Clone RE10813 Report

Search the DGRC for RE10813

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:108
Well:13
Vector:pFlc-1
Associated Gene/TranscriptCG31495-RA
Protein status:RE10813.pep: gold
Preliminary Size:3549
Sequenced Size:1706

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9931 2002-01-01 Sim4 clustering to Release 2
CG31495 2003-01-01 Sim4 clustering to Release 3
CG31495 2004-11-04 Blastp of sequenced clone
CG31495 2008-04-29 Release 5.5 accounting
CG31495 2008-08-15 Release 5.9 accounting
CG31495 2008-12-18 5.12 accounting

Clone Sequence Records

RE10813.complete Sequence

1706 bp (1706 high quality bases) assembled on 2004-11-04

GenBank Submission: BT021318

> RE10813.complete
GCAGTTATCGCAATCGATTTTAGGTGGATAACATAATATACAAAACCATT
TTGTAAAGAACAGCTGATACAATTTGACCATTTCATATCCAATATAATTT
CTCCATAAAAGAAGCCAACCCGGGCGCCAAGATGGTCAACATCACTTTAC
CCAACACTGAGGAGCGTGTGAACCTCTTAAAATCGCGCATCAACAGGCTG
GGTGACATTACGGTGGCCGGCGATGTTTGCGCACGCGAAATTGCAATGAA
AACCAAAAATTTCACGGAGGACGAGCTGTGCCAACTGGTCCGAGAAGCCC
TCCATGAAGCCATTGTCCGCACTCACGTCACCAGATGCCCGAAGGGCCTT
CAAGTCACTCAGGTCGATCTCCTGGCCGCGGTAAAGATCATTCAGCCACG
ATTTGGCCGGCAGGAGGAGACTCTCCAGCTGCTCATGCCATATGAATATC
TAGATCGTACCGCTTTCGATCCGAATGATCTCCTGTCCACCGGACGCCCA
AGATGGTCTTGCCATCTGGTCGAAGGTAAGCCCAAGTCAGGCCTAACTAC
GGTGGCCGCTCAAATGGCTTTGAAAACAGACTGCCCTTTTATAAAATACA
TCTCGTCGGCCGAATTGCTGGGACTTAGCGATTCCGAAAAATGCCAGAGA
ATACGGGAAGTCTTGGAGGACGCCTATGTTTCCAGGCGCAGCTGCGTCAT
CATTGACGACTTTGAGCGTGTCATTGGTTACGGCGCCCTGGGTAAGCGGT
ACTCCAAGGAGTTCCTGCAGAAGCTGACGGTTCTTCTGAAGAAACAACCG
CCCAACAGCCACGAGCTCATCATCATTTGCACAAGCAATCGTCTCGATGT
CCTGGAGGAACTGGGCTTGCTATCCGTTTTCACTTCAGTTCACAATGTGC
CAAATGTTTCCACGCCTAAAGAACTTATGGTCATAGTGGAAGCTTCAAAA
CGATTCGAGCCCGAGGAGCTACGCCAAATCGAGATCGCCATGGATGGCCG
CAACGTCTCCATTGGCATCAAACGGTTGCTTGACTTGATTGCGTGGGTGA
ATTCCCTAAATCCCGACCGTCGAGCTGCCAAATTGCTGAAGAAATTGGGC
GAAGCAATGGGATGGGTAGGGAACCATTCTAGTCCACTTGTACCTCAATA
CATTTAAGACGTTAGGTTAGGAAATGCAATATTGTATCTACAATTCCAGG
AAAATAATTCCAAGTGATTCCAAATAATTCAGTAATGCTTTATATTTAAA
AGAACCACGTAAGCATAAAAAAACCATCTAAAAAAATAATATTGCATTAT
TTTTTGGATGAACTTGCTTCCATTGCATTGCAATGTTCTTAAGACTAAAA
TGAACAGCCCGATAATGTGATTGCAAAGATACTAGATTATTATATTATAT
ATATATTATATATACACCAGGCCAGACCTCTCAGTGGCCTTCGCCTGCTG
TACGGAGAGCATTCCGTCCTCCAGGAGTTCGGTGACCGGTGGGCCCAACA
TCTCCTGGGCTGCTCCAAAGGCGGGCTTGATGTCGTTGTCCAATATATAT
ATATATACATAATTATATATATAATATATATTATATATTATATATATATA
TTATATTGTTCTAGTGTCTTTGGTGATTGGCATAACAAGTTTTATTACCA
TATTATATATATATAAGTAAAAATAAAGATATTTGAATTGCAAAAAAAAA
AAAAAA

