Clone RE10370 Report

Search the DGRC for RE10370

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:103
Well:70
Vector:pFlc-1
Associated Gene/TranscriptCG5895-RA
Protein status:RE10370.pep: gold
Preliminary Size:1366
Sequenced Size:1526

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5895 2001-12-14 Blastp of sequenced clone
CG5895 2002-01-01 Sim4 clustering to Release 2
CG5895 2003-01-01 Sim4 clustering to Release 3
CG5895 2008-04-29 Release 5.5 accounting
CG5895 2008-08-15 Release 5.9 accounting
CG5895 2008-12-18 5.12 accounting

Clone Sequence Records

RE10370.complete Sequence

1526 bp (1526 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071021

> RE10370.complete
AATTCGGCGCTGGATGCCGAGCAAACAACACGCCAAATCTATTCAAAGTG
CACGTAATTTCTAATTGAGTGTCAAGTTTAGAGATGATAAAAGCGTATAT
AATTTTGGTGCCTTTGCTGCAGTCAATTCTTTTGATTGGCTCCCTTGAAG
CGGGCTGTCCTGTTTACCTAACCATTTCGCTGACGGGCAAAACCCTGCAG
GACACCTTTCTCGAGATCAACTGGGGCCCGAACTGCTATGGACCACCCGA
GTGGGTGGGTATCTACAGCCAGGATCCGGCCATCTCCAACTTTCAGCCAG
ATCTGCGCATCAATGGTATTTTCAATATAACCGGCAAAATGCAGACGCCC
ATCAAGCTGGGCAAGCTTCGTTTTCCCGGTGGCTGGAACAAAAAAGATAG
TAGCGATCAGCCGGCAACGCAATATCTCAAGGGCAAGTGCCTGCCACACT
ATGTGGCCAGCTACAATGGCACCGAGCTGCTCACGGTGGATTGCCTTAAG
ATACAGCCCAATTGGATGGGCCAGATCAAGGACATCAATCGAATGGCGCT
GAAGGATATCTTCCTGCCCGGCACACATGCCTCGGCGGCCGTCTTGGGCA
GCTCCAGTAAGTCCAATTCGATACTGGTCAGGGATTACCTGGTGGCCCAG
CAGCTCGATGTTTGGTCGCAGCTAGTCTTTGGCATACGTTATCTCGATTT
AAGCATTGGATACAAGAACATGAACACCGAGAATGATGCCGATAATTTCT
GGATAGCCAACGAGAATATGCTGATTACACCGCTACTCACAGTTCTACGT
GATGTTCGTCAGTTTGTTAAAAGATCTGGCGAAGTGGTAGTCCTGGATTT
TAGTAGTTTTCCCATCGGCTTTTACAAGCATCCAGAGATCTACAGCTCGC
TATTCCGGCTAATTCGCCAGGAGCTGGGCGATGAGACCTATCGGCGTAAT
GTGGGCAAGGACGAAAACTGTGCGAATCGAAATTTCAGCGAAATACTGCT
TCAAAAGAGGCATCTGGTGATATTATTTCCCACGCAGGAGCTGCCCTATC
CGGACAGAGAATCGAACATGCTCTGCCCGCCGTGGCAGCGTTTTAGCACC
AGCTTTATGAATATTTCTCAAACTCTGGACTATATGCGTCTGTTGTTCAG
CAGGAAGCCGGATTCTCCAGTTCGGAATGTTGGATGGATATTCACGGCGG
TGAGGAGCATGGAGCAGACACTGAACGCCCACCAATTGCAGACCGCCAAG
GAGCGGGCGGCGGTGCTGAATCCCAAGATAAATAAGTGGCTAAAAGGACC
TTGGGGCTATAATGCCAATGTGGTTGCCATGGACTACTTTAGCAATACGA
ATATCGTGGATCTGGCCATTCAAGTCAATGCGCACAAGGCTTTTGTCATG
GCTAACCGCGATTATGTAAATTTGGAAATATTTAATTTGTACTGAATTGT
ATAATACTATAGATCCCTGCTTCAGTAATAGATATGTTAATAAACAAAAC
ACACAACTAGAAAAAAAAAAAAAAAA

