BDGP Sequence Production Resources |
Search the DGRC for RE10407
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 104 |
Well: | 7 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG9391-RA |
Protein status: | RE10407.pep: gold |
Preliminary Size: | 1047 |
Sequenced Size: | 1097 |
Gene | Date | Evidence |
---|---|---|
CG9391 | 2001-12-14 | Blastp of sequenced clone |
CG9391 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9391 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9391 | 2008-04-29 | Release 5.5 accounting |
CG9391 | 2008-08-15 | Release 5.9 accounting |
CG9391 | 2008-12-18 | 5.12 accounting |
1097 bp (1097 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071022
> RE10407.complete ATAGTTTAATTAAAACTTGCAACTTTTGATTTGTTAGCGGTTCATTGGGA GTCCAGAAATCACAGAGGCAGCACCACTGCAAAATGTCACACAACGTGGA CGTGGAAAAGTGCTTAGAGGTGGCCAGCAACCTGGTTTCCGAAGCCGGAA GGCTCATCGCTCGCAACAATGAGCAGCGACAGGACTTCGTTTGCAAGAGC AATGACATCGACTTGGTGACCCAAACAGACAAGGATGTGGAGCAGCTGCT GATGGACGGCATTCGTCGCCACTTTCCGGAGCACAAGTTCATCGGCGAGG AGGAGAGTAGCGGCGCGGAGGGTGTCAAGAAGCTGACCGATGAGCCCACC TGGATCATTGATCCCGTGGACGGCACCATGAACTTTGTGCACGCCTTTCC GCACTCTTGCATCTCCGTGGGTCTGAAGGTGAACAAGGTCACGGAGCTGG GCTTGGTCTACAATCCCATTCTAGAGCAACGCTTTACTGCGAGACGAGGG CACGGAGCCTTCTACAACGGGCGCAGGATCCACGTTAGCGGCCAGAAGGA ACTGGGCAAAGCGCTGGTTACCAGTGAATTCGGTACCACCCGGGACGAGG CCAAGATGAAGGTCGTGCATGAAAACTTCGAGAAGATGGCCAAAAAGGCG CATGGCCTACGGGTCCTGGGTTCGGCAGCTCTCAATATGTCGATGGTTGC TTTGGGAGCCGCCGACGCTAACTATGAATTTGGAATTCACGCCTGGGATG TGTGTGCCGGCGACTTGATTGTCCGGGAGGCCGGAGGCGTGGTCATCGAT CCTGCTGGCGGCGAATTCGACATCATGTCTCGAAGGGTCCTGGCGGCAGC CACACCAGAGTTGGCCCAAGAGATCTCCAAGGTGCTAACGCAGTTTAATC CCCTTCCTCGCGATGATTAAGAGCTGGCACTTGAACTTCCTATATATATA TATGTATATAAGTCGAAATGGGACTTAACTAACCAAAAGCATTTTAAATA TACCGACCATGTACCTAACAAACAAATTGACTACGCCTAGTCACGGATAT TCCAAATAAACAAATAACGATTGTTTCATGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 21255689..21256114 | 1080..655 | 2130 | 100 | Minus |
chr3L | 24539361 | chr3L | 21256175..21256543 | 655..287 | 1845 | 100 | Minus |
chr3L | 24539361 | chr3L | 21256799..21256950 | 152..1 | 745 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 21256593..21256729 | 288..152 | 685 | 100 | Minus |
chr3L | 24539361 | chr3L | 21258210..21258297 | 420..333 | 260 | 86.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 21266681..21267106 | 1080..655 | 2130 | 100 | Minus |
3L | 28110227 | 3L | 21267167..21267535 | 655..287 | 1845 | 100 | Minus |
3L | 28110227 | 3L | 21267791..21267942 | 152..1 | 745 | 99.3 | Minus |
3L | 28110227 | 3L | 21267585..21267721 | 288..152 | 685 | 100 | Minus |
3L | 28110227 | 3L | 21269202..21269289 | 420..333 | 260 | 86.4 | Minus |
3L | 28110227 | 3L | 15977335..15977429 | 331..425 | 190 | 80 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 21259781..21260206 | 1080..655 | 2130 | 100 | Minus |
3L | 28103327 | 3L | 21260267..21260635 | 655..287 | 1845 | 100 | Minus |
3L | 28103327 | 3L | 21260891..21261042 | 152..1 | 745 | 99.3 | Minus |
