BDGP Sequence Production Resources |
Search the DGRC for RE10908
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 109 |
Well: | 8 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG8613-RA |
Protein status: | RE10908.pep: gold |
Preliminary Size: | 2555 |
Sequenced Size: | 2999 |
Gene | Date | Evidence |
---|---|---|
CG8613 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8613 | 2005-01-26 | Blastp of sequenced clone |
CG8613 | 2008-04-29 | Release 5.5 accounting |
CG8613 | 2008-08-15 | Release 5.9 accounting |
CG8613 | 2008-12-18 | 5.12 accounting |
2999 bp (2999 high quality bases) assembled on 2005-01-26
GenBank Submission: BT021315
> RE10908.complete GGTGCCAGCCCTATGCCGATAAGCTAAACAATATTAAAAACATTGGTCAA TTCGCGTCGATTGCACACGTTGCACTTTTGTTGGCATTGGACGAGGTCGA GTGAAAGCACAGCGCAAGCCCCGAGAATCCCGATTCGTTTGCTATGTTCA GGGTCAGGCCGCTCCTCCCCAGGATACGAAGCTCCCTGCAAACGACCTTG AAACTCCAAGCAGATACATCGCAATCCGAATCCGAATCGTTCCGTCGGAA CCTACGACTCCTACACAACAGTTGTCGTAGTCGCCCTGTGAGCAACCAGA AATTCCGCACAATGGCCACCGGAGGAGAAGCATCCAAGGAAGTGTCCAAA GAGGAACCCGCCAAGCAGGGCAATCGCTTGGTTGCCTCGAAGTCGCCATA TCTCTTGCAGCATGCCTACAATCCAGTGGACTGGTACCCGTGGGGCGAGG AGGCTTTCGAGAAGGCCCGCAGCGAGAACAAAATCATCTTCTTGTCAGTG GGCTACTCCACCTGTCACTGGTGCCATGTAATGGAGCACGAATCGTTTGA GAACCCGGAAACGGCTGCGATTATGAACGAAAACTTTGTAAACATCAAGG TGGATCGGGAAGAGCGACCGGACATCGATAAGATATACATGCAGTTCCTA CTGATGTCCAAGGGCAGTGGTGGTTGGCCGATGAGTGTGTGGTTAACACC CACTTTGGCTCCACTAGTGGCGGGAACTTACTTCCCACCCAAATCCCGCT ATGGAATGCCCTCATTTAACACTGTTCTTAAATCCATTGCTAGGAAGTGG GAAACCGACAAGGAGTCCCTTCTTGCAACCGGATCTTCATTGCTCTCTGC TTTACAGAAGAACCAGGACGCTTCGGCTGTGCCAGAAGCGGCATTTGGAG CGGGAAGTGCTATTGAAAAGCTGAGCGAAGCCATCAACGTTCATAGGCAG CGATTCGATCAGACCCATGGAGGATTTGGCTCAGAGCCCAAGTTTCCGGA GGTGCCACGTCTCAACTTTCTTTTCCACGGCTATCTCGTCACCAAGGATC CGGATGTTCTGGACATGGTGATTGAAACACTGACTCAAATTGGAAAGGGT GGTATACATGACCACATTTTTGGCGGCTTTGCTCGCTACGCCACCACTCA GGATTGGCACAACGTCCACTTTGAGAAGATGCTCTATGATCAGGGTCAAC TAATGATGGCCTTTGCCAATGCCTACAAGGTGACCAGGGACGAAATATAT TTGCGCTATGCAGATAAAATCCACAAGTACTTGATTAAGGACCTACGTCA TCCTTTAGGGGGATTCTATGCTGGTGAGGACGCGGACTCCCTGCCTACCC ACGAAGATAAAGTAAAGGTAGAGGGAGCATTCTACGCTTGGACCTGGGAC GAAATTCAAGCTGCATTCAAGGATCAGGCGCAGCGTTTTGACGACATTAC GCCCGAGCGGGCTTTTGAAATATATGCTTACCACTACGGTCTTAAGCCAC CGGGTAATGTTCCAGCCTACAGCGATCCCCATGGTCATCTCACTGGCAAG AACATTCTAATCGTACGAGGATCAGAGGAGGACACCTGCGCTAACTTTAA GTTGGAGGAGGATCGATTTAAGAAGCTGCTGGCCACAACCAATGATATAT TGCACGTTATCCGGGATAAGCGACCGCGTCCGCATCTGGACACAAAGATT ATATGCGCATGGAACGGTCTGGTGTTGTCGGGACTCTGCAAGCTAGGCAA TTGCTATTCCGCCAACAGGGAGCAGTATATGCAGACAGCAAAGGAACTTC TTGATTTCCTTCGCAAGGAAATGTATGATCCGGAACAGAAGCTGCTCATC CGTTCGTGCTATGGTGTGGCCGTGGGTGATGAAACCCTGGAGAAGAATGC ATCGCAAATCGATGGGTTCCTTGATGACTATGCGTTCCTCATCAAGGGCT TGCTGGACTACTACAAAGCTACACTCGACGTAGATGTATTGCATTGGGCA AAGGCGTTGCAGGACACCCAGGACAAGCTTTTCTGGGACGAGCGAAACGG AGCGTATTTCTTCTCGCAACAGGATGCACCCAATGTTATTGTGCGACTCA AGGAAGACCACGATGGAGCCGAACCTTGTGGAAACAGTGTATCCGCCCAC AATCTTGTCCTACTGGCCCACTATTATGACGAAAATGCCTATCTCCAGAA GGCCGGGAAACTACTGAATTTCTTTGCAGACGTATCGCCCTTCGGACACG CTCTGCCAGAGATGTTGTCCGCCCTGCTGATGCACGAGAACGGGCTGGAT