RE10370.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-RA 1596 CG5895-RA 85..1596 1..1512 7560 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16025491..16026051 149..709 2685 98.6 Plus
chr3L 24539361 chr3L 16026534..16026986 1058..1510 2235 99.6 Plus
chr3L 24539361 chr3L 16026111..16026461 709..1059 1680 98.6 Plus
chr3L 24539361 chr3L 16025247..16025396 1..150 750 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:32:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16035731..16036291 149..709 2805 100 Plus
3L 28110227 3L 16036775..16037229 1058..1512 2275 100 Plus
3L 28110227 3L 16036351..16036701 709..1059 1755 100 Plus
3L 28110227 3L 16035487..16035636 1..150 750 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16028831..16029391 149..709 2805 100 Plus
3L 28103327 3L 16029875..16030329 1058..1512 2275 100 Plus
3L 28103327 3L 16029451..16029801 709..1059 1755 100 Plus
3L 28103327 3L 16028587..16028736 1..150 750 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:59:02 has no hits.

RE10370.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:00:10 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16025247..16025396 1..150 100 -> Plus
chr3L 16025493..16026051 151..709 98 -> Plus
chr3L 16026112..16026461 710..1059 98 -> Plus
chr3L 16026536..16026986 1060..1510 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:53:08 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 1..1362 84..1445 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:08:05 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 1..1362 84..1445 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:21:11 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 1..1362 84..1445 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:32:22 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 1..1362 84..1445 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:27:01 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 1..1362 84..1445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:36:54 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 1..1510 1..1510 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:08:05 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 1..1510 1..1510 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:11 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 3..1512 1..1510 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:32:22 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 1..1510 1..1510 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:27:01 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 3..1512 1..1510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:00:10 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16035487..16035636 1..150 100 -> Plus
3L 16035733..16036291 151..709 100 -> Plus
3L 16036352..16036701 710..1059 100 -> Plus
3L 16036777..16037227 1060..1510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:00:10 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16035487..16035636 1..150 100 -> Plus
3L 16035733..16036291 151..709 100 -> Plus
3L 16036352..16036701 710..1059 100 -> Plus
3L 16036777..16037227 1060..1510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:00:10 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16035487..16035636 1..150 100 -> Plus
3L 16035733..16036291 151..709 100 -> Plus
3L 16036352..16036701 710..1059 100 -> Plus
3L 16036777..16037227 1060..1510 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:11 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16028587..16028736 1..150 100 -> Plus
arm_3L 16028833..16029391 151..709 100 -> Plus
arm_3L 16029452..16029801 710..1059 100 -> Plus
arm_3L 16029877..16030327 1060..1510 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:09:15 Download gff for RE10370.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16028833..16029391 151..709 100 -> Plus
3L 16029452..16029801 710..1059 100 -> Plus
3L 16029877..16030327 1060..1510 100   Plus
3L 16028587..16028736 1..150 100 -> Plus

RE10370.pep Sequence

Translation from 83 to 1444

> RE10370.pep
MIKAYIILVPLLQSILLIGSLEAGCPVYLTISLTGKTLQDTFLEINWGPN
CYGPPEWVGIYSQDPAISNFQPDLRINGIFNITGKMQTPIKLGKLRFPGG
WNKKDSSDQPATQYLKGKCLPHYVASYNGTELLTVDCLKIQPNWMGQIKD
INRMALKDIFLPGTHASAAVLGSSSKSNSILVRDYLVAQQLDVWSQLVFG
IRYLDLSIGYKNMNTENDADNFWIANENMLITPLLTVLRDVRQFVKRSGE
VVVLDFSSFPIGFYKHPEIYSSLFRLIRQELGDETYRRNVGKDENCANRN
FSEILLQKRHLVILFPTQELPYPDRESNMLCPPWQRFSTSFMNISQTLDY
MRLLFSRKPDSPVRNVGWIFTAVRSMEQTLNAHQLQTAKERAAVLNPKIN
KWLKGPWGYNANVVAMDYFSNTNIVDLAIQVNAHKAFVMANRDYVNLEIF
NLY*