RE10813.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31495-RA 1693 CG31495-RA 1..1693 1..1693 8465 100 Plus
Nsf2-RA 2907 Nsf2-RA 1707..1789 1496..1414 400 98.7 Minus
Nsf2.b 3111 Nsf2.b 1619..1701 1496..1414 400 98.7 Minus
Nsf2-RA 2907 Nsf2-RA 1626..1675 1544..1495 235 98 Minus
Nsf2.b 3111 Nsf2.b 1538..1587 1544..1495 235 98 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9663184..9664862 1691..1 8040 98.6 Minus
chr3R 27901430 chr3R 9660267..9660349 1414..1496 400 98.8 Plus
chr3R 27901430 chr3R 9660381..9660430 1495..1544 250 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:33:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13838237..13839930 1694..1 8470 100 Minus
3R 32079331 3R 13835312..13835394 1414..1496 400 98.8 Plus
3R 32079331 3R 13835426..13835475 1495..1544 235 98 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13579068..13580761 1694..1 8470 100 Minus
3R 31820162 3R 13576143..13576225 1414..1496 400 98.7 Plus
3R 31820162 3R 13576257..13576306 1495..1544 235 98 Plus
Blast to na_te.dros performed 2019-03-15 22:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Tc3 1743 Tc3 TC3 1743bp 239..318 1626..1545 206 75.6 Minus
Tc3 1743 Tc3 TC3 1743bp 259..333 1549..1624 196 77.9 Plus
frogger 2483 frogger FROGGER 2483bp 193..293 1149..1247 130 64.1 Plus
Circe 7450 Circe CIRC 7450bp 1897..1941 1282..1327 119 76.1 Plus

RE10813.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:37:42 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9663333..9664862 1..1542 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:53:30 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 1..1026 132..1157 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:28:44 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 1..1026 132..1157 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:27:08 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 1..1026 132..1157 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:12:42 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 1..1026 132..1157 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:04 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 1..1026 132..1157 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:32:21 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 1..1691 1..1691 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:28:43 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 1..1691 1..1691 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:27:08 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 1..1691 1..1691 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:12:42 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 1..1691 1..1691 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:04 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
CG31495-RA 5..1695 1..1691 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:42 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13838240..13839930 1..1691 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:42 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13838240..13839930 1..1691 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:42 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13838240..13839930 1..1691 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:27:08 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9663962..9665652 1..1691 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:49:19 Download gff for RE10813.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13579071..13580761 1..1691 100   Minus

RE10813.pep Sequence

Translation from 131 to 1156

> RE10813.pep
MVNITLPNTEERVNLLKSRINRLGDITVAGDVCAREIAMKTKNFTEDELC
QLVREALHEAIVRTHVTRCPKGLQVTQVDLLAAVKIIQPRFGRQEETLQL
LMPYEYLDRTAFDPNDLLSTGRPRWSCHLVEGKPKSGLTTVAAQMALKTD
CPFIKYISSAELLGLSDSEKCQRIREVLEDAYVSRRSCVIIDDFERVIGY
GALGKRYSKEFLQKLTVLLKKQPPNSHELIIICTSNRLDVLEELGLLSVF
TSVHNVPNVSTPKELMVIVEASKRFEPEELRQIEIAMDGRNVSIGIKRLL
DLIAWVNSLNPDRRAAKLLKKLGEAMGWVGNHSSPLVPQYI*

