BDGP Sequence Production Resources |
Search the DGRC for RE10237
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 102 |
Well: | 37 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11790-RB |
Protein status: | RE10237.pep: gold |
Sequenced Size: | 1085 |
Gene | Date | Evidence |
---|---|---|
CG11790 | 2004-03-31 | Blastp of sequenced clone |
CG11790 | 2008-04-29 | Release 5.5 accounting |
CG11790 | 2008-08-15 | Release 5.9 accounting |
CG11790 | 2008-12-18 | 5.12 accounting |
1085 bp (1085 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012482
> RE10237.complete AGTGGTCAACTCCGCTGCTGCAGATCCACAGCCAAAAAATGCTGCACATA GTATCGGTTGTTATTATAGCCCTGAGTCTGGGCTGTGCCGTTGGCCAGGA TTTGCGGCGTGTGGACGACACCGAGTTGATTCAACTCCTGACCGGCAGCA GCAATGTGGTTGTCCTATTCAGTGAGTATTGGTAGGAAAGTCAGCCAGAG AAATCCAGCCTACGTGTCCACTGTGCATATGGAGGATGGTACACCGGTTA CTGGCTAACGAGCACACTTAATTGCAGACAAAAACAATTGCCAGCGCTGC GTGGAATATGAGAACATGGTGACCAAGATACGTGCCCAGCTGGAGGAGAC CTTGTCGGCCATTGTGGTCCAGTCGGTGGACAGCAACCTGGTATCCATCT ATGACCCCAGCAAGGAGCCCGCTTTGGTGTTCTTCAGGCGAGGAATACCC ATTCTATACCATGGCGAGATCAACGATGACGAAATCCTAGACTTCTTCAA TGACAACTTAGAGCCGGCGGTCAAAGAGCTTTCCGACGACAACTTCGAGC ACCTGACTCAAGCCTCGTCGGGTGCCACTACCGGGGACTGGTTTATCTTC TTCTCTTCGGCCGAATGTACCGTCTGTCAGCGACTCTATGCCGTTTGGGA GTCTGTGGGCGGAAAGCTAAAGCGAAAGCTGAATATTGCCCGCATGAACA GTTTGGAGTCTGGAATCTCAACTGCTACGCGACTGGGAGTATTGGAAGCA CCGGCTTTTATTTTCTTGAGGCAAGGAAAGATGTACAAATATTCAGCCAA GCAATACAGTCCCGAAGCCTTTGTCCAGTTTGCTGAGAAGGGATATACCC AGAGCCATCCTCAACCAGTGCCCGCAATCCCAAGTGCCGTAAACGAATTT TTGGGCCCACTGCAAAGTTATTTTGCAGCTGAAAACATAACATCGCTGGC GACTTTGAGTATTTTCGCCTTAGTTGCTCTCTTATTCGTTGGCAAAAAGG TTGCCAAAATATTCAGTTCAGAGCCTGCGAAAACAAAAAATAAGTCGAAA TAAAACTAATATAAAGACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11790-RB | 1122 | CG11790-RB | 49..1120 | 1..1072 | 5315 | 99.7 | Plus |
CG11790.b | 1026 | CG11790.b | 229..1024 | 277..1072 | 3950 | 99.7 | Plus |
CG11790-RA | 1223 | CG11790-RA | 322..1116 | 278..1072 | 3945 | 99.7 | Plus |
CG11790.b | 1026 | CG11790.b | 49..229 | 1..181 | 890 | 99.4 | Plus |
CG11790-RA | 1223 | CG11790-RA | 151..321 | 1..171 | 840 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20870932..20871533 | 1..602 | 2965 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 20872456..20872633 | 891..1068 | 890 | 100 | Plus |
chr3R | 27901430 | chr3R | 20871626..20871787 | 603..764 | 795 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 20871849..20871974 | 765..890 | 615 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 25047748..25048349 | 1..602 | 2980 | 99.7 | Plus |
3R | 32079331 | 3R | 25049272..25049453 | 891..1072 | 895 | 99.5 | Plus |
3R | 32079331 | 3R | 25048442..25048603 | 603..764 | 810 | 100 | Plus |
3R | 32079331 | 3R | 25048665..25048790 | 765..890 | 630 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24788579..24789180 | 1..602 | 2980 | 99.6 | Plus |
3R | 31820162 | 3R | 24790103..24790284 | 891..1072 | 895 | 99.4 | Plus |
3R | 31820162 | 3R | 24789273..24789434 | 603..764 | 810 | 100 | Plus |
3R | 31820162 | 3R | 24789496..24789621 | 765..890 | 630 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 2201..2270 | 1026..954 | 116 | 66.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20870932..20871533 | 1..602 | 99 | -> | Plus |
chr3R | 20871626..20871787 | 603..764 | 99 | -> | Plus |
chr3R | 20871849..20871974 | 765..890 | 99 | -> | Plus |
chr3R | 20872456..20872633 | 891..1069 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11790-RA | 1..128 | 39..166 | 100 | == | Plus |
CG11790-RA | 129..909 | 271..1053 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11790-RA | 1..128 | 39..166 | 100 | == | Plus |
CG11790-RA | 129..909 | 271..1053 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11790-RA | 1..128 | 39..166 | 100 | == | Plus |
CG11790-RA | 129..909 | 271..1053 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11790-RA | 1..128 | 39..166 | 100 | == | Plus |
CG11790-RA | 129..909 | 271..1053 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11790-RA | 1..128 | 39..166 | 100 | == | Plus |