RE10370.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23760-PA 466 GF23760-PA 9..452 8..450 1803 73.9 Plus
Dana\GF21553-PA 479 GF21553-PA 173..479 125..438 266 27.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15945-PA 453 GG15945-PA 1..452 1..452 2167 90.3 Plus
Dere\GG23759-PA 481 GG23759-PA 184..481 132..438 256 26.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16059-PA 450 GH16059-PA 20..448 23..451 1679 68.5 Plus
Dgri\GH11570-PA 476 GH11570-PA 168..473 123..435 240 25.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-PA 453 CG5895-PA 1..453 1..453 2392 100 Plus
CG5895-PC 368 CG5895-PC 1..368 86..453 1940 100 Plus
CG14945-PA 482 CG14945-PA 185..482 132..438 270 26 Plus
CG14945-PB 482 CG14945-PB 185..482 132..438 270 26 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12322-PA 451 GI12322-PA 13..449 16..451 1682 67.7 Plus
Dmoj\GI17061-PA 471 GI17061-PA 183..468 123..435 189 23.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25082-PA 152 GL25082-PA 23..151 323..450 565 79.1 Plus
Dper\GL16151-PA 485 GL16151-PA 177..482 123..435 255 26.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19210-PA 456 GA19210-PA 21..455 17..450 1825 74.7 Plus
Dpse\GA13372-PA 485 GA13372-PA 177..482 123..435 252 26.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25579-PA 453 GM25579-PA 1..453 1..453 2343 95.8 Plus
Dsec\GM26709-PA 285 GM26709-PA 8..285 151..438 221 26 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14591-PA 454 GD14591-PA 1..454 1..453 2351 96.7 Plus
Dsim\GD23811-PA 466 GD23811-PA 147..466 111..438 269 26.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13260-PA 450 GJ13260-PA 8..447 11..450 1705 68.6 Plus
Dvir\GJ17313-PA 491 GJ17313-PA 183..488 123..435 241 25.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24125-PA 454 GK24125-PA 12..453 15..453 1713 67.4 Plus
Dwil\GK21098-PA 467 GK21098-PA 158..464 123..436 246 26.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19802-PA 453 GE19802-PA 1..453 1..453 2228 90.3 Plus
Dyak\GE22886-PA 453 GE22886-PA 1..453 1..453 2223 90.1 Plus
Dyak\GE18565-PA 480 GE18565-PA 183..480 132..438 264 26.9 Plus

RE10370.hyp Sequence

Translation from 83 to 1444

> RE10370.hyp
MIKAYIILVPLLQSILLIGSLEAGCPVYLTISLTGKTLQDTFLEINWGPN
CYGPPEWVGIYSQDPAISNFQPDLRINGIFNITGKMQTPIKLGKLRFPGG
WNKKDSSDQPATQYLKGKCLPHYVASYNGTELLTVDCLKIQPNWMGQIKD
INRMALKDIFLPGTHASAAVLGSSSKSNSILVRDYLVAQQLDVWSQLVFG
IRYLDLSIGYKNMNTENDADNFWIANENMLITPLLTVLRDVRQFVKRSGE
VVVLDFSSFPIGFYKHPEIYSSLFRLIRQELGDETYRRNVGKDENCANRN
FSEILLQKRHLVILFPTQELPYPDRESNMLCPPWQRFSTSFMNISQTLDY
MRLLFSRKPDSPVRNVGWIFTAVRSMEQTLNAHQLQTAKERAAVLNPKIN
KWLKGPWGYNANVVAMDYFSNTNIVDLAIQVNAHKAFVMANRDYVNLEIF
NLY*

RE10370.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-PA 453 CG5895-PA 1..453 1..453 2392 100 Plus
CG5895-PC 368 CG5895-PC 1..368 86..453 1940 100 Plus
CG14945-PA 482 CG14945-PA 185..482 132..438 270 26 Plus
CG14945-PB 482 CG14945-PB 185..482 132..438 270 26 Plus