Clone RE10908 Report

Search the DGRC for RE10908

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:109
Well:8
Vector:pFlc-1
Associated Gene/TranscriptCG8613-RA
Protein status:RE10908.pep: gold
Preliminary Size:2555
Sequenced Size:2999

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8613 2003-01-01 Sim4 clustering to Release 3
CG8613 2005-01-26 Blastp of sequenced clone
CG8613 2008-04-29 Release 5.5 accounting
CG8613 2008-08-15 Release 5.9 accounting
CG8613 2008-12-18 5.12 accounting

Clone Sequence Records

RE10908.complete Sequence

2999 bp (2999 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021315

> RE10908.complete
GGTGCCAGCCCTATGCCGATAAGCTAAACAATATTAAAAACATTGGTCAA
TTCGCGTCGATTGCACACGTTGCACTTTTGTTGGCATTGGACGAGGTCGA
GTGAAAGCACAGCGCAAGCCCCGAGAATCCCGATTCGTTTGCTATGTTCA
GGGTCAGGCCGCTCCTCCCCAGGATACGAAGCTCCCTGCAAACGACCTTG
AAACTCCAAGCAGATACATCGCAATCCGAATCCGAATCGTTCCGTCGGAA
CCTACGACTCCTACACAACAGTTGTCGTAGTCGCCCTGTGAGCAACCAGA
AATTCCGCACAATGGCCACCGGAGGAGAAGCATCCAAGGAAGTGTCCAAA
GAGGAACCCGCCAAGCAGGGCAATCGCTTGGTTGCCTCGAAGTCGCCATA
TCTCTTGCAGCATGCCTACAATCCAGTGGACTGGTACCCGTGGGGCGAGG
AGGCTTTCGAGAAGGCCCGCAGCGAGAACAAAATCATCTTCTTGTCAGTG
GGCTACTCCACCTGTCACTGGTGCCATGTAATGGAGCACGAATCGTTTGA
GAACCCGGAAACGGCTGCGATTATGAACGAAAACTTTGTAAACATCAAGG
TGGATCGGGAAGAGCGACCGGACATCGATAAGATATACATGCAGTTCCTA
CTGATGTCCAAGGGCAGTGGTGGTTGGCCGATGAGTGTGTGGTTAACACC
CACTTTGGCTCCACTAGTGGCGGGAACTTACTTCCCACCCAAATCCCGCT
ATGGAATGCCCTCATTTAACACTGTTCTTAAATCCATTGCTAGGAAGTGG
GAAACCGACAAGGAGTCCCTTCTTGCAACCGGATCTTCATTGCTCTCTGC
TTTACAGAAGAACCAGGACGCTTCGGCTGTGCCAGAAGCGGCATTTGGAG
CGGGAAGTGCTATTGAAAAGCTGAGCGAAGCCATCAACGTTCATAGGCAG
CGATTCGATCAGACCCATGGAGGATTTGGCTCAGAGCCCAAGTTTCCGGA
GGTGCCACGTCTCAACTTTCTTTTCCACGGCTATCTCGTCACCAAGGATC
CGGATGTTCTGGACATGGTGATTGAAACACTGACTCAAATTGGAAAGGGT
GGTATACATGACCACATTTTTGGCGGCTTTGCTCGCTACGCCACCACTCA
GGATTGGCACAACGTCCACTTTGAGAAGATGCTCTATGATCAGGGTCAAC
TAATGATGGCCTTTGCCAATGCCTACAAGGTGACCAGGGACGAAATATAT
TTGCGCTATGCAGATAAAATCCACAAGTACTTGATTAAGGACCTACGTCA
TCCTTTAGGGGGATTCTATGCTGGTGAGGACGCGGACTCCCTGCCTACCC
ACGAAGATAAAGTAAAGGTAGAGGGAGCATTCTACGCTTGGACCTGGGAC
GAAATTCAAGCTGCATTCAAGGATCAGGCGCAGCGTTTTGACGACATTAC
GCCCGAGCGGGCTTTTGAAATATATGCTTACCACTACGGTCTTAAGCCAC
CGGGTAATGTTCCAGCCTACAGCGATCCCCATGGTCATCTCACTGGCAAG
AACATTCTAATCGTACGAGGATCAGAGGAGGACACCTGCGCTAACTTTAA
GTTGGAGGAGGATCGATTTAAGAAGCTGCTGGCCACAACCAATGATATAT
TGCACGTTATCCGGGATAAGCGACCGCGTCCGCATCTGGACACAAAGATT
ATATGCGCATGGAACGGTCTGGTGTTGTCGGGACTCTGCAAGCTAGGCAA
TTGCTATTCCGCCAACAGGGAGCAGTATATGCAGACAGCAAAGGAACTTC
TTGATTTCCTTCGCAAGGAAATGTATGATCCGGAACAGAAGCTGCTCATC
CGTTCGTGCTATGGTGTGGCCGTGGGTGATGAAACCCTGGAGAAGAATGC
ATCGCAAATCGATGGGTTCCTTGATGACTATGCGTTCCTCATCAAGGGCT
TGCTGGACTACTACAAAGCTACACTCGACGTAGATGTATTGCATTGGGCA
AAGGCGTTGCAGGACACCCAGGACAAGCTTTTCTGGGACGAGCGAAACGG
AGCGTATTTCTTCTCGCAACAGGATGCACCCAATGTTATTGTGCGACTCA
AGGAAGACCACGATGGAGCCGAACCTTGTGGAAACAGTGTATCCGCCCAC
AATCTTGTCCTACTGGCCCACTATTATGACGAAAATGCCTATCTCCAGAA
GGCCGGGAAACTACTGAATTTCTTTGCAGACGTATCGCCCTTCGGACACG
CTCTGCCAGAGATGTTGTCCGCCCTGCTGATGCACGAGAACGGGCTGGAT
CTTGTGGCAGTGGTGGGACCGGATTCGCCAGACACCCAACGATTTGTGGA
AATTTGTCGCAAGTTCTTTATTCCAAGCATGATCATAGTGCATGTGGATC
CCTCGAATCCAGAGGAAGCCTCCAATCAGCGCTTGCAGACAAAGTTTAAG
ATGGTGGGCGGTAAAACTACGGTTTACATTTGTCACGAGCGAGCTTGTCG
AATGCCAGTTACCGATCCGCAGCAGCTAGAGGATAACCTAATGGCGTATT
TCTTCTCAAAACGTGATTAGATCCGGAAATTTACTCGAAATGTATTTTAA
GAACTTCTAGATGTTAGTTAATTGTTATTGATTTGCTTCAAAAGCAAACA
AAAAGGAGTTCTCGGAACTACATAGTGTTAAGATCCCGTTATTAAAGACC
CCAATAGACTTGCGACTCCAGCTTATTTCACTGTTAAGTCTGAGAGACTG
CATTGCTCCCTAAGTGTCTAGAGTTGGTTAAAGTTGTTGTACAAAGGCCC
CTCTTCTTATTTTCATGGTATAGCTTATGTAGATTTTGAACTGCAAGGTT
CTCTCCAGTTTAAAACCTATCATACCCATCCATTTGAACGAGAAAACGAG
CCTGACAGTGACTAATAACCGAAATAACCTTATACATGTCCATATACAAC
GTTAATAAAGAAAACATACAATGTGTAAAAAAAAAAAAAAAAAAAAAAA

