Clone RE10780 Report

Search the DGRC for RE10780

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:107
Well:80
Vector:pFlc-1
Associated Gene/TranscriptCG4729-RA
Protein status:RE10780.pep: gold
Preliminary Size:1677
Sequenced Size:1623

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4729 2002-10-01 Blastp of sequenced clone
CG4729 2003-01-01 Sim4 clustering to Release 3
CG4729 2008-04-29 Release 5.5 accounting
CG4729 2008-08-15 Release 5.9 accounting
CG4729 2008-12-18 5.12 accounting

Clone Sequence Records

RE10780.complete Sequence

1623 bp (1623 high quality bases) assembled on 2002-10-01

GenBank Submission: BT001546

> RE10780.complete
AAATATTGAAAAATACTAAAGGCAAAAGTGGCGATTTTCCGTTTGTTCAC
CGGTGTCATCGTCATTGCACTCGAACGGTCATACCGTTTGGCTTACAAAA
GAAAACAAATCAATTCGCACAAAAACATTGCCAAAAAGATCAAAATGGGT
TCCCTGGAGAAGCTGAAACAATTGAGACTGATACACCTGTGCATCGCGCT
CACCTTCTTTACCAGCGGGCTGTGCATCAACTTTATCCAGCTGCTGATGC
ACGTCTTTATCAAGCCCATAGACAAGCGACTCTTCCGCAAGTTGATGTAC
TATGCCTGCTATTCGCTTTACTCCCAACTTATCTTCGTGTCCGATTGGTA
TGCCGGCAGCAAGATGACTGTCTACATGGACAAGGAGGACTTCGAGAAGC
ATGCCGGCAAGGAACACGTCCTTCTGATCATGAACCATAAATACGAGATC
GATTGGCTCAACGGCTGGATGATCTGCGAAAAGTTGGGCGTGCTGGGCAA
CTGCAAGGCCTATGCGAAGAAGGCAATCCGCTACGTGCCCATCATCGGCT
GGGGCTGGTGGCTGGCCGAGTTCGTCTTCCTCAATCGAAACTTCGACCAG
GACAAGACCATCATCACCGAACAGCTCAAGGTGGTCTTCTCCTATCCCGA
TCCCACCTGGCTTTTGCTCAACGCCGAGGGCACTCGCTTCACTCCCGCCA
AGCACGAGGCATCCGTAAAATTCGCCCAGGAGAGGGGCATGACGGTGCTG
AAGCACCATTTGATCCCGCGCACCAAGGGATTCACCGCCAGCTTGGCACC
CATCCGCGGTCTCTGTCCGGTAATCTACGACATTAATCTAGCGTACAGGC
CCACAGATAAGACCCCCGCCACAATGCTGAGTTTGCTGCATGGAAAGAGC
GTGGAACCGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTTCCGGA
GGATGAGAAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGG
ACAAGATCATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCC
GGCATAAAGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGCTCACT
CGTGAACTTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACT
ACGTGATCACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCACCGCA
CTTTCCGTCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATCAACAA
GACGCAGATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGTCGCAA
AGTAACTTTCGAATTCGCATTTAGTTTCGATTGTCGTCGAACTCAATTAT
CTACAAATGACTTTGTAAAAGGCAGTCCTCTCACAAATCTCTCTGCTAAA
TGGATCAATTCGTGATTCCTATCCGGACGATTTAAAGTGTTTTGCATGTT
TTTCTTGTCTAAGTTTATAGTTACGAAGTAACTCCCGCACACTGGAGCCA
TCAATTTGCGTACGTAGTTGGTAGTTGTACACCTAAGTGGAAATTTAATT
GTTTGATCAATTGTATTTTGGCGAGCATTGCAATAATTAAATTAAACAGA
ACGTGGAAAAAAAAAAAAAAAAA

