BDGP Sequence Production Resources |
Search the DGRC for RE10855
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 108 |
Well: | 55 |
Vector: | pFlc-1 |
Associated Gene/Transcript | MED21-RA |
Protein status: | RE10855.pep: gold |
Preliminary Size: | 647 |
Sequenced Size: | 788 |
Gene | Date | Evidence |
---|---|---|
CG17397 | 2001-12-14 | Blastp of sequenced clone |
CG17397 | 2002-01-01 | Sim4 clustering to Release 2 |
MED21 | 2008-04-29 | Release 5.5 accounting |
MED21 | 2008-08-15 | Release 5.9 accounting |
MED21 | 2008-12-18 | 5.12 accounting |
788 bp (788 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071027
> RE10855.complete ATATTATAAAAATCACCAACGGTCATTAATTATTAACTCTGTAGTAAAAT GGCGGATCGGCTTACACAATTGCAAGACACCGTTAATCAGCAAGCGGAGC ACTTCTGCAATGCTATTGGTGTAATTCAACAAACGTCCCTTCCAAGTAAA TTTGTTAATTTTGAACGCATTGGACCCCAAACGCCAATCCCATGTCCGCC GCAAGAAGACTATGCCCAATTATTTGCACAGTTAATTGCACGATGTGCTA AAGACATCGACACCTTAATCGAGTCTCTTCCAAATGAAGACAGCTCCATT GAACTCCAAAATTCTAGCCTTAAGAGGCTCGAGATCGAAAACCAGGGAAC TGCAAGAGACCTAGAGGAAGTAGTGCAAAAAGGCGAACTTTTGCTAGAAA AAATGCAGTATTCTTTGGAATGCATTGCTCAGGCTCAATTAGATATGCAA ATAACACTCAAACATGATTTACAATAGCTGCTTAACACATTTTTGTATAA AGGCAAATTATTTTTAAATTTAAGATAATGTATTTATTGCATTTTCGTTC GTGTTTACAGATCAAATGGGTTTTAGTATATACATATTGTTTTTATAAGT AAAGTATTTTAGCTTAATTTAGACCTAAACCATTTTGAACAGCACCTCTG ACCTCGTTGATATAATTTTTATAATAATTAATTATAGTTTTAAGTTATAA AAAAAACTATATATACTTACACGTACCCCACTTTGGATTTTATGAACAAA TTAAATTTATGTGCTCTAAAATAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 1214..1333 | 605..484 | 145 | 59.8 | Minus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 129..227 | 620..522 | 134 | 63.4 | Minus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 6637..6831 | 669..481 | 123 | 56.1 | Minus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 1867..1908 | 713..672 | 111 | 73.8 | Minus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 9749..9790 | 713..672 | 111 | 73.8 | Minus |
Stalker | 7256 | Stalker STALKER 7256bp | 6531..6723 | 669..481 | 108 | 55.1 | Minus |
Tirant | 8526 | Tirant TIRANT 8526bp | 530..592 | 664..722 | 107 | 68.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3LHet | 600380..601061 | 91..772 | 100 | <- | Minus |
chr3LHet | 601118..601180 | 28..90 | 100 | <- | Minus |
chr3LHet | 601285..601311 | 1..27 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED21-RA | 1..429 | 49..477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED21-RA | 1..429 | 49..477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED21-RB | 1..429 | 49..477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED21-RA | 1..429 | 49..477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED21-RB | 1..429 | 49..477 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED21-RB | 112..883 | 1..772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED21-RB | 112..883 | 1..772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED21-RB | 92..863 | 1..772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED21-RB | 112..883 | 1..772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED21-RB | 92..863 | 1..772 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 25114924..25115605 | 91..772 | 100 | <- | Minus |
3L | 25115662..25115724 | 28..90 | 100 | <- | Minus |
3L | 25115829..25115855 | 1..27 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 25114924..25115605 | 91..772 | 100 | <- | Minus |
3L | 25115662..25115724 | 28..90 | 100 | <- | Minus |
3L | 25115829..25115855 | 1..27 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 25114924..25115605 | 91..772 | 100 | <- | Minus |
3L | 25115662..25115724 | 28..90 | 100 | <- | Minus |
3L | 25115829..25115855 | 1..27 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3LHet | 600380..601061 | 91..772 | 100 | <- | Minus |
3LHet | 601118..601180 | 28..90 | 100 | <- | Minus |
3LHet | 601285..601311 | 1..27 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 25108024..25108705 | 91..772 | 100 | <- | Minus |
3L | 25108762..25108824 | 28..90 | 100 | <- | Minus |
3L | 25108929..25108955 | 1..27 | 100 | Minus |
Translation from 48 to 476
> RE10855.pep MADRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTPIPCP PQEDYAQLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQG TARDLEEVVQKGELLLEKMQYSLECIAQAQLDMQITLKHDLQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12027-PA | 142 | GG12027-PA | 1..142 | 1..142 | 686 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22363-PA | 142 | GH22363-PA | 1..142 | 1..142 | 619 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED21-PA | 142 | CG17397-PA | 1..142 | 1..142 | 721 | 100 | Plus |
MED21-PB | 142 | CG17397-PB | 1..142 | 1..142 | 721 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23617-PA | 142 | GI23617-PA | 1..142 | 1..142 | 612 | 85.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12347-PA | 144 | GL12347-PA | 1..138 | 1..138 | 618 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27478-PA | 144 | GA27478-PA | 1..138 | 1..138 | 618 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18771-PA | 142 | GM18771-PA | 1..142 | 1..142 | 722 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11954-PA | 142 | GD11954-PA | 1..142 | 1..142 | 722 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23591-PA | 142 | GJ23591-PA | 1..138 | 1..138 | 602 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14351-PA | 140 | GK14351-PA | 1..138 | 1..138 | 602 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25389-PA | 142 | GE25389-PA | 1..142 | 1..142 | 682 | 93.7 | Plus |
Translation from 48 to 476
> RE10855.hyp MADRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTPIPCP PQEDYAQLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQG TARDLEEVVQKGELLLEKMQYSLECIAQAQLDMQITLKHDLQ*