Clone RE10864 Report

Search the DGRC for RE10864

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:108
Well:64
Vector:pFlc-1
Associated Gene/TranscriptATPsyn-beta-RA
Protein status:RE10864.pep: gold
Preliminary Size:2079
Sequenced Size:1746

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11154 2002-01-01 Sim4 clustering to Release 2
CG11154 2003-01-01 Sim4 clustering to Release 3
CG11154 2003-02-07 Blastp of sequenced clone
ATPsyn-beta 2008-04-29 Release 5.5 accounting
ATPsyn-beta 2008-08-15 Release 5.9 accounting
ATPsyn-beta 2008-12-18 5.12 accounting

Clone Sequence Records

RE10864.complete Sequence

1746 bp (1746 high quality bases) assembled on 2003-02-07

GenBank Submission: AY118367

> RE10864.complete
AATATATCGCGACTACCGATTTGCTCATCACTAGGACTTCTGCTCGCCCG
CACACTTCTCAGTTAGTTCGAGAAAAATGTTCGCGTTACGTGCTGCATCT
AAAGCCGATAAGAATTTGCTGCCATTCTTGGGGCAATTGTCTCGTAGCCA
TGCTGCCAAGGCTGCAAAGGCTGCAGCTGCCGCAAATGGAAAGATTGTGG
CCGTAATTGGTGCAGTCGTCGATGTCCAGTTTGATGATAACTTACCGCCC
ATTCTGAATGCCTTGGAAGTAGACAACCGTTCTCCTCGGCTCGTGCTAGA
GGTGGCCCAGCACTTGGGAGAAAATACCGTGCGCACTATCGCCATGGATG
GTACCGAAGGCTTGGTTCGCGGACAGAAGGTTCTCGATACTGGGTATCCT
ATCCGAATTCCAGTTGGTGCCGAAACACTAGGACGCATCATTAATGTTAT
TGGTGAACCCATTGATGAGCGTGGACCAATTGATACAGACAAGACCGCTG
CCATTCATGCTGAGGCTCCTGAATTCGTTCAGATGTCTGTTGAGCAAGAG
ATTCTTGTCACTGGAATCAAAGTCGTCGATCTCCTGGCTCCATACGCCAA
AGGTGGTAAAATTGGGTTGTTTGGAGGTGCCGGTGTGGGCAAAACTGTGT
TGATCATGGAGCTCATTAACAACGTGGCTAAAGCTCATGGTGGATACTCG
GTTTTCGCGGGAGTTGGTGAACGCACTCGTGAGGGAAACGATTTATACAA
TGAGATGATCGAGGGTGGTGTTATTTCACTAAAGGACAAGACCTCAAAGG
TGGCTCTCGTATATGGGCAAATGAACGAGCCGCCAGGTGCTCGTGCCCGT
GTTGCTCTAACTGGACTGACCGTTGCAGAGTACTTCCGTGATCAAGAAGG
ACAGGATGTGTTGCTGTTTATCGACAACATTTTCCGATTTACTCAAGCTG
GCTCAGAAGTGTCCGCTTTGTTGGGTCGTATTCCCTCAGCCGTCGGTTAC
CAGCCAACCTTGGCTACCGACATGGGTTCTATGCAGGAGCGTATTACCAC
CACCAAAAAGGGATCCATTACTTCTGTTCAGGCCATATATGTGCCCGCTG
ATGATTTGACCGATCCTGCTCCTGCTACTACATTCGCTCATTTGGATGCC
ACCACTGTACTCTCGCGTGCGATTGCCGAACTGGGTATTTACCCTGCTGT
GGATCCACTGGATTCGACTTCTCGAATCATGGATCCCAACATCATTGGCC
AAGAACACTATAACGTTGCCCGTGGTGTGCAGAAAATCTTGCAAGACTAC
AAATCACTTCAGGATATAATAGCCATTCTCGGAATGGATGAGTTGTCTGA
GGAAGATAAGCTCACAGTCGCTCGTGCTCGCAAGATTCAGCGTTTCTTGT
CGCAGCCATTCCAAGTTGCTGAAGTCTTCACCGGGCATGCTGGTAAACTA
GTGCCCCTGGAGCAAACTATAAAAGGTTTCTCAGCAATTCTAGCTGGGGA
CTACGACCATCTACCTGAAGTTGCTTTCTACATGGTCGGCCCAATCGAAG
AAGTTGTAGAAAAGGCTGACCGCCTGGCAAAGGAAGCTGCCTAGATAGGC
GTACTGGAAAAATCTTCAAAGTCAGCAAATCTATCATTGAATATTATGCA
TTGAATTTGTAATAAACTTTGTAAGATCAAATTAAATTCAATACAAGCGA
AGAAAAAGTTAATAAAACCTATTTAAACATAAAAAAAAAAAAAAAA

