BDGP Sequence Production Resources |
Search the DGRC for RE10877
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 108 |
Well: | 77 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG17683-RC |
Protein status: | RE10877.pep: gold |
Sequenced Size: | 1855 |
Gene | Date | Evidence |
---|---|---|
CG17683-RC | 2010-11-11 | Gleaning Pick By Joe Carlson |
1855 bp assembled on 2011-01-03
GenBank Submission: BT125993.1
> RE10877.complete GTTCCACAATTACCGCTATGTTTTGACGATAGCTTGGCTCACTGCACTAA ATATTTGAATAAGTTCAGAAAGCGGTTTGGTGAATATATAAAATAAAAAG TTAAATATTATTTATTACGAAAACCATGTCGAGGTTGAGCAGAGCGCTGC AGCTTACAGATATAGATGATTTTATTACGCCCTCACAGCCCGTGCAAATA GATAAGGCAAGGTCAAAGACTGGGGCAAAGATAAAGATAAAAGGTGACGG CTGCTTTGAGGAATCAGAGAGTGGAAATCTAAAACTTAATAAAGTTGATA TTTCTCTGCAAGACTGTCTTGCGTGTTCTGGTTGCATCACTTCAGCTGAA GAAGTCCTTATCACGCAGCAGAGCCGAGAAGAGTTGCTTAAGGTCCTTCA AGAGAATTCAAAGAATAAGGCCTCTGAAGACTGGGATAACGTGCGTACGA TCGTGTTCACCCTTGCCACCCAGCCTATACTAAGCTTAGCCTATCGCTAT CAGATAGGTGTGGAGGATGCTGCCCGTCATCTTAATGGGTATTTTCGCAG TTTGGGTGCCGACTATGTTTTGTCCACTAAGGTGGCGGACGATATTGCGC TGCTCGAATGTCGTCAAGAATTTGTAGATAGGTACCGCGAAAATGAGAAC TTGACCATGCTTAGCTCCTCTTGTCCGGGGTGGGTTTGTTACGCGGAGAA AACACACGGAAACTTCTTATTGCCTTACGTTTCCACGACCCGATCTCCTC AGCAAATAATGGGAGTGCTTGTGAAGCAAATCCTTGCCGATAAGATGAAT GTTCCTGCGTCACGAATCTACCATGTGACCGTGATGCCTTGCTACGACAA GAAGCTTGAGGCCTCTCGAGAGGACTTTTTCAGCAAGGCAAATAACTCAC GCGACGTAGACTGTGTAATCACTTCAGTTGAGGTGGAACAGTTGCTTAGT GAGGCTCAGCAGCCGCTGTCGCAGTACGATCTCCTTGATTTAGACTGGCC ATGGTCTAATGTACGCCCAGAATTCATGGTATGGGCTCACGAGAAGACGC TATCTGGCGGTTACGCAGAACACATATTTAAGTACGCCGCAAAACATATT TTCAACGAAGATTTAAAAACAGAGTTGGAATTCAAACAGCTCAAAAACCG CGACTTTAGAGAAATTATACTTAAACAGAATGGCAAAACTGTCCTGAAAT TTGCAATTGCTAACGGTTTCCGGAACATACAAAACTTGGTACAAAAACTG AAGCGTGAAAAGGTATCAAATTACCACTTTGTTGAGGTAATGGCCTGTCC CTCGGGCTGTATAAACGGAGGAGCACAAATACGTCCCACTACCGGACAGC ACGTTCGCGAGCTTACCCGGAAACTGGAGGAATTATACCAGAATCTTCCA CGGTCCGAACCCGAAAACTCCTTAACAAAACATATTTACAATGACTTTTT AGACGGCTTTCAAAGTGATAAATCATATGACGTGCTGCACACCCGTTACC ATGATGTAGTATCTGAGCTCAGTATATCGCTTAATATAAATTGGTAAACG TATTGTGCTTGATTATCTCTTTTAGTATATCGACAGTTTCGGTAAAGGAA TAAGGCCCACAAACAAATATTTAAAATTAAAAAAAAAAAACTCATTTAAA CGGGGTGAGATTAGTGACAATACCGTTTTAAACCCAAAAACTGTATGAAT AACGAATAATATGATAAAATAGATTTTTCATTTATTTATAAACTATTTTC GGGAAATCTAAAATTTTCAAATAAAAAAATTGTTCAGTCTGGGCTGTTTA ATAAAAAATGGAGGTACCAGTAGAAAAAAAAAAAAAAATAAAAAAAAAAA AAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19538..20436 | 925..1824 | 4450 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 18824..19483 | 268..927 | 3300 | 100 | Plus |
chr2R | 21145070 | chr2R | 18441..18628 | 1..188 | 940 | 100 | Plus |
chr2R | 21145070 | chr2R | 18690..18772 | 187..269 | 415 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 4132034..4132932 | 925..1824 | 4450 | 99.9 | Plus |
2R | 25286936 | 2R | 4131320..4131979 | 268..927 | 3300 | 100 | Plus |
2R | 25286936 | 2R | 4130937..4131124 | 1..188 | 940 | 100 | Plus |
2R | 25286936 | 2R | 4131186..4131268 | 187..269 | 415 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 4133233..4134131 | 925..1824 | 4460 | 99.8 | Plus |
2R | 25260384 | 2R | 4132519..4133178 | 268..927 | 3300 | 100 | Plus |
2R | 25260384 | 2R | 4132136..4132323 | 1..188 | 940 | 100 | Plus |
2R | 25260384 | 2R | 4132385..4132467 | 187..269 | 415 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 18441..18628 | 1..188 | 100 | -> | Plus |
chr2R | 18692..18772 | 189..269 | 100 | -> | Plus |
chr2R | 18826..19483 | 270..927 | 100 | -> | Plus |
chr2R | 19541..20435 | 928..1823 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17683-RC | 1..1422 | 126..1547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17683-RC | 1..1422 | 126..1547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17683-RC | 1..1422 | 126..1547 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17683-RC | 1..1822 | 1..1823 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17683-RC | 1..1785 | 38..1823 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17683-RC | 1..1785 | 38..1823 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 4130937..4131124 | 1..188 | 100 | -> | Plus |
2R | 4131188..4131268 | 189..269 | 100 | -> | Plus |