RE10780.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RA 1804 CG4729-RA 59..1663 1..1605 8025 100 Plus
CG4729-RC 1713 CG4729-RC 210..1676 139..1605 7335 100 Plus
CG4729-RB 1681 CG4729-RB 206..1672 139..1605 7335 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16373086..16373621 861..326 2635 99.4 Minus
chr3L 24539361 chr3L 16371527..16371912 1605..1220 1900 99.5 Minus
chr3L 24539361 chr3L 16372137..16372496 1219..860 1800 100 Minus
chr3L 24539361 chr3L 16373682..16373870 325..137 945 100 Minus
chr3L 24539361 chr3L 16375594..16375731 138..1 675 99.3 Minus
chr3L 24539361 chr3L 16369471..16369905 839..405 540 74.9 Minus
chr3L 24539361 chr3L 16369174..16369307 1064..931 325 82.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:33:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16383331..16383866 861..326 2680 100 Minus
3L 28110227 3L 16381772..16382157 1605..1220 1930 100 Minus
3L 28110227 3L 16382382..16382741 1219..860 1800 100 Minus
3L 28110227 3L 16383927..16384115 325..137 945 100 Minus
3L 28110227 3L 16385820..16385957 138..1 690 100 Minus
3L 28110227 3L 16379722..16380156 839..405 540 74.9 Minus
3L 28110227 3L 16379425..16379558 1064..931 325 82.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16376431..16376966 861..326 2680 100 Minus
3L 28103327 3L 16374872..16375257 1605..1220 1930 100 Minus
3L 28103327 3L 16375482..16375841 1219..860 1800 100 Minus
3L 28103327 3L 16377027..16377215 325..137 945 100 Minus
3L 28103327 3L 16378920..16379057 138..1 690 100 Minus
3L 28103327 3L 16372525..16372658 1064..931 325 82.8 Minus
3L 28103327 3L 16373055..16373256 606..405 260 75.2 Minus
3L 28103327 3L 16372929..16373039 732..622 240 81 Minus
3L 28103327 3L 16372822..16372910 839..751 175 79.7 Minus
Blast to na_te.dros performed on 2019-03-15 20:06:22 has no hits.

RE10780.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:07:10 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16371525..16371912 1220..1606 99 <- Minus
chr3L 16372137..16372494 862..1219 100 <- Minus
chr3L 16373086..16373621 326..861 99 <- Minus
chr3L 16373682..16373868 139..325 100 <- Minus
chr3L 16375594..16375731 1..138 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:53:27 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 1..1161 145..1305 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:13:12 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 1..1161 145..1305 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:06:40 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RE 28..1194 139..1305 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:04:16 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 1..1161 145..1305 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:45 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RE 28..1194 139..1305 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:35:47 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RA 1..1605 1..1606 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:13:12 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RA 1..1605 1..1606 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:40 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RA 1..1605 1..1605 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:04:16 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RA 1..1605 1..1606 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:45 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RA 1..1605 1..1605 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:07:10 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16381770..16382157 1220..1606 99 <- Minus
3L 16382382..16382739 862..1219 100 <- Minus
3L 16383331..16383866 326..861 100 <- Minus
3L 16383927..16384113 139..325 100 <- Minus
3L 16385820..16385957 1..138 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:07:10 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16381770..16382157 1220..1606 99 <- Minus
3L 16382382..16382739 862..1219 100 <- Minus
3L 16383331..16383866 326..861 100 <- Minus
3L 16383927..16384113 139..325 100 <- Minus
3L 16385820..16385957 1..138 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:07:10 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16381770..16382157 1220..1606 99 <- Minus
3L 16382382..16382739 862..1219 100 <- Minus
3L 16383331..16383866 326..861 100 <- Minus
3L 16383927..16384113 139..325 100 <- Minus
3L 16385820..16385957 1..138 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:40 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16374870..16375257 1220..1606 99 <- Minus
arm_3L 16375482..16375839 862..1219 100 <- Minus
arm_3L 16376431..16376966 326..861 100 <- Minus
arm_3L 16377027..16377213 139..325 100 <- Minus
arm_3L 16378920..16379057 1..138 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:35:58 Download gff for RE10780.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16374870..16375257 1220..1606 99 <- Minus
3L 16375482..16375839 862..1219 100 <- Minus
3L 16376431..16376966 326..861 100 <- Minus
3L 16377027..16377213 139..325 100 <- Minus
3L 16378920..16379057 1..138 100   Minus

RE10780.pep Sequence

Translation from 144 to 1304

> RE10780.pep
MGSLEKLKQLRLIHLCIALTFFTSGLCINFIQLLMHVFIKPIDKRLFRKL
MYYACYSLYSQLIFVSDWYAGSKMTVYMDKEDFEKHAGKEHVLLIMNHKY
EIDWLNGWMICEKLGVLGNCKAYAKKAIRYVPIIGWGWWLAEFVFLNRNF
DQDKTIITEQLKVVFSYPDPTWLLLNAEGTRFTPAKHEASVKFAQERGMT
VLKHHLIPRTKGFTASLAPIRGLCPVIYDINLAYRPTDKTPATMLSLLHG
KSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKIIDSFLETGSFFK
TSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVITSLLAANWTAFI
TALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAK*

