Clone RE10407 Report

Search the DGRC for RE10407

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:104
Well:7
Vector:pFlc-1
Associated Gene/TranscriptCG9391-RA
Protein status:RE10407.pep: gold
Preliminary Size:1047
Sequenced Size:1097

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9391 2001-12-14 Blastp of sequenced clone
CG9391 2002-01-01 Sim4 clustering to Release 2
CG9391 2003-01-01 Sim4 clustering to Release 3
CG9391 2008-04-29 Release 5.5 accounting
CG9391 2008-08-15 Release 5.9 accounting
CG9391 2008-12-18 5.12 accounting

Clone Sequence Records

RE10407.complete Sequence

1097 bp (1097 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071022

> RE10407.complete
ATAGTTTAATTAAAACTTGCAACTTTTGATTTGTTAGCGGTTCATTGGGA
GTCCAGAAATCACAGAGGCAGCACCACTGCAAAATGTCACACAACGTGGA
CGTGGAAAAGTGCTTAGAGGTGGCCAGCAACCTGGTTTCCGAAGCCGGAA
GGCTCATCGCTCGCAACAATGAGCAGCGACAGGACTTCGTTTGCAAGAGC
AATGACATCGACTTGGTGACCCAAACAGACAAGGATGTGGAGCAGCTGCT
GATGGACGGCATTCGTCGCCACTTTCCGGAGCACAAGTTCATCGGCGAGG
AGGAGAGTAGCGGCGCGGAGGGTGTCAAGAAGCTGACCGATGAGCCCACC
TGGATCATTGATCCCGTGGACGGCACCATGAACTTTGTGCACGCCTTTCC
GCACTCTTGCATCTCCGTGGGTCTGAAGGTGAACAAGGTCACGGAGCTGG
GCTTGGTCTACAATCCCATTCTAGAGCAACGCTTTACTGCGAGACGAGGG
CACGGAGCCTTCTACAACGGGCGCAGGATCCACGTTAGCGGCCAGAAGGA
ACTGGGCAAAGCGCTGGTTACCAGTGAATTCGGTACCACCCGGGACGAGG
CCAAGATGAAGGTCGTGCATGAAAACTTCGAGAAGATGGCCAAAAAGGCG
CATGGCCTACGGGTCCTGGGTTCGGCAGCTCTCAATATGTCGATGGTTGC
TTTGGGAGCCGCCGACGCTAACTATGAATTTGGAATTCACGCCTGGGATG
TGTGTGCCGGCGACTTGATTGTCCGGGAGGCCGGAGGCGTGGTCATCGAT
CCTGCTGGCGGCGAATTCGACATCATGTCTCGAAGGGTCCTGGCGGCAGC
CACACCAGAGTTGGCCCAAGAGATCTCCAAGGTGCTAACGCAGTTTAATC
CCCTTCCTCGCGATGATTAAGAGCTGGCACTTGAACTTCCTATATATATA
TATGTATATAAGTCGAAATGGGACTTAACTAACCAAAAGCATTTTAAATA
TACCGACCATGTACCTAACAAACAAATTGACTACGCCTAGTCACGGATAT
TCCAAATAAACAAATAACGATTGTTTCATGCAAAAAAAAAAAAAAAA

RE10407.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9391-RA 1124 CG9391-RA 40..1119 1..1080 5385 99.9 Plus
CG9391.a 1170 CG9391.a 127..1170 37..1080 5220 100 Plus
CG9389-RA 2076 CG9389-RA 1244..1331 333..420 260 86.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21255689..21256114 1080..655 2130 100 Minus
chr3L 24539361 chr3L 21256175..21256543 655..287 1845 100 Minus
chr3L 24539361 chr3L 21256799..21256950 152..1 745 99.3 Minus
chr3L 24539361 chr3L 21256593..21256729 288..152 685 100 Minus
chr3L 24539361 chr3L 21258210..21258297 420..333 260 86.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:32:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21266681..21267106 1080..655 2130 100 Minus
3L 28110227 3L 21267167..21267535 655..287 1845 100 Minus
3L 28110227 3L 21267791..21267942 152..1 745 99.3 Minus
3L 28110227 3L 21267585..21267721 288..152 685 100 Minus
3L 28110227 3L 21269202..21269289 420..333 260 86.4 Minus
3L 28110227 3L 15977335..15977429 331..425 190 80 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21259781..21260206 1080..655 2130 100 Minus
3L 28103327 3L 21260267..21260635 655..287 1845 100 Minus
3L 28103327 3L 21260891..21261042 152..1 745 99.3 Minus
3L 28103327 3L 21260685..21260821 288..152 685 100 Minus
3L 28103327 3L 21262302..21262389 420..333 260 86.3 Minus
3L 28103327 3L 15970435..15970529 331..425 190 80 Plus
Blast to na_te.dros performed on 2019-03-16 12:36:17 has no hits.

