BDGP Sequence Production Resources |
Search the DGRC for RE10780
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 107 |
Well: | 80 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG4729-RA |
Protein status: | RE10780.pep: gold |
Preliminary Size: | 1677 |
Sequenced Size: | 1623 |
Gene | Date | Evidence |
---|---|---|
CG4729 | 2002-10-01 | Blastp of sequenced clone |
CG4729 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4729 | 2008-04-29 | Release 5.5 accounting |
CG4729 | 2008-08-15 | Release 5.9 accounting |
CG4729 | 2008-12-18 | 5.12 accounting |
1623 bp (1623 high quality bases) assembled on 2002-10-01
GenBank Submission: BT001546
> RE10780.complete AAATATTGAAAAATACTAAAGGCAAAAGTGGCGATTTTCCGTTTGTTCAC CGGTGTCATCGTCATTGCACTCGAACGGTCATACCGTTTGGCTTACAAAA GAAAACAAATCAATTCGCACAAAAACATTGCCAAAAAGATCAAAATGGGT TCCCTGGAGAAGCTGAAACAATTGAGACTGATACACCTGTGCATCGCGCT CACCTTCTTTACCAGCGGGCTGTGCATCAACTTTATCCAGCTGCTGATGC ACGTCTTTATCAAGCCCATAGACAAGCGACTCTTCCGCAAGTTGATGTAC TATGCCTGCTATTCGCTTTACTCCCAACTTATCTTCGTGTCCGATTGGTA TGCCGGCAGCAAGATGACTGTCTACATGGACAAGGAGGACTTCGAGAAGC ATGCCGGCAAGGAACACGTCCTTCTGATCATGAACCATAAATACGAGATC GATTGGCTCAACGGCTGGATGATCTGCGAAAAGTTGGGCGTGCTGGGCAA CTGCAAGGCCTATGCGAAGAAGGCAATCCGCTACGTGCCCATCATCGGCT GGGGCTGGTGGCTGGCCGAGTTCGTCTTCCTCAATCGAAACTTCGACCAG GACAAGACCATCATCACCGAACAGCTCAAGGTGGTCTTCTCCTATCCCGA TCCCACCTGGCTTTTGCTCAACGCCGAGGGCACTCGCTTCACTCCCGCCA AGCACGAGGCATCCGTAAAATTCGCCCAGGAGAGGGGCATGACGGTGCTG AAGCACCATTTGATCCCGCGCACCAAGGGATTCACCGCCAGCTTGGCACC CATCCGCGGTCTCTGTCCGGTAATCTACGACATTAATCTAGCGTACAGGC CCACAGATAAGACCCCCGCCACAATGCTGAGTTTGCTGCATGGAAAGAGC GTGGAACCGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTTCCGGA GGATGAGAAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGG ACAAGATCATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCC GGCATAAAGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGCTCACT CGTGAACTTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACT ACGTGATCACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCACCGCA CTTTCCGTCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATCAACAA GACGCAGATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGTCGCAA AGTAACTTTCGAATTCGCATTTAGTTTCGATTGTCGTCGAACTCAATTAT CTACAAATGACTTTGTAAAAGGCAGTCCTCTCACAAATCTCTCTGCTAAA TGGATCAATTCGTGATTCCTATCCGGACGATTTAAAGTGTTTTGCATGTT TTTCTTGTCTAAGTTTATAGTTACGAAGTAACTCCCGCACACTGGAGCCA TCAATTTGCGTACGTAGTTGGTAGTTGTACACCTAAGTGGAAATTTAATT GTTTGATCAATTGTATTTTGGCGAGCATTGCAATAATTAAATTAAACAGA ACGTGGAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16373086..16373621 | 861..326 | 2635 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 16371527..16371912 | 1605..1220 | 1900 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 16372137..16372496 | 1219..860 | 1800 | 100 | Minus |
chr3L | 24539361 | chr3L | 16373682..16373870 | 325..137 | 945 | 100 | Minus |
chr3L | 24539361 | chr3L | 16375594..16375731 | 138..1 | 675 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 16369471..16369905 | 839..405 | 540 | 74.9 | Minus |
chr3L | 24539361 | chr3L | 16369174..16369307 | 1064..931 | 325 | 82.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16383331..16383866 | 861..326 | 2680 | 100 | Minus |
3L | 28110227 | 3L | 16381772..16382157 | 1605..1220 | 1930 | 100 | Minus |
3L | 28110227 | 3L | 16382382..16382741 | 1219..860 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 16383927..16384115 | 325..137 | 945 | 100 | Minus |
3L | 28110227 | 3L | 16385820..16385957 | 138..1 | 690 | 100 | Minus |
3L | 28110227 | 3L | 16379722..16380156 | 839..405 | 540 | 74.9 | Minus |
3L | 28110227 | 3L | 16379425..16379558 | 1064..931 | 325 | 82.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16376431..16376966 | 861..326 | 2680 | 100 | Minus |