2R | 4131322..4131979 | 270..927 | 100 | -> | Plus |
2R | 4132037..4132931 | 928..1823 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 4130937..4131124 | 1..188 | 100 | -> | Plus |
2R | 4131188..4131268 | 189..269 | 100 | -> | Plus |
2R | 4131322..4131979 | 270..927 | 100 | -> | Plus |
2R | 4132037..4132931 | 928..1823 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 4130937..4131124 | 1..188 | 100 | -> | Plus |
2R | 4131188..4131268 | 189..269 | 100 | -> | Plus |
2R | 4131322..4131979 | 270..927 | 100 | -> | Plus |
2R | 4132037..4132931 | 928..1823 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 18442..18629 | 1..188 | 100 | -> | Plus |
arm_2R | 18693..18773 | 189..269 | 100 | -> | Plus |
arm_2R | 18827..19484 | 270..927 | 100 | -> | Plus |
arm_2R | 19542..20436 | 928..1823 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 4132521..4133178 | 270..927 | 100 | -> | Plus |
2R | 4133236..4134130 | 928..1823 | 99 | Plus | |
2R | 4132136..4132323 | 1..188 | 100 | -> | Plus |
2R | 4132387..4132467 | 189..269 | 100 | -> | Plus |
Translation from 125 to 1546
> RE10877.hyp MSRLSRALQLTDIDDFITPSQPVQIDKARSKTGAKIKIKGDGCFEESESG NLKLNKVDISLQDCLACSGCITSAEEVLITQQSREELLKVLQENSKNKAS EDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSLGADYVLS TKVADDIALLECRQEFVDRYRENENLTMLSSSCPGWVCYAEKTHGNFLLP YVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKKLEASRED FFSKANNSRDVDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPWSNVRPEF MVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFREIILK QNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCINGGA QIRPTTGQHVRELTRKLEELYQNLPRSEPENSLTKHIYNDFLDGFQSDKS YDVLHTRYHDVVSELSISLNINW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17683-PC | 473 | CG17683-PC | 1..473 | 1..473 | 2462 | 100 | Plus |
CG17683-PA | 477 | CG17683-PA | 1..477 | 1..473 | 2447 | 99.2 | Plus |
CG17683-PD | 430 | CG17683-PD | 5..430 | 48..473 | 2223 | 99.8 | Plus |
CG17683-PE | 296 | CG17683-PE | 1..296 | 178..473 | 1567 | 100 | Plus |
Translation from 125 to 1546
> RE10877.pep MSRLSRALQLTDIDDFITPSQPVQIDKARSKTGAKIKIKGDGCFEESESG NLKLNKVDISLQDCLACSGCITSAEEVLITQQSREELLKVLQENSKNKAS EDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSLGADYVLS TKVADDIALLECRQEFVDRYRENENLTMLSSSCPGWVCYAEKTHGNFLLP YVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKKLEASRED FFSKANNSRDVDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPWSNVRPEF MVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFREIILK QNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCINGGA QIRPTTGQHVRELTRKLEELYQNLPRSEPENSLTKHIYNDFLDGFQSDKS YDVLHTRYHDVVSELSISLNINW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22738-PA | 476 | GF22738-PA | 1..476 | 1..473 | 1806 | 69 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21400-PA | 477 | GG21400-PA | 1..477 | 1..473 | 2231 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10760-PA | 476 | GH10760-PA | 1..476 | 1..473 | 1863 | 70.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17683-PC | 473 | CG17683-PC | 1..473 | 1..473 | 2462 | 100 | Plus |
CG17683-PA | 477 | CG17683-PA | 1..477 | 1..473 | 2447 | 99.2 | Plus |
CG17683-PD | 430 | CG17683-PD | 5..430 | 48..473 | 2223 | 99.8 | Plus |
CG17683-PE | 296 | CG17683-PE | 1..296 | 178..473 | 1567 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11683-PA | 476 | GI11683-PA | 1..476 | 1..473 | 1922 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21135-PA | 477 | GL21135-PA | 1..477 | 1..473 | 1950 | 75.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA29080-PA | 477 | GA29080-PA | 1..477 | 1..473 | 1950 | 75.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20417-PA | 478 | GM20417-PA | 1..478 | 1..473 | 2446 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17698-PA | 288 | GD17698-PA | 1..268 | 1..264 | 1360 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13047-PA | 476 | GJ13047-PA | 1..476 | 1..473 | 1911 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14772-PA | 477 | GK14772-PA | 1..477 | 1..473 | 1940 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22682-PA | 477 | GE22682-PA | 1..477 | 1..473 | 2291 | 88.3 | Plus |