3L | 28103327 | 3L | 21260685..21260821 | 288..152 | 685 | 100 | Minus |
3L | 28103327 | 3L | 21262302..21262389 | 420..333 | 260 | 86.3 | Minus |
3L | 28103327 | 3L | 15970435..15970529 | 331..425 | 190 | 80 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 21256175..21256543 | 287..655 | 100 | <- | Minus |
chr3L | 21256595..21256728 | 153..286 | 100 | <- | Minus |
chr3L | 21256799..21256950 | 1..152 | 99 | Minus | |
chr3L | 21255688..21256113 | 656..1081 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9391-RA | 1..837 | 84..920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9391-RA | 1..837 | 84..920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9391-RA | 1..837 | 84..920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9391-RA | 1..837 | 84..920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9391-RA | 1..837 | 84..920 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9391-RA | 1..1080 | 1..1080 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9391-RA | 1..1080 | 1..1080 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9391-RA | 24..1103 | 1..1081 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9391-RA | 1..1080 | 1..1080 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9391-RA | 24..1103 | 1..1081 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21266680..21267105 | 656..1081 | 99 | <- | Minus |
3L | 21267167..21267535 | 287..655 | 100 | <- | Minus |
3L | 21267587..21267720 | 153..286 | 100 | <- | Minus |
3L | 21267791..21267942 | 1..152 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21266680..21267105 | 656..1081 | 99 | <- | Minus |
3L | 21267167..21267535 | 287..655 | 100 | <- | Minus |
3L | 21267587..21267720 | 153..286 | 100 | <- | Minus |
3L | 21267791..21267942 | 1..152 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21266680..21267105 | 656..1081 | 99 | <- | Minus |
3L | 21267167..21267535 | 287..655 | 100 | <- | Minus |
3L | 21267587..21267720 | 153..286 | 100 | <- | Minus |
3L | 21267791..21267942 | 1..152 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 21259780..21260205 | 656..1081 | 99 | <- | Minus |
arm_3L | 21260267..21260635 | 287..655 | 100 | <- | Minus |
arm_3L | 21260687..21260820 | 153..286 | 100 | <- | Minus |
arm_3L | 21260891..21261042 | 1..152 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 21259780..21260205 | 656..1081 | 99 | <- | Minus |
3L | 21260267..21260635 | 287..655 | 100 | <- | Minus |
3L | 21260687..21260820 | 153..286 | 100 | <- | Minus |
3L | 21260891..21261042 | 1..152 | 99 | Minus |
Translation from 83 to 919
> RE10407.hyp MSHNVDVEKCLEVASNLVSEAGRLIARNNEQRQDFVCKSNDIDLVTQTDK DVEQLLMDGIRRHFPEHKFIGEEESSGAEGVKKLTDEPTWIIDPVDGTMN FVHAFPHSCISVGLKVNKVTELGLVYNPILEQRFTARRGHGAFYNGRRIH VSGQKELGKALVTSEFGTTRDEAKMKVVHENFEKMAKKAHGLRVLGSAAL NMSMVALGAADANYEFGIHAWDVCAGDLIVREAGGVVIDPAGGEFDIMSR RVLAAATPELAQEISKVLTQFNPLPRDD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9391-PC | 278 | CG9391-PC | 1..278 | 1..278 | 1437 | 100 | Plus |