3L | 28103327 | 3L | 16374872..16375257 | 1605..1220 | 1930 | 100 | Minus |
3L | 28103327 | 3L | 16375482..16375841 | 1219..860 | 1800 | 100 | Minus |
3L | 28103327 | 3L | 16377027..16377215 | 325..137 | 945 | 100 | Minus |
3L | 28103327 | 3L | 16378920..16379057 | 138..1 | 690 | 100 | Minus |
3L | 28103327 | 3L | 16372525..16372658 | 1064..931 | 325 | 82.8 | Minus |
3L | 28103327 | 3L | 16373055..16373256 | 606..405 | 260 | 75.2 | Minus |
3L | 28103327 | 3L | 16372929..16373039 | 732..622 | 240 | 81 | Minus |
3L | 28103327 | 3L | 16372822..16372910 | 839..751 | 175 | 79.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16371525..16371912 | 1220..1606 | 99 | <- | Minus |
chr3L | 16372137..16372494 | 862..1219 | 100 | <- | Minus |
chr3L | 16373086..16373621 | 326..861 | 99 | <- | Minus |
chr3L | 16373682..16373868 | 139..325 | 100 | <- | Minus |
chr3L | 16375594..16375731 | 1..138 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4729-RB | 1..1161 | 145..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4729-RB | 1..1161 | 145..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4729-RE | 28..1194 | 139..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4729-RB | 1..1161 | 145..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4729-RE | 28..1194 | 139..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4729-RA | 1..1605 | 1..1606 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4729-RA | 1..1605 | 1..1606 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4729-RA | 1..1605 | 1..1605 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4729-RA | 1..1605 | 1..1606 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4729-RA | 1..1605 | 1..1605 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16381770..16382157 | 1220..1606 | 99 | <- | Minus |
3L | 16382382..16382739 | 862..1219 | 100 | <- | Minus |
3L | 16383331..16383866 | 326..861 | 100 | <- | Minus |
3L | 16383927..16384113 | 139..325 | 100 | <- | Minus |
3L | 16385820..16385957 | 1..138 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16381770..16382157 | 1220..1606 | 99 | <- | Minus |
3L | 16382382..16382739 | 862..1219 | 100 | <- | Minus |
3L | 16383331..16383866 | 326..861 | 100 | <- | Minus |
3L | 16383927..16384113 | 139..325 | 100 | <- | Minus |
3L | 16385820..16385957 | 1..138 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16381770..16382157 | 1220..1606 | 99 | <- | Minus |
3L | 16382382..16382739 | 862..1219 | 100 | <- | Minus |
3L | 16383331..16383866 | 326..861 | 100 | <- | Minus |
3L | 16383927..16384113 | 139..325 | 100 | <- | Minus |
3L | 16385820..16385957 | 1..138 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16374870..16375257 | 1220..1606 | 99 | <- | Minus |
arm_3L | 16375482..16375839 | 862..1219 | 100 | <- | Minus |
arm_3L | 16376431..16376966 | 326..861 | 100 | <- | Minus |
arm_3L | 16377027..16377213 | 139..325 | 100 | <- | Minus |
arm_3L | 16378920..16379057 | 1..138 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16374870..16375257 | 1220..1606 | 99 | <- | Minus |
3L | 16375482..16375839 | 862..1219 | 100 | <- | Minus |
3L | 16376431..16376966 | 326..861 | 100 | <- | Minus |
3L | 16377027..16377213 | 139..325 | 100 | <- | Minus |
3L | 16378920..16379057 | 1..138 | 100 | Minus |
Translation from 144 to 1304
> RE10780.pep MGSLEKLKQLRLIHLCIALTFFTSGLCINFIQLLMHVFIKPIDKRLFRKL MYYACYSLYSQLIFVSDWYAGSKMTVYMDKEDFEKHAGKEHVLLIMNHKY EIDWLNGWMICEKLGVLGNCKAYAKKAIRYVPIIGWGWWLAEFVFLNRNF DQDKTIITEQLKVVFSYPDPTWLLLNAEGTRFTPAKHEASVKFAQERGMT VLKHHLIPRTKGFTASLAPIRGLCPVIYDINLAYRPTDKTPATMLSLLHG KSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKIIDSFLETGSFFK TSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVITSLLAANWTAFI TALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10214-PA | 386 | GF10214-PA | 1..386 | 1..386 | 1908 | 90.9 | Plus |