RE10407.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:37:08 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21256175..21256543 287..655 100 <- Minus
chr3L 21256595..21256728 153..286 100 <- Minus
chr3L 21256799..21256950 1..152 99   Minus
chr3L 21255688..21256113 656..1081 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:53:11 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 1..837 84..920 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:06:46 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 1..837 84..920 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:35:08 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 1..837 84..920 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:15 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 1..837 84..920 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:29 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 1..837 84..920 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:12 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 1..1080 1..1080 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:06:45 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 1..1080 1..1080 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:35:08 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 24..1103 1..1081 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:15 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 1..1080 1..1080 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:29 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 24..1103 1..1081 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:37:08 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21266680..21267105 656..1081 99 <- Minus
3L 21267167..21267535 287..655 100 <- Minus
3L 21267587..21267720 153..286 100 <- Minus
3L 21267791..21267942 1..152 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:37:08 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21266680..21267105 656..1081 99 <- Minus
3L 21267167..21267535 287..655 100 <- Minus
3L 21267587..21267720 153..286 100 <- Minus
3L 21267791..21267942 1..152 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:37:08 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21266680..21267105 656..1081 99 <- Minus
3L 21267167..21267535 287..655 100 <- Minus
3L 21267587..21267720 153..286 100 <- Minus
3L 21267791..21267942 1..152 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:35:08 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21259780..21260205 656..1081 99 <- Minus
arm_3L 21260267..21260635 287..655 100 <- Minus
arm_3L 21260687..21260820 153..286 100 <- Minus
arm_3L 21260891..21261042 1..152 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:07:45 Download gff for RE10407.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21259780..21260205 656..1081 99 <- Minus
3L 21260267..21260635 287..655 100 <- Minus
3L 21260687..21260820 153..286 100 <- Minus
3L 21260891..21261042 1..152 99   Minus

RE10407.hyp Sequence

Translation from 83 to 919

> RE10407.hyp
MSHNVDVEKCLEVASNLVSEAGRLIARNNEQRQDFVCKSNDIDLVTQTDK
DVEQLLMDGIRRHFPEHKFIGEEESSGAEGVKKLTDEPTWIIDPVDGTMN
FVHAFPHSCISVGLKVNKVTELGLVYNPILEQRFTARRGHGAFYNGRRIH
VSGQKELGKALVTSEFGTTRDEAKMKVVHENFEKMAKKAHGLRVLGSAAL
NMSMVALGAADANYEFGIHAWDVCAGDLIVREAGGVVIDPAGGEFDIMSR
RVLAAATPELAQEISKVLTQFNPLPRDD*

RE10407.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9391-PC 278 CG9391-PC 1..278 1..278 1437 100 Plus
CG9391-PA 278 CG9391-PA 1..278 1..278 1437 100 Plus
CG9389-PA 596 CG9389-PA 275..548 6..278 667 47.8 Plus
CG17029-PB 284 CG17029-PB 15..274 12..270 515 40.4 Plus
CG17029-PA 284 CG17029-PA 15..274 12..270 515 40.4 Plus

RE10407.pep Sequence

Translation from 83 to 919

> RE10407.pep
MSHNVDVEKCLEVASNLVSEAGRLIARNNEQRQDFVCKSNDIDLVTQTDK
DVEQLLMDGIRRHFPEHKFIGEEESSGAEGVKKLTDEPTWIIDPVDGTMN
FVHAFPHSCISVGLKVNKVTELGLVYNPILEQRFTARRGHGAFYNGRRIH
VSGQKELGKALVTSEFGTTRDEAKMKVVHENFEKMAKKAHGLRVLGSAAL
NMSMVALGAADANYEFGIHAWDVCAGDLIVREAGGVVIDPAGGEFDIMSR
RVLAAATPELAQEISKVLTQFNPLPRDD*