RE10908.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8613-RA 3088 CG8613-RA 93..3069 1..2977 14885 100 Plus
CG8613.a 2880 CG8613.a 196..2880 292..2976 13410 99.9 Plus
CG8613.a 2880 CG8613.a 1..138 158..295 690 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10240316..10241783 433..1900 7265 99.7 Plus
chr2R 21145070 chr2R 10242107..10242972 2104..2961 4070 98.3 Plus
chr2R 21145070 chr2R 10239544..10239838 1..295 1460 99.7 Plus
chr2R 21145070 chr2R 10241841..10242046 1901..2106 1015 99.5 Plus
chr2R 21145070 chr2R 10239896..10240039 292..435 690 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:33:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14353011..14354478 433..1900 7340 100 Plus
2R 25286936 2R 14354802..14355675 2104..2977 4370 100 Plus
2R 25286936 2R 14352239..14352533 1..295 1475 100 Plus
2R 25286936 2R 14354536..14354741 1901..2106 1030 100 Plus
2R 25286936 2R 14352591..14352734 292..435 705 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14354210..14355677 433..1900 7340 100 Plus
2R 25260384 2R 14356001..14356874 2104..2977 4370 100 Plus
2R 25260384 2R 14353438..14353732 1..295 1475 100 Plus
2R 25260384 2R 14355735..14355940 1901..2106 1030 100 Plus
2R 25260384 2R 14353790..14353933 292..435 705 99.3 Plus
Blast to na_te.dros performed on 2019-03-16 20:55:35 has no hits.