Dana\GF10215-PA | 379 | GF10215-PA | 7..376 | 12..381 | 1278 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13455-PA | 387 | GG13455-PA | 1..382 | 1..382 | 2041 | 99 | Plus |
Dere\GG13456-PA | 379 | GG13456-PA | 1..376 | 7..381 | 1291 | 62.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15594-PA | 387 | GH15594-PA | 1..380 | 1..380 | 1616 | 76.8 | Plus |
Dgri\GH15593-PA | 383 | GH15593-PA | 3..380 | 6..383 | 1219 | 58.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Agpat3-PE | 397 | CG4729-PE | 12..397 | 1..386 | 2043 | 100 | Plus |
Agpat3-PB | 386 | CG4729-PB | 1..386 | 1..386 | 2043 | 100 | Plus |
Agpat3-PC | 386 | CG4729-PC | 1..386 | 1..386 | 2043 | 100 | Plus |
Agpat3-PA | 386 | CG4729-PA | 1..386 | 1..386 | 2043 | 100 | Plus |
Agpat4-PC | 380 | CG4753-PC | 10..376 | 15..381 | 1268 | 62.7 | Plus |
Agpat4-PA | 380 | CG4753-PA | 10..376 | 15..381 | 1268 | 62.7 | Plus |
Agpat4-PB | 380 | CG4753-PB | 10..376 | 15..381 | 1268 | 62.7 | Plus |
Agpat3-PD | 143 | CG4729-PD | 1..143 | 244..386 | 734 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16871-PA | 388 | GI16871-PA | 1..383 | 1..383 | 1640 | 77.3 | Plus |
Dmoj\GI16870-PA | 387 | GI16870-PA | 1..385 | 1..386 | 1120 | 53.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17998-PA | 389 | GL17998-PA | 1..383 | 1..383 | 1852 | 88 | Plus |
Dper\GL17999-PA | 383 | GL17999-PA | 1..383 | 1..386 | 1337 | 62.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18389-PA | 389 | GA18389-PA | 1..383 | 1..383 | 1842 | 87.7 | Plus |
Dpse\GA18406-PA | 383 | GA18406-PA | 1..383 | 1..386 | 1337 | 62.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24405-PA | 386 | GM24405-PA | 1..386 | 1..386 | 2053 | 99 | Plus |
Dsec\GM24407-PA | 378 | GM24407-PA | 1..377 | 7..382 | 1271 | 61.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12474-PA | 386 | GD12474-PA | 1..386 | 1..386 | 2063 | 99.5 | Plus |
Dsim\GD12475-PA | 380 | GD12475-PA | 1..367 | 7..372 | 1241 | 61.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12621-PA | 388 | GJ12621-PA | 1..383 | 1..383 | 1607 | 76.2 | Plus |
Dvir\GJ12620-PA | 337 | GJ12620-PA | 1..335 | 51..386 | 1140 | 59.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20785-PA | 395 | GK20785-PA | 1..386 | 1..385 | 1709 | 80.3 | Plus |
Dwil\GK20796-PA | 382 | GK20796-PA | 2..378 | 7..383 | 1397 | 66.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22556-PA | 387 | GE22556-PA | 1..383 | 1..383 | 2047 | 99.2 | Plus |
Dyak\GE22903-PA | 387 | GE22903-PA | 1..383 | 1..383 | 2047 | 99.2 | Plus |
Dyak\GE22557-PA | 379 | GE22557-PA | 1..376 | 7..381 | 1268 | 62 | Plus |
Dyak\GE22904-PA | 379 | GE22904-PA | 1..376 | 7..381 | 1267 | 62 | Plus |
Translation from 144 to 1304
> RE10780.hyp MGSLEKLKQLRLIHLCIALTFFTSGLCINFIQLLMHVFIKPIDKRLFRKL MYYACYSLYSQLIFVSDWYAGSKMTVYMDKEDFEKHAGKEHVLLIMNHKY EIDWLNGWMICEKLGVLGNCKAYAKKAIRYVPIIGWGWWLAEFVFLNRNF DQDKTIITEQLKVVFSYPDPTWLLLNAEGTRFTPAKHEASVKFAQERGMT VLKHHLIPRTKGFTASLAPIRGLCPVIYDINLAYRPTDKTPATMLSLLHG KSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKIIDSFLETGSFFK TSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVITSLLAANWTAFI TALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG4729-PB | 386 | CG4729-PB | 1..386 | 1..386 | 2043 | 100 | Plus |
CG4729-PC | 386 | CG4729-PC | 1..386 | 1..386 | 2043 | 100 | Plus |
CG4729-PA | 386 | CG4729-PA | 1..386 | 1..386 | 2043 | 100 | Plus |
CG4729-PE | 397 | CG4729-PE | 12..397 | 1..386 | 2043 | 100 | Plus |
CG4753-PC | 380 | CG4753-PC | 10..376 | 15..381 | 1268 | 62.7 | Plus |