CG11790-RA | 129..909 | 271..1053 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11790-RB | 49..1116 | 1..1069 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11790-RB | 49..1116 | 1..1069 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11790-RB | 43..1110 | 1..1069 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11790-RB | 49..1116 | 1..1069 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11790-RB | 43..1110 | 1..1069 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25047748..25048349 | 1..602 | 99 | -> | Plus |
3R | 25048442..25048603 | 603..764 | 100 | -> | Plus |
3R | 25048665..25048790 | 765..890 | 100 | -> | Plus |
3R | 25049272..25049449 | 891..1069 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25047748..25048349 | 1..602 | 99 | -> | Plus |
3R | 25048442..25048603 | 603..764 | 100 | -> | Plus |
3R | 25048665..25048790 | 765..890 | 100 | -> | Plus |
3R | 25049272..25049449 | 891..1069 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25047748..25048349 | 1..602 | 99 | -> | Plus |
3R | 25048442..25048603 | 603..764 | 100 | -> | Plus |
3R | 25048665..25048790 | 765..890 | 100 | -> | Plus |
3R | 25049272..25049449 | 891..1069 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20873470..20874071 | 1..602 | 99 | -> | Plus |
arm_3R | 20874164..20874325 | 603..764 | 100 | -> | Plus |
arm_3R | 20874387..20874512 | 765..890 | 100 | -> | Plus |
arm_3R | 20874994..20875171 | 891..1069 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24788579..24789180 | 1..602 | 99 | -> | Plus |
3R | 24789273..24789434 | 603..764 | 100 | -> | Plus |
3R | 24789496..24789621 | 765..890 | 100 | -> | Plus |
3R | 24790103..24790280 | 891..1069 | 99 | Plus |
Translation from 315 to 1052
> RE10237.hyp MVTKIRAQLEETLSAIVVQSVDSNLVSIYDPSKEPALVFFRRGIPILYHG EINDDEILDFFNDNLEPAVKELSDDNFEHLTQASSGATTGDWFIFFSSAE CTVCQRLYAVWESVGGKLKRKLNIARMNSLESGISTATRLGVLEAPAFIF LRQGKMYKYSAKQYSPEAFVQFAEKGYTQSHPQPVPAIPSAVNEFLGPLQ SYFAAENITSLATLSIFALVALLFVGKKVAKIFSSEPAKTKNKSK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11790-PB | 245 | CG11790-PB | 1..245 | 1..245 | 1239 | 100 | Plus |
CG11790-PA | 302 | CG11790-PA | 58..302 | 1..245 | 1239 | 100 | Plus |
CG11790-PC | 251 | CG11790-PC | 58..250 | 1..193 | 985 | 99.5 | Plus |
Translation from 315 to 1052
> RE10237.pep MVTKIRAQLEETLSAIVVQSVDSNLVSIYDPSKEPALVFFRRGIPILYHG EINDDEILDFFNDNLEPAVKELSDDNFEHLTQASSGATTGDWFIFFSSAE CTVCQRLYAVWESVGGKLKRKLNIARMNSLESGISTATRLGVLEAPAFIF LRQGKMYKYSAKQYSPEAFVQFAEKGYTQSHPQPVPAIPSAVNEFLGPLQ SYFAAENITSLATLSIFALVALLFVGKKVAKIFSSEPAKTKNKSK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17881-PA | 298 | GF17881-PA | 56..297 | 1..241 | 1021 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11351-PA | 302 | GG11351-PA | 58..302 | 1..245 | 1274 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13139-PA | 303 | GH13139-PA | 58..290 | 1..231 | 740 | 57.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11790-PB | 245 | CG11790-PB | 1..245 | 1..245 | 1239 | 100 | Plus |
CG11790-PA | 302 | CG11790-PA | 58..302 | 1..245 | 1239 | 100 | Plus |
CG11790-PC | 251 | CG11790-PC | 58..250 | 1..193 | 985 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22880-PA | 302 | GI22880-PA | 58..302 | 1..243 | 769 | 57.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21887-PA | 245 | GL21887-PA | 58..245 | 2..245 | 407 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11201-PB | 248 | GA11201-PB | 19..248 | 12..245 | 733 | 58.3 | Plus |
Dpse\GA11201-PA | 226 | GA11201-PA | 1..226 | 16..245 | 729 | 58.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17791-PA | 302 | GM17791-PA | 58..302 | 1..245 | 1268 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21162-PA | 303 | GD21162-PA | 58..303 | 1..245 | 1199 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23429-PA | 302 | GJ23429-PA | 58..290 | 1..231 | 770 | 60.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13403-PA | 306 | GK13403-PA | 62..306 | 1..245 | 774 | 57.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23547-PA | 302 | GE23547-PA | 58..302 | 1..245 | 1267 | 97.1 | Plus |