RE10908.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:56:38 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10239544..10239838 1..295 99 -> Plus
chr2R 10239900..10240037 296..433 99 -> Plus
chr2R 10240317..10241783 434..1900 99 -> Plus
chr2R 10241841..10242046 1901..2106 99 -> Plus
chr2R 10242110..10242998 2107..2976 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:53:41 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8613-RA 1..2427 144..2570 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:13:20 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8613-RA 1..2427 144..2570 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:15 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8613-RA 1..2427 144..2570 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:57:49 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8613-RA 1..2427 144..2570 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:39 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8613-RA 1..2427 144..2570 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:09:29 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8613-RA 1..2976 1..2976 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:13:20 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8613-RA 1..2976 1..2976 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:15 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8613-RA 9..2984 1..2976 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:57:49 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8613-RA 1..2976 1..2976 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:39 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
CG8613-RA 9..2984 1..2976 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:38 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14352239..14352533 1..295 100 -> Plus
2R 14352595..14352732 296..433 100 -> Plus
2R 14353012..14354478 434..1900 100 -> Plus
2R 14354536..14354741 1901..2106 100 -> Plus
2R 14354805..14355674 2107..2976 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:38 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14352239..14352533 1..295 100 -> Plus
2R 14352595..14352732 296..433 100 -> Plus
2R 14353012..14354478 434..1900 100 -> Plus
2R 14354536..14354741 1901..2106 100 -> Plus
2R 14354805..14355674 2107..2976 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:56:38 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14352239..14352533 1..295 100 -> Plus
2R 14352595..14352732 296..433 100 -> Plus
2R 14353012..14354478 434..1900 100 -> Plus
2R 14354536..14354741 1901..2106 100 -> Plus
2R 14354805..14355674 2107..2976 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:15 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10239744..10240038 1..295 100 -> Plus
arm_2R 10240100..10240237 296..433 100 -> Plus
arm_2R 10240517..10241983 434..1900 100 -> Plus
arm_2R 10242041..10242246 1901..2106 100 -> Plus
arm_2R 10242310..10243179 2107..2976 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:33:18 Download gff for RE10908.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14353438..14353732 1..295 100 -> Plus
2R 14353794..14353931 296..433 100 -> Plus
2R 14354211..14355677 434..1900 100 -> Plus
2R 14355735..14355940 1901..2106 100 -> Plus
2R 14356004..14356873 2107..2976 100   Plus