CG9391-PA | 278 | CG9391-PA | 1..278 | 1..278 | 1437 | 100 | Plus |
CG9389-PA | 596 | CG9389-PA | 275..548 | 6..278 | 667 | 47.8 | Plus |
CG17029-PB | 284 | CG17029-PB | 15..274 | 12..270 | 515 | 40.4 | Plus |
CG17029-PA | 284 | CG17029-PA | 15..274 | 12..270 | 515 | 40.4 | Plus |
Translation from 83 to 919
> RE10407.pep MSHNVDVEKCLEVASNLVSEAGRLIARNNEQRQDFVCKSNDIDLVTQTDK DVEQLLMDGIRRHFPEHKFIGEEESSGAEGVKKLTDEPTWIIDPVDGTMN FVHAFPHSCISVGLKVNKVTELGLVYNPILEQRFTARRGHGAFYNGRRIH VSGQKELGKALVTSEFGTTRDEAKMKVVHENFEKMAKKAHGLRVLGSAAL NMSMVALGAADANYEFGIHAWDVCAGDLIVREAGGVVIDPAGGEFDIMSR RVLAAATPELAQEISKVLTQFNPLPRDD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10177-PA | 277 | GF10177-PA | 1..277 | 1..278 | 1274 | 84.9 | Plus |
Dana\GF10176-PA | 639 | GF10176-PA | 346..601 | 24..278 | 622 | 44.1 | Plus |
Dana\GF24103-PA | 284 | GF24103-PA | 15..278 | 12..274 | 537 | 40.2 | Plus |
Dana\GF24104-PA | 284 | GF24104-PA | 1..278 | 1..274 | 507 | 39 | Plus |
Dana\GF24105-PA | 288 | GF24105-PA | 8..274 | 6..270 | 448 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13252-PA | 278 | GG13252-PA | 1..278 | 1..278 | 1444 | 96.4 | Plus |
Dere\GG13251-PA | 602 | GG13251-PA | 281..554 | 6..278 | 685 | 46.7 | Plus |
Dere\GG15938-PA | 284 | GG15938-PA | 1..272 | 1..268 | 538 | 40.4 | Plus |
Dere\GG15939-PA | 288 | GG15939-PA | 8..274 | 6..270 | 461 | 37.8 | Plus |
Dere\GG15937-PA | 284 | GG15937-PA | 46..274 | 43..270 | 438 | 40.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16522-PA | 278 | GH16522-PA | 1..278 | 1..278 | 1225 | 82.4 | Plus |
Dgri\GH16521-PA | 597 | GH16521-PA | 280..557 | 2..278 | 667 | 45.3 | Plus |
Dgri\GH14775-PA | 286 | GH14775-PA | 17..280 | 12..274 | 516 | 39.4 | Plus |
Dgri\GH14777-PA | 286 | GH14777-PA | 10..276 | 7..270 | 486 | 38.2 | Plus |
Dgri\GH14776-PA | 290 | GH14776-PA | 4..277 | 6..270 | 449 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9391-PC | 278 | CG9391-PC | 1..278 | 1..278 | 1437 | 100 | Plus |
CG9391-PA | 278 | CG9391-PA | 1..278 | 1..278 | 1437 | 100 | Plus |
CG9389-PA | 596 | CG9389-PA | 275..548 | 6..278 | 667 | 47.8 | Plus |
CG17029-PB | 284 | CG17029-PB | 15..274 | 12..270 | 515 | 40.4 | Plus |
CG17029-PA | 284 | CG17029-PA | 15..274 | 12..270 | 515 | 40.4 | Plus |
CG17028-PB | 284 | CG17028-PB | 1..272 | 1..268 | 490 | 39.3 | Plus |
CG17028-PA | 284 | CG17028-PA | 1..272 | 1..268 | 490 | 39.3 | Plus |
CG17027-PB | 288 | CG17027-PB | 8..272 | 6..268 | 455 | 37.7 | Plus |
CG17027-PA | 288 | CG17027-PA | 8..272 | 6..268 | 455 | 37.7 | Plus |
CG17026-PA | 284 | CG17026-PA | 46..272 | 43..268 | 410 | 39.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12203-PA | 278 | GI12203-PA | 1..278 | 1..278 | 1271 | 82 | Plus |
Dmoj\GI12201-PA | 636 | GI12201-PA | 358..623 | 4..268 | 682 | 49.6 | Plus |
Dmoj\GI12202-PA | 568 | GI12202-PA | 259..529 | 6..278 | 572 | 43.3 | Plus |
Dmoj\GI11877-PA | 283 | GI11877-PA | 9..273 | 7..270 | 531 | 40.4 | Plus |
Dmoj\GI11880-PA | 284 | GI11880-PA | 5..274 | 2..270 | 505 | 37.8 | Plus |