RE10780.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10214-PA 386 GF10214-PA 1..386 1..386 1908 90.9 Plus
Dana\GF10215-PA 379 GF10215-PA 7..376 12..381 1278 63 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13455-PA 387 GG13455-PA 1..382 1..382 2041 99 Plus
Dere\GG13456-PA 379 GG13456-PA 1..376 7..381 1291 62.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15594-PA 387 GH15594-PA 1..380 1..380 1616 76.8 Plus
Dgri\GH15593-PA 383 GH15593-PA 3..380 6..383 1219 58.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Agpat3-PE 397 CG4729-PE 12..397 1..386 2043 100 Plus
Agpat3-PB 386 CG4729-PB 1..386 1..386 2043 100 Plus
Agpat3-PC 386 CG4729-PC 1..386 1..386 2043 100 Plus
Agpat3-PA 386 CG4729-PA 1..386 1..386 2043 100 Plus
Agpat4-PC 380 CG4753-PC 10..376 15..381 1268 62.7 Plus
Agpat4-PA 380 CG4753-PA 10..376 15..381 1268 62.7 Plus
Agpat4-PB 380 CG4753-PB 10..376 15..381 1268 62.7 Plus
Agpat3-PD 143 CG4729-PD 1..143 244..386 734 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16871-PA 388 GI16871-PA 1..383 1..383 1640 77.3 Plus
Dmoj\GI16870-PA 387 GI16870-PA 1..385 1..386 1120 53.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17998-PA 389 GL17998-PA 1..383 1..383 1852 88 Plus
Dper\GL17999-PA 383 GL17999-PA 1..383 1..386 1337 62.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18389-PA 389 GA18389-PA 1..383 1..383 1842 87.7 Plus
Dpse\GA18406-PA 383 GA18406-PA 1..383 1..386 1337 62.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24405-PA 386 GM24405-PA 1..386 1..386 2053 99 Plus
Dsec\GM24407-PA 378 GM24407-PA 1..377 7..382 1271 61.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12474-PA 386 GD12474-PA 1..386 1..386 2063 99.5 Plus
Dsim\GD12475-PA 380 GD12475-PA 1..367 7..372 1241 61.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12621-PA 388 GJ12621-PA 1..383 1..383 1607 76.2 Plus
Dvir\GJ12620-PA 337 GJ12620-PA 1..335 51..386 1140 59.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20785-PA 395 GK20785-PA 1..386 1..385 1709 80.3 Plus
Dwil\GK20796-PA 382 GK20796-PA 2..378 7..383 1397 66.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22556-PA 387 GE22556-PA 1..383 1..383 2047 99.2 Plus
Dyak\GE22903-PA 387 GE22903-PA 1..383 1..383 2047 99.2 Plus
Dyak\GE22557-PA 379 GE22557-PA 1..376 7..381 1268 62 Plus
Dyak\GE22904-PA 379 GE22904-PA 1..376 7..381 1267 62 Plus

RE10780.hyp Sequence

Translation from 144 to 1304

> RE10780.hyp
MGSLEKLKQLRLIHLCIALTFFTSGLCINFIQLLMHVFIKPIDKRLFRKL
MYYACYSLYSQLIFVSDWYAGSKMTVYMDKEDFEKHAGKEHVLLIMNHKY
EIDWLNGWMICEKLGVLGNCKAYAKKAIRYVPIIGWGWWLAEFVFLNRNF
DQDKTIITEQLKVVFSYPDPTWLLLNAEGTRFTPAKHEASVKFAQERGMT
VLKHHLIPRTKGFTASLAPIRGLCPVIYDINLAYRPTDKTPATMLSLLHG
KSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKIIDSFLETGSFFK
TSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVITSLLAANWTAFI
TALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAK*

RE10780.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-PB 386 CG4729-PB 1..386 1..386 2043 100 Plus
CG4729-PC 386 CG4729-PC 1..386 1..386 2043 100 Plus
CG4729-PA 386 CG4729-PA 1..386 1..386 2043 100 Plus
CG4729-PE 397 CG4729-PE 12..397 1..386 2043 100 Plus
CG4753-PC 380 CG4753-PC 10..376 15..381 1268 62.7 Plus