RE10407.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10177-PA 277 GF10177-PA 1..277 1..278 1274 84.9 Plus
Dana\GF10176-PA 639 GF10176-PA 346..601 24..278 622 44.1 Plus
Dana\GF24103-PA 284 GF24103-PA 15..278 12..274 537 40.2 Plus
Dana\GF24104-PA 284 GF24104-PA 1..278 1..274 507 39 Plus
Dana\GF24105-PA 288 GF24105-PA 8..274 6..270 448 37.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13252-PA 278 GG13252-PA 1..278 1..278 1444 96.4 Plus
Dere\GG13251-PA 602 GG13251-PA 281..554 6..278 685 46.7 Plus
Dere\GG15938-PA 284 GG15938-PA 1..272 1..268 538 40.4 Plus
Dere\GG15939-PA 288 GG15939-PA 8..274 6..270 461 37.8 Plus
Dere\GG15937-PA 284 GG15937-PA 46..274 43..270 438 40.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16522-PA 278 GH16522-PA 1..278 1..278 1225 82.4 Plus
Dgri\GH16521-PA 597 GH16521-PA 280..557 2..278 667 45.3 Plus
Dgri\GH14775-PA 286 GH14775-PA 17..280 12..274 516 39.4 Plus
Dgri\GH14777-PA 286 GH14777-PA 10..276 7..270 486 38.2 Plus
Dgri\GH14776-PA 290 GH14776-PA 4..277 6..270 449 37.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9391-PC 278 CG9391-PC 1..278 1..278 1437 100 Plus
CG9391-PA 278 CG9391-PA 1..278 1..278 1437 100 Plus
CG9389-PA 596 CG9389-PA 275..548 6..278 667 47.8 Plus
CG17029-PB 284 CG17029-PB 15..274 12..270 515 40.4 Plus
CG17029-PA 284 CG17029-PA 15..274 12..270 515 40.4 Plus
CG17028-PB 284 CG17028-PB 1..272 1..268 490 39.3 Plus
CG17028-PA 284 CG17028-PA 1..272 1..268 490 39.3 Plus
CG17027-PB 288 CG17027-PB 8..272 6..268 455 37.7 Plus
CG17027-PA 288 CG17027-PA 8..272 6..268 455 37.7 Plus
CG17026-PA 284 CG17026-PA 46..272 43..268 410 39.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12203-PA 278 GI12203-PA 1..278 1..278 1271 82 Plus
Dmoj\GI12201-PA 636 GI12201-PA 358..623 4..268 682 49.6 Plus
Dmoj\GI12202-PA 568 GI12202-PA 259..529 6..278 572 43.3 Plus
Dmoj\GI11877-PA 283 GI11877-PA 9..273 7..270 531 40.4 Plus
Dmoj\GI11880-PA 284 GI11880-PA 5..274 2..270 505 37.8 Plus
Dmoj\GI12201-PA 636 GI12201-PA 19..238 4..223 460 41.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24596-PA 278 GL24596-PA 1..278 1..278 1277 86 Plus
Dper\GL24595-PA 663 GL24595-PA 340..618 1..278 722 48.7 Plus
Dper\GL12745-PA 286 GL12745-PA 9..276 5..270 468 36.5 Plus
Dper\GL12744-PA 258 GL12744-PA 16..252 12..274 464 38.6 Plus
Dper\GL12746-PA 284 GL12746-PA 7..268 9..268 460 40.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23361-PA 278 GA23361-PA 1..278 1..278 1312 87.4 Plus
Dpse\GA21751-PA 699 GA21751-PA 376..654 1..278 723 48.7 Plus
Dpse\GA14281-PA 285 GA14281-PA 16..279 12..274 544 41.3 Plus
Dpse\GA28212-PA 286 GA28212-PA 9..276 5..270 470 36.5 Plus
Dpse\GA14279-PA 292 GA14279-PA 13..276 7..268 462 40.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22155-PA 592 GM22155-PA 271..544 6..278 689 47.4 Plus
Dsec\GM22157-PA 104 GM22157-PA 1..104 175..278 546 100 Plus
Dsec\GM22156-PA 129 GM22156-PA 1..125 1..160 544 75 Plus
Dsec\GM25568-PA 284 GM25568-PA 15..272 12..268 539 41.1 Plus
Dsec\GM25569-PA 284 GM25569-PA 1..272 1..268 508 39.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12132-PA 278 GD12132-PA 1..278 1..278 1474 99.3 Plus
Dsim\GD12131-PA 593 GD12131-PA 272..545 6..278 695 48.2 Plus
Dsim\GD14583-PA 284 GD14583-PA 15..272 12..268 540 41.1 Plus
Dsim\GD14584-PA 284 GD14584-PA 1..274 1..270 513 39.4 Plus
Dsim\GD14585-PA 288 GD14585-PA 8..274 6..270 468 38.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11436-PA 278 GJ11436-PA 1..278 1..278 1233 83.8 Plus
Dvir\GJ11434-PA 487 GJ11434-PA 194..462 1..268 700 51.1 Plus
Dvir\GJ11433-PA 304 GJ11433-PA 19..293 4..278 697 47.6 Plus
Dvir\GJ11435-PA 616 GJ11435-PA 305..579 5..278 654 47.3 Plus
Dvir\GJ13573-PA 285 GJ13573-PA 1..273 1..268 519 39.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17369-PA 279 GK17369-PA 5..279 4..278 1310 87.6 Plus
Dwil\GK20398-PA 704 GK20398-PA 328..602 5..278 726 50.2 Plus
Dwil\GK24473-PA 281 GK24473-PA 1..275 1..274 542 39.9 Plus
Dwil\GK24484-PA 290 GK24484-PA 18..271 17..268 463 38.6 Plus
Dwil\GK24463-PA 284 GK24463-PA 45..272 43..268 418 39 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22963-PA 278 GE22963-PA 1..278 1..278 1466 98.6 Plus
Dyak\GE22962-PA 603 GE22962-PA 282..555 6..278 700 47.4 Plus
Dyak\GE22351-PA 603 GE22351-PA 282..555 6..278 700 47.4 Plus
Dyak\GE22872-PA 284 GE22872-PA 15..272 12..268 534 40.7 Plus
Dyak\GE22876-PA 284 GE22876-PA 15..272 12..268 534 40.7 Plus