Dmoj\GI12201-PA | 636 | GI12201-PA | 19..238 | 4..223 | 460 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24596-PA | 278 | GL24596-PA | 1..278 | 1..278 | 1277 | 86 | Plus |
Dper\GL24595-PA | 663 | GL24595-PA | 340..618 | 1..278 | 722 | 48.7 | Plus |
Dper\GL12745-PA | 286 | GL12745-PA | 9..276 | 5..270 | 468 | 36.5 | Plus |
Dper\GL12744-PA | 258 | GL12744-PA | 16..252 | 12..274 | 464 | 38.6 | Plus |
Dper\GL12746-PA | 284 | GL12746-PA | 7..268 | 9..268 | 460 | 40.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23361-PA | 278 | GA23361-PA | 1..278 | 1..278 | 1312 | 87.4 | Plus |
Dpse\GA21751-PA | 699 | GA21751-PA | 376..654 | 1..278 | 723 | 48.7 | Plus |
Dpse\GA14281-PA | 285 | GA14281-PA | 16..279 | 12..274 | 544 | 41.3 | Plus |
Dpse\GA28212-PA | 286 | GA28212-PA | 9..276 | 5..270 | 470 | 36.5 | Plus |
Dpse\GA14279-PA | 292 | GA14279-PA | 13..276 | 7..268 | 462 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22155-PA | 592 | GM22155-PA | 271..544 | 6..278 | 689 | 47.4 | Plus |
Dsec\GM22157-PA | 104 | GM22157-PA | 1..104 | 175..278 | 546 | 100 | Plus |
Dsec\GM22156-PA | 129 | GM22156-PA | 1..125 | 1..160 | 544 | 75 | Plus |
Dsec\GM25568-PA | 284 | GM25568-PA | 15..272 | 12..268 | 539 | 41.1 | Plus |
Dsec\GM25569-PA | 284 | GM25569-PA | 1..272 | 1..268 | 508 | 39.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12132-PA | 278 | GD12132-PA | 1..278 | 1..278 | 1474 | 99.3 | Plus |
Dsim\GD12131-PA | 593 | GD12131-PA | 272..545 | 6..278 | 695 | 48.2 | Plus |
Dsim\GD14583-PA | 284 | GD14583-PA | 15..272 | 12..268 | 540 | 41.1 | Plus |
Dsim\GD14584-PA | 284 | GD14584-PA | 1..274 | 1..270 | 513 | 39.4 | Plus |
Dsim\GD14585-PA | 288 | GD14585-PA | 8..274 | 6..270 | 468 | 38.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11436-PA | 278 | GJ11436-PA | 1..278 | 1..278 | 1233 | 83.8 | Plus |
Dvir\GJ11434-PA | 487 | GJ11434-PA | 194..462 | 1..268 | 700 | 51.1 | Plus |
Dvir\GJ11433-PA | 304 | GJ11433-PA | 19..293 | 4..278 | 697 | 47.6 | Plus |
Dvir\GJ11435-PA | 616 | GJ11435-PA | 305..579 | 5..278 | 654 | 47.3 | Plus |
Dvir\GJ13573-PA | 285 | GJ13573-PA | 1..273 | 1..268 | 519 | 39.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17369-PA | 279 | GK17369-PA | 5..279 | 4..278 | 1310 | 87.6 | Plus |
Dwil\GK20398-PA | 704 | GK20398-PA | 328..602 | 5..278 | 726 | 50.2 | Plus |
Dwil\GK24473-PA | 281 | GK24473-PA | 1..275 | 1..274 | 542 | 39.9 | Plus |
Dwil\GK24484-PA | 290 | GK24484-PA | 18..271 | 17..268 | 463 | 38.6 | Plus |
Dwil\GK24463-PA | 284 | GK24463-PA | 45..272 | 43..268 | 418 | 39 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22963-PA | 278 | GE22963-PA | 1..278 | 1..278 | 1466 | 98.6 | Plus |
Dyak\GE22962-PA | 603 | GE22962-PA | 282..555 | 6..278 | 700 | 47.4 | Plus |
Dyak\GE22351-PA | 603 | GE22351-PA | 282..555 | 6..278 | 700 | 47.4 | Plus |
Dyak\GE22872-PA | 284 | GE22872-PA | 15..272 | 12..268 | 534 | 40.7 | Plus |
Dyak\GE22876-PA | 284 | GE22876-PA | 15..272 | 12..268 | 534 | 40.7 | Plus |