Clone RE10855 Report

Search the DGRC for RE10855

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:108
Well:55
Vector:pFlc-1
Associated Gene/TranscriptMED21-RA
Protein status:RE10855.pep: gold
Preliminary Size:647
Sequenced Size:788

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17397 2001-12-14 Blastp of sequenced clone
CG17397 2002-01-01 Sim4 clustering to Release 2
MED21 2008-04-29 Release 5.5 accounting
MED21 2008-08-15 Release 5.9 accounting
MED21 2008-12-18 5.12 accounting

Clone Sequence Records

RE10855.complete Sequence

788 bp (788 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071027

> RE10855.complete
ATATTATAAAAATCACCAACGGTCATTAATTATTAACTCTGTAGTAAAAT
GGCGGATCGGCTTACACAATTGCAAGACACCGTTAATCAGCAAGCGGAGC
ACTTCTGCAATGCTATTGGTGTAATTCAACAAACGTCCCTTCCAAGTAAA
TTTGTTAATTTTGAACGCATTGGACCCCAAACGCCAATCCCATGTCCGCC
GCAAGAAGACTATGCCCAATTATTTGCACAGTTAATTGCACGATGTGCTA
AAGACATCGACACCTTAATCGAGTCTCTTCCAAATGAAGACAGCTCCATT
GAACTCCAAAATTCTAGCCTTAAGAGGCTCGAGATCGAAAACCAGGGAAC
TGCAAGAGACCTAGAGGAAGTAGTGCAAAAAGGCGAACTTTTGCTAGAAA
AAATGCAGTATTCTTTGGAATGCATTGCTCAGGCTCAATTAGATATGCAA
ATAACACTCAAACATGATTTACAATAGCTGCTTAACACATTTTTGTATAA
AGGCAAATTATTTTTAAATTTAAGATAATGTATTTATTGCATTTTCGTTC
GTGTTTACAGATCAAATGGGTTTTAGTATATACATATTGTTTTTATAAGT
AAAGTATTTTAGCTTAATTTAGACCTAAACCATTTTGAACAGCACCTCTG
ACCTCGTTGATATAATTTTTATAATAATTAATTATAGTTTTAAGTTATAA
AAAAAACTATATATACTTACACGTACCCCACTTTGGATTTTATGAACAAA
TTAAATTTATGTGCTCTAAAATAAAAAAAAAAAAAAAA

RE10855.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
MED21.b 1225 MED21.b 448..1220 1..773 3865 100 Plus
MED21-RB 889 MED21-RB 112..884 1..773 3865 100 Plus
MED21.c 1854 MED21.c 1077..1849 1..773 3865 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3LHet 2555433 chr3LHet 600380..601064 772..88 3425 100 Minus
chr3LHet 2555433 chr3LHet 601118..601180 90..28 315 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:33:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 25114923..25115608 773..88 3430 100 Minus
3L 28110227 3L 25115662..25115724 90..28 315 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 25108023..25108708 773..88 3430 100 Minus
3L 28103327 3L 25108762..25108824 90..28 315 100 Minus
Blast to na_te.dros performed 2019-03-15 22:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1214..1333 605..484 145 59.8 Minus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 129..227 620..522 134 63.4 Minus
Stalker4 7359 Stalker4 STALKER4 7359bp 6637..6831 669..481 123 56.1 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 1867..1908 713..672 111 73.8 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 9749..9790 713..672 111 73.8 Minus
Stalker 7256 Stalker STALKER 7256bp 6531..6723 669..481 108 55.1 Minus
Tirant 8526 Tirant TIRANT 8526bp 530..592 664..722 107 68.3 Plus

RE10855.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:37:44 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
chr3LHet 600380..601061 91..772 100 <- Minus
chr3LHet 601118..601180 28..90 100 <- Minus
chr3LHet 601285..601311 1..27 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:53:35 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RA 1..429 49..477 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:20 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RA 1..429 49..477 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:27:13 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RB 1..429 49..477 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:35:35 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RA 1..429 49..477 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:07 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RB 1..429 49..477 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:41:34 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RB 112..883 1..772 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:20 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RB 112..883 1..772 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:27:13 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RB 92..863 1..772 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:35:35 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RB 112..883 1..772 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:07 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
MED21-RB 92..863 1..772 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:44 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
3L 25114924..25115605 91..772 100 <- Minus
3L 25115662..25115724 28..90 100 <- Minus
3L 25115829..25115855 1..27 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:44 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
3L 25114924..25115605 91..772 100 <- Minus
3L 25115662..25115724 28..90 100 <- Minus
3L 25115829..25115855 1..27 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:44 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
3L 25114924..25115605 91..772 100 <- Minus
3L 25115662..25115724 28..90 100 <- Minus
3L 25115829..25115855 1..27 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:27:13 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
3LHet 600380..601061 91..772 100 <- Minus
3LHet 601118..601180 28..90 100 <- Minus
3LHet 601285..601311 1..27 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:12:52 Download gff for RE10855.complete
Subject Subject Range Query Range Percent Splice Strand
3L 25108024..25108705 91..772 100 <- Minus
3L 25108762..25108824 28..90 100 <- Minus
3L 25108929..25108955 1..27 100   Minus

RE10855.pep Sequence

Translation from 48 to 476

> RE10855.pep
MADRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTPIPCP
PQEDYAQLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQG
TARDLEEVVQKGELLLEKMQYSLECIAQAQLDMQITLKHDLQ*

RE10855.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12027-PA 142 GG12027-PA 1..142 1..142 686 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22363-PA 142 GH22363-PA 1..142 1..142 619 87.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
MED21-PA 142 CG17397-PA 1..142 1..142 721 100 Plus
MED21-PB 142 CG17397-PB 1..142 1..142 721 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23617-PA 142 GI23617-PA 1..142 1..142 612 85.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12347-PA 144 GL12347-PA 1..138 1..138 618 88.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27478-PA 144 GA27478-PA 1..138 1..138 618 88.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18771-PA 142 GM18771-PA 1..142 1..142 722 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11954-PA 142 GD11954-PA 1..142 1..142 722 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23591-PA 142 GJ23591-PA 1..138 1..138 602 87 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14351-PA 140 GK14351-PA 1..138 1..138 602 85.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25389-PA 142 GE25389-PA 1..142 1..142 682 93.7 Plus

RE10855.hyp Sequence

Translation from 48 to 476

> RE10855.hyp
MADRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTPIPCP
PQEDYAQLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQG
TARDLEEVVQKGELLLEKMQYSLECIAQAQLDMQITLKHDLQ*

RE10855.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
MED21-PA 142 CG17397-PA 1..142 1..142 721 100 Plus
MED21-PB 142 CG17397-PB 1..142 1..142 721 100 Plus