RE10864.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta.j 2547 ATPsyn-beta.j 325..2054 1..1730 8650 100 Plus
ATPsyn-beta.g 1833 ATPsyn-beta.g 530..1808 452..1730 6395 100 Plus
ATPsyn-beta.h 2158 ATPsyn-beta.h 530..1808 452..1730 6395 100 Plus
ATPsyn-beta.g 1833 ATPsyn-beta.g 26..479 1..454 2270 100 Plus
ATPsyn-beta.h 2158 ATPsyn-beta.h 26..479 1..454 2270 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 1053790..1055068 452..1730 6395 100 Plus
chr4 1351717 chr4 1053426..1053739 141..454 1570 100 Plus
chr3L 24539361 chr3L 16088556..16089475 543..1462 1120 74.8 Plus
chr4 1351717 chr4 1052328..1052467 1..140 700 100 Plus
chr3R 27901430 chr3R 15744707..15744789 690..772 205 83.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:33:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1033271..1034549 452..1730 6395 100 Plus
4 1348131 4 1032907..1033220 141..454 1570 100 Plus
3L 28110227 3L 16098790..16099709 543..1462 1120 74.8 Plus
4 1348131 4 1031814..1031953 1..140 700 100 Plus
3R 32079331 3R 19920789..19920871 690..772 205 83.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 1033271..1034549 452..1730 6395 100 Plus
4 1331231 4 1032907..1033220 141..454 1570 100 Plus
4 1331231 4 1031814..1031953 1..140 700 100 Plus
3L 28103327 3L 16092139..16092584 792..1237 625 76 Plus
3L 28103327 3L 16091890..16092110 543..763 325 76.4 Plus
3L 28103327 3L 16092645..16092809 1298..1462 315 79.3 Plus
3R 31820162 3R 19661620..19661702 690..772 205 83.1 Plus
Blast to na_te.dros performed 2019-03-16 07:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 627..694 1090..1157 115 63.2 Plus

RE10864.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:07:28 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 1053426..1053737 141..452 100 -> Plus
chr4 1052328..1052467 1..140 100 -> Plus
chr4 1053791..1055068 453..1730 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:53:37 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..1518 77..1594 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:53:28 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..1518 77..1594 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:21:32 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..1518 77..1594 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:44:33 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..1518 77..1594 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:28:11 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..1518 77..1594 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:07:53 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..1730 1..1730 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:53:28 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..1730 1..1730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:32 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RC 271..408 1..138 100 -> Plus
ATPsyn-beta-RC 429..2018 139..1730 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:44:33 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..1730 1..1730 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:28:11 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RC 271..408 1..138 100 -> Plus
ATPsyn-beta-RC 429..2018 139..1730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:07:28 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
4 1031814..1031953 1..140 100 -> Plus
4 1032907..1033218 141..452 100 -> Plus
4 1033272..1034549 453..1730 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:07:28 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
4 1031814..1031953 1..140 100 -> Plus
4 1032907..1033218 141..452 100 -> Plus
4 1033272..1034549 453..1730 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:07:28 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
4 1031814..1031953 1..140 100 -> Plus
4 1032907..1033218 141..452 100 -> Plus
4 1033272..1034549 453..1730 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:32 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1052440..1052579 1..140 100 -> Plus
arm_4 1053533..1053844 141..452 100 -> Plus
arm_4 1053898..1055175 453..1730 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:15:27 Download gff for RE10864.complete
Subject Subject Range Query Range Percent Splice Strand
4 1032907..1033218 141..452 100 -> Plus
4 1033272..1034549 453..1730 100   Plus
4 1031814..1031953 1..140 100 -> Plus