RE10908.pep Sequence

Translation from 143 to 2569

> RE10908.pep
MFRVRPLLPRIRSSLQTTLKLQADTSQSESESFRRNLRLLHNSCRSRPVS
NQKFRTMATGGEASKEVSKEEPAKQGNRLVASKSPYLLQHAYNPVDWYPW
GEEAFEKARSENKIIFLSVGYSTCHWCHVMEHESFENPETAAIMNENFVN
IKVDREERPDIDKIYMQFLLMSKGSGGWPMSVWLTPTLAPLVAGTYFPPK
SRYGMPSFNTVLKSIARKWETDKESLLATGSSLLSALQKNQDASAVPEAA
FGAGSAIEKLSEAINVHRQRFDQTHGGFGSEPKFPEVPRLNFLFHGYLVT
KDPDVLDMVIETLTQIGKGGIHDHIFGGFARYATTQDWHNVHFEKMLYDQ
GQLMMAFANAYKVTRDEIYLRYADKIHKYLIKDLRHPLGGFYAGEDADSL
PTHEDKVKVEGAFYAWTWDEIQAAFKDQAQRFDDITPERAFEIYAYHYGL
KPPGNVPAYSDPHGHLTGKNILIVRGSEEDTCANFKLEEDRFKKLLATTN
DILHVIRDKRPRPHLDTKIICAWNGLVLSGLCKLGNCYSANREQYMQTAK
ELLDFLRKEMYDPEQKLLIRSCYGVAVGDETLEKNASQIDGFLDDYAFLI
KGLLDYYKATLDVDVLHWAKALQDTQDKLFWDERNGAYFFSQQDAPNVIV
RLKEDHDGAEPCGNSVSAHNLVLLAHYYDENAYLQKAGKLLNFFADVSPF
GHALPEMLSALLMHENGLDLVAVVGPDSPDTQRFVEICRKFFIPSMIIVH
VDPSNPEEASNQRLQTKFKMVGGKTTVYICHERACRMPVTDPQQLEDNLM
AYFFSKRD*

RE10908.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13496-PA 797 GF13496-PA 1..796 1..807 3511 78.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20445-PA 805 GG20445-PA 1..805 1..808 3844 86.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19740-PA 747 GH19740-PA 1..746 57..807 3200 76 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8613-PA 808 CG8613-PA 1..808 1..808 4302 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20164-PA 747 GI20164-PA 1..746 57..807 3140 74.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10685-PA 803 GL10685-PA 1..802 1..807 3368 74.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21208-PA 803 GA21208-PA 1..802 1..807 3365 74.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21533-PA 808 GM21533-PA 1..808 1..808 4270 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11041-PA 808 GD11041-PA 1..808 1..808 4294 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22002-PA 747 GJ22002-PA 1..746 57..807 3207 76 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21469-PA 752 GK21469-PA 1..751 57..807 3238 77.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13577-PA 809 GE13577-PA 1..809 1..808 4146 94.1 Plus

RE10908.hyp Sequence

Translation from 143 to 2569

> RE10908.hyp
MFRVRPLLPRIRSSLQTTLKLQADTSQSESESFRRNLRLLHNSCRSRPVS
NQKFRTMATGGEASKEVSKEEPAKQGNRLVASKSPYLLQHAYNPVDWYPW
GEEAFEKARSENKIIFLSVGYSTCHWCHVMEHESFENPETAAIMNENFVN
IKVDREERPDIDKIYMQFLLMSKGSGGWPMSVWLTPTLAPLVAGTYFPPK
SRYGMPSFNTVLKSIARKWETDKESLLATGSSLLSALQKNQDASAVPEAA
FGAGSAIEKLSEAINVHRQRFDQTHGGFGSEPKFPEVPRLNFLFHGYLVT
KDPDVLDMVIETLTQIGKGGIHDHIFGGFARYATTQDWHNVHFEKMLYDQ
GQLMMAFANAYKVTRDEIYLRYADKIHKYLIKDLRHPLGGFYAGEDADSL
PTHEDKVKVEGAFYAWTWDEIQAAFKDQAQRFDDITPERAFEIYAYHYGL
KPPGNVPAYSDPHGHLTGKNILIVRGSEEDTCANFKLEEDRFKKLLATTN
DILHVIRDKRPRPHLDTKIICAWNGLVLSGLCKLGNCYSANREQYMQTAK
ELLDFLRKEMYDPEQKLLIRSCYGVAVGDETLEKNASQIDGFLDDYAFLI
KGLLDYYKATLDVDVLHWAKALQDTQDKLFWDERNGAYFFSQQDAPNVIV
RLKEDHDGAEPCGNSVSAHNLVLLAHYYDENAYLQKAGKLLNFFADVSPF
GHALPEMLSALLMHENGLDLVAVVGPDSPDTQRFVEICRKFFIPSMIIVH
VDPSNPEEASNQRLQTKFKMVGGKTTVYICHERACRMPVTDPQQLEDNLM
AYFFSKRD*

RE10908.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8613-PA 808 CG8613-PA 1..808 1..808 4302 100 Plus