..25048603 603..764 100 -> Plus
3R 25048665..25048790 765..890 100 -> Plus
3R 25049272..25049449 891..1069 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:30:07 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20873470..20874071 1..602 99 -> Plus
arm_3R 20874164..20874325 603..764 100 -> Plus
arm_3R 20874387..20874512 765..890 100 -> Plus
arm_3R 20874994..20875171 891..1069 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:33 Download gff for RE10237.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24788579..24789180 1..602 99 -> Plus
3R 24789273..24789434 603..764 100 -> Plus
3R 24789496..24789621 765..890 100 -> Plus
3R 24790103..24790280 891..1069 99   Plus

RE10237.hyp Sequence

Translation from 315 to 1052

> RE10237.hyp
MVTKIRAQLEETLSAIVVQSVDSNLVSIYDPSKEPALVFFRRGIPILYHG
EINDDEILDFFNDNLEPAVKELSDDNFEHLTQASSGATTGDWFIFFSSAE
CTVCQRLYAVWESVGGKLKRKLNIARMNSLESGISTATRLGVLEAPAFIF
LRQGKMYKYSAKQYSPEAFVQFAEKGYTQSHPQPVPAIPSAVNEFLGPLQ
SYFAAENITSLATLSIFALVALLFVGKKVAKIFSSEPAKTKNKSK*

RE10237.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-PB 245 CG11790-PB 1..245 1..245 1239 100 Plus
CG11790-PA 302 CG11790-PA 58..302 1..245 1239 100 Plus
CG11790-PC 251 CG11790-PC 58..250 1..193 985 99.5 Plus

RE10237.pep Sequence

Translation from 315 to 1052

> RE10237.pep
MVTKIRAQLEETLSAIVVQSVDSNLVSIYDPSKEPALVFFRRGIPILYHG
EINDDEILDFFNDNLEPAVKELSDDNFEHLTQASSGATTGDWFIFFSSAE
CTVCQRLYAVWESVGGKLKRKLNIARMNSLESGISTATRLGVLEAPAFIF
LRQGKMYKYSAKQYSPEAFVQFAEKGYTQSHPQPVPAIPSAVNEFLGPLQ
SYFAAENITSLATLSIFALVALLFVGKKVAKIFSSEPAKTKNKSK*

RE10237.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17881-PA 298 GF17881-PA 56..297 1..241 1021 77.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11351-PA 302 GG11351-PA 58..302 1..245 1274 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13139-PA 303 GH13139-PA 58..290 1..231 740 57.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-PB 245 CG11790-PB 1..245 1..245 1239 100 Plus
CG11790-PA 302 CG11790-PA 58..302 1..245 1239 100 Plus
CG11790-PC 251 CG11790-PC 58..250 1..193 985 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22880-PA 302 GI22880-PA 58..302 1..243 769 57.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21887-PA 245 GL21887-PA 58..245 2..245 407 40.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11201-PB 248 GA11201-PB 19..248 12..245 733 58.3 Plus
Dpse\GA11201-PA 226 GA11201-PA 1..226 16..245 729 58.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17791-PA 302 GM17791-PA 58..302 1..245 1268 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21162-PA 303 GD21162-PA 58..303 1..245 1199 94.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23429-PA 302 GJ23429-PA 58..290 1..231 770 60.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13403-PA 306 GK13403-PA 62..306 1..245 774 57.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23547-PA 302 GE23547-PA 58..302 1..245 1267 97.1 Plus