RE10864.pep Sequence

Translation from 76 to 1593

> RE10864.pep
MFALRAASKADKNLLPFLGQLSRSHAAKAAKAAAAANGKIVAVIGAVVDV
QFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ
KVLDTGYPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEF
VQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV
AKAHGGYSVFAGVGERTREGNDLYNEMIEGGVISLKDKTSKVALVYGQMN
EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG
RIPSAVGYQPTLATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPAPA
TTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGQEHYNVARG
VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEV
FTGHAGKLVPLEQTIKGFSAILAGDYDHLPEVAFYMVGPIEEVVEKADRL
AKEAA*

RE10864.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21882-PA 506 GF21882-PA 1..506 1..505 2558 97.8 Plus
Dana\GF23766-PA 638 GF23766-PA 106..570 38..501 1921 77.4 Plus
Dana\GF14214-PA 614 GF14214-PA 224..519 160..443 292 30 Plus
Dana\GF15651-PA 614 GF15651-PA 224..543 160..473 288 27.7 Plus
Dana\GF23001-PA 490 GF23001-PA 78..445 90..443 276 25.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16404-PA 505 GG16404-PA 1..505 1..505 2622 100 Plus
Dere\GG15949-PA 630 GG15949-PA 105..570 37..501 1886 75.8 Plus
Dere\GG23805-PA 734 GG23805-PA 340..635 160..443 297 29.2 Plus
Dere\GG23804-PA 614 GG23804-PA 224..519 160..443 292 30 Plus
Dere\GG10233-PA 614 GG10233-PA 224..543 160..473 288 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23965-PA 506 GH23965-PA 1..506 1..505 2564 98 Plus
Dgri\GH16852-PA 659 GH16852-PA 122..590 38..505 1893 75.5 Plus
Dgri\GH11385-PA 614 GH11385-PA 224..519 160..443 292 30 Plus
Dgri\GH10350-PA 614 GH10350-PA 224..543 160..473 291 28.3 Plus
Dgri\GH18893-PA 490 GH18893-PA 78..445 90..443 276 25.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsynbeta-PD 505 CG11154-PD 1..505 1..505 2520 100 Plus
ATPsynbeta-PA 505 CG11154-PA 1..505 1..505 2520 100 Plus
ATPsynbeta-PC 511 CG11154-PC 1..511 1..505 2503 98.8 Plus
ATPsynbetaL-PA 622 CG5389-PA 104..568 38..501 1824 76.1 Plus
Vha68-3-PA 743 CG5075-PA 349..644 160..443 297 29.4 Plus
Vha68-2-PF 614 CG3762-PF 224..519 160..443 292 29.8 Plus
Vha68-2-PE 614 CG3762-PE 224..519 160..443 292 29.8 Plus
Vha68-2-PD 614 CG3762-PD 224..519 160..443 292 29.8 Plus
Vha68-2-PC 614 CG3762-PC 224..519 160..443 292 29.8 Plus
Vha68-2-PB 614 CG3762-PB 224..519 160..443 292 29.8 Plus
Vha68-2-PA 614 CG3762-PA 224..519 160..443 292 29.8 Plus
Vha68-1-PB 614 CG12403-PB 224..519 160..443 286 29.5 Plus
Vha68-1-PA 614 CG12403-PA 224..519 160..443 286 29.5 Plus
Vha55-PC 490 CG17369-PC 65..445 73..443 285 26.3 Plus
Vha55-PA 490 CG17369-PA 65..445 73..443 285 26.3 Plus
Vha55-PB 490 CG17369-PB 65..445 73..443 285 26.3 Plus
blw-PA 552 CG3612-PA 104..416 76..384 249 24.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14045-PA 506 GI14045-PA 1..506 1..505 2552 97.4 Plus
Dmoj\GI13073-PA 618 GI13073-PA 72..540 38..505 1908 77 Plus
Dmoj\GI18088-PA 614 GI18088-PA 224..519 160..443 292 30 Plus
Dmoj\GI21237-PA 614 GI21237-PA 224..543 160..473 291 28 Plus
Dmoj\GI18089-PA 676 GI18089-PA 281..595 160..458 287 28.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18400-PA 506 GL18400-PA 1..506 1..505 2561 97.6 Plus
Dper\GL25088-PA 661 GL25088-PA 112..581 37..505 1880 75.2 Plus
Dper\GL24783-PA 614 GL24783-PA 224..543 160..473 282 27.4 Plus