CTTGTGGCAGTGGTGGGACCGGATTCGCCAGACACCCAACGATTTGTGGA AATTTGTCGCAAGTTCTTTATTCCAAGCATGATCATAGTGCATGTGGATC CCTCGAATCCAGAGGAAGCCTCCAATCAGCGCTTGCAGACAAAGTTTAAG ATGGTGGGCGGTAAAACTACGGTTTACATTTGTCACGAGCGAGCTTGTCG AATGCCAGTTACCGATCCGCAGCAGCTAGAGGATAACCTAATGGCGTATT TCTTCTCAAAACGTGATTAGATCCGGAAATTTACTCGAAATGTATTTTAA GAACTTCTAGATGTTAGTTAATTGTTATTGATTTGCTTCAAAAGCAAACA AAAAGGAGTTCTCGGAACTACATAGTGTTAAGATCCCGTTATTAAAGACC CCAATAGACTTGCGACTCCAGCTTATTTCACTGTTAAGTCTGAGAGACTG CATTGCTCCCTAAGTGTCTAGAGTTGGTTAAAGTTGTTGTACAAAGGCCC CTCTTCTTATTTTCATGGTATAGCTTATGTAGATTTTGAACTGCAAGGTT CTCTCCAGTTTAAAACCTATCATACCCATCCATTTGAACGAGAAAACGAG CCTGACAGTGACTAATAACCGAAATAACCTTATACATGTCCATATACAAC GTTAATAAAGAAAACATACAATGTGTAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 10240316..10241783 | 433..1900 | 7265 | 99.7 | Plus |
chr2R | 21145070 | chr2R | 10242107..10242972 | 2104..2961 | 4070 | 98.3 | Plus |
chr2R | 21145070 | chr2R | 10239544..10239838 | 1..295 | 1460 | 99.7 | Plus |
chr2R | 21145070 | chr2R | 10241841..10242046 | 1901..2106 | 1015 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 10239896..10240039 | 292..435 | 690 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 14353011..14354478 | 433..1900 | 7340 | 100 | Plus |
2R | 25286936 | 2R | 14354802..14355675 | 2104..2977 | 4370 | 100 | Plus |
2R | 25286936 | 2R | 14352239..14352533 | 1..295 | 1475 | 100 | Plus |
2R | 25286936 | 2R | 14354536..14354741 | 1901..2106 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 14352591..14352734 | 292..435 | 705 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 14354210..14355677 | 433..1900 | 7340 | 100 | Plus |
2R | 25260384 | 2R | 14356001..14356874 | 2104..2977 | 4370 | 100 | Plus |
2R | 25260384 | 2R | 14353438..14353732 | 1..295 | 1475 | 100 | Plus |
2R | 25260384 | 2R | 14355735..14355940 | 1901..2106 | 1030 | 100 | Plus |
2R | 25260384 | 2R | 14353790..14353933 | 292..435 | 705 | 99.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10239544..10239838 | 1..295 | 99 | -> | Plus |
chr2R | 10239900..10240037 | 296..433 | 99 | -> | Plus |
chr2R | 10240317..10241783 | 434..1900 | 99 | -> | Plus |
chr2R | 10241841..10242046 | 1901..2106 | 99 | -> | Plus |
chr2R | 10242110..10242998 | 2107..2976 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8613-RA | 1..2427 | 144..2570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8613-RA | 1..2427 | 144..2570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8613-RA | 1..2427 | 144..2570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8613-RA | 1..2427 | 144..2570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8613-RA | 1..2427 | 144..2570 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8613-RA | 1..2976 | 1..2976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8613-RA | 1..2976 | 1..2976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8613-RA | 9..2984 | 1..2976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8613-RA | 1..2976 | 1..2976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8613-RA | 9..2984 | 1..