RE10813.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21411-PA 745 GF21411-PA 393..738 2..327 547 39.2 Plus
Dana\GF16398-PA 747 GF16398-PA 394..739 2..327 532 37.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17764-PA 745 GG17764-PA 393..738 2..327 540 38.9 Plus
Dere\GG17019-PA 751 GG17019-PA 398..743 2..327 534 39 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24638-PA 745 GH24638-PA 395..738 4..327 514 39.4 Plus
Dgri\GH14042-PA 750 GH14042-PA 397..742 2..327 506 37 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31495-PB 341 CG31495-PB 1..341 1..341 1738 100 Plus
CG31495-PA 341 CG31495-PA 1..341 1..341 1738 100 Plus
Nsf2-PC 752 CG33101-PC 398..743 2..327 573 39.9 Plus
Nsf2-PB 752 CG33101-PB 398..743 2..327 573 39.9 Plus
Nsf2-PA 752 CG33101-PA 398..743 2..327 573 39.9 Plus
comt-PB 745 CG1618-PB 393..738 2..327 522 38.6 Plus
comt-PA 745 CG1618-PA 393..738 2..327 522 38.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24416-PA 750 GI24416-PA 397..742 2..327 533 38.7 Plus
Dmoj\GI21685-PA 745 GI21685-PA 393..738 2..327 529 39.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24082-PA 742 GL24082-PA 389..734 2..327 535 38.4 Plus
Dper\GL13314-PA 745 GL13314-PA 393..738 2..327 535 38 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22832-PA 745 GA22832-PA 393..738 2..327 535 38 Plus
Dpse\GA17281-PA 742 GA17281-PA 389..734 2..327 535 38.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25904-PA 341 GM25904-PA 1..341 1..341 1728 95.3 Plus
Dsec\GM25905-PA 752 GM25905-PA 398..743 2..327 527 38.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20472-PA 282 GD20472-PA 1..273 1..273 1352 93.4 Plus
Dsim\GD20473-PA 669 GD20473-PA 325..660 12..327 529 39.6 Plus
Dsim\GD17110-PA 707 GD17110-PA 387..697 4..294 478 38.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15864-PA 745 GJ15864-PA 393..738 2..327 509 37.3 Plus
Dvir\GJ14275-PA 750 GJ14275-PA 397..742 2..327 509 37.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13058-PA 750 GK13058-PA 399..742 4..327 520 38.1 Plus
Dwil\GK18341-PA 745 GK18341-PA 393..738 2..327 506 38.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24412-PA 338 GE24412-PA 1..336 1..331 1326 77.4 Plus
Dyak\GE24411-PA 167 GE24411-PA 1..163 1..159 652 77.9 Plus
Dyak\GE24413-PA 751 GE24413-PA 398..743 2..327 546 39.3 Plus
Dyak\GE17054-PA 745 GE17054-PA 393..738 2..327 539 38.9 Plus

RE10813.hyp Sequence

Translation from 131 to 1156

> RE10813.hyp
MVNITLPNTEERVNLLKSRINRLGDITVAGDVCAREIAMKTKNFTEDELC
QLVREALHEAIVRTHVTRCPKGLQVTQVDLLAAVKIIQPRFGRQEETLQL
LMPYEYLDRTAFDPNDLLSTGRPRWSCHLVEGKPKSGLTTVAAQMALKTD
CPFIKYISSAELLGLSDSEKCQRIREVLEDAYVSRRSCVIIDDFERVIGY
GALGKRYSKEFLQKLTVLLKKQPPNSHELIIICTSNRLDVLEELGLLSVF
TSVHNVPNVSTPKELMVIVEASKRFEPEELRQIEIAMDGRNVSIGIKRLL
DLIAWVNSLNPDRRAAKLLKKLGEAMGWVGNHSSPLVPQYI*

RE10813.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31495-PB 341 CG31495-PB 1..341 1..341 1738 100 Plus
CG31495-PA 341 CG31495-PA 1..341 1..341 1738 100 Plus
Nsf2-PC 752 CG33101-PC 398..743 2..327 573 39.9 Plus
Nsf2-PB 752 CG33101-PB 398..743 2..327 573 39.9 Plus
Nsf2-PA 752 CG33101-PA 398..743 2..327 573 39.9 Plus