Dper\GL24733-PA 620 GL24733-PA 224..519 160..443 280 28.2 Plus
Dper\GL13570-PA 490 GL13570-PA 78..445 90..443 276 25.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\ATPsyn-beta-PA 506 GA10801-PA 1..506 1..505 2561 97.6 Plus
Dpse\GA18845-PA 675 GA18845-PA 129..598 37..505 1878 74.9 Plus
Dpse\GA28953-PA 614 GA28953-PA 224..519 160..443 300 30.6 Plus
Dpse\GA11612-PA 614 GA11612-PA 224..543 160..473 282 27.4 Plus
Dpse\GA14484-PA 490 GA14484-PA 78..445 90..443 276 25.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25584-PA 625 GM25584-PA 106..571 37..501 1887 76 Plus
Dsec\GM13022-PA 387 GM13022-PA 1..350 1..350 1810 99.7 Plus
Dsec\GM10088-PA 743 GM10088-PA 349..644 160..443 298 29.2 Plus
Dsec\GM10085-PA 614 GM10085-PA 224..519 160..443 292 30 Plus
Dsec\GM25943-PA 614 GM25943-PA 224..543 160..473 287 27.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ATPsyn-beta-PA 439 GD24417-PA 22..439 88..505 2172 99.8 Plus
Dsim\GD23861-PA 758 GD23861-PA 349..659 160..443 298 28.3 Plus
Dsim\Vha68-1-PA 614 GD22093-PA 224..543 160..473 287 27.7 Plus
Dsim\GD20555-PA 490 GD20555-PA 78..445 90..443 276 25.9 Plus
Dsim\GD23860-PA 517 GD23860-PA 214..381 160..328 194 32.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\ATPsyn-beta-PA 506 GJ13622-PA 1..506 1..505 2528 96.2 Plus
Dvir\GJ13823-PA 611 GJ13823-PA 43..511 38..505 1890 76 Plus
Dvir\GJ16804-PA 614 GJ16804-PA 224..519 160..443 294 30.3 Plus
Dvir\GJ16815-PA 678 GJ16815-PA 283..578 160..443 285 29.6 Plus
Dvir\GJ11069-PA 614 GJ11069-PA 224..543 160..473 284 27.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13685-PA 506 GK13685-PA 1..506 1..505 2539 97 Plus
Dwil\GK24170-PA 685 GK24170-PA 119..583 38..501 1880 75.1 Plus
Dwil\GK13686-PA 114 GK13686-PA 1..93 227..320 422 91.5 Plus
Dwil\GK15309-PA 729 GK15309-PA 334..629 160..443 298 29.7 Plus
Dwil\GK15307-PA 614 GK15307-PA 224..519 160..443 292 30 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ATPsyn-beta-PA 505 GE14564-PA 1..505 1..505 2619 99.8 Plus
Dyak\GE23170-PA 627 GE23170-PA 105..570 37..501 1883 75.8 Plus
Dyak\GE22293-PA 627 GE22293-PA 105..570 37..501 1880 75.5 Plus
Dyak\GE18611-PA 743 GE18611-PA 349..644 160..443 297 29 Plus
Dyak\GE18610-PA 614 GE18610-PA 224..519 160..443 292 30 Plus

RE10864.hyp Sequence

Translation from 76 to 1593

> RE10864.hyp
MFALRAASKADKNLLPFLGQLSRSHAAKAAKAAAAANGKIVAVIGAVVDV
QFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ
KVLDTGYPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEF
VQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV
AKAHGGYSVFAGVGERTREGNDLYNEMIEGGVISLKDKTSKVALVYGQMN
EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG
RIPSAVGYQPTLATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPAPA
TTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGQEHYNVARG
VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEV
FTGHAGKLVPLEQTIKGFSAILAGDYDHLPEVAFYMVGPIEEVVEKADRL
AKEAA*

RE10864.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta-PD 505 CG11154-PD 1..505 1..505 2520 100 Plus
ATPsyn-beta-PA 505 CG11154-PA 1..505 1..505 2520 100 Plus
ATPsyn-beta-PC 511 CG11154-PC 1..511 1..505 2503 98.8 Plus
ms(3)72Dt-PA 622 CG5389-PA 104..568 38..501 1824 76.1 Plus
Vha68-3-PA 743 CG5075-PA 349..644 160..443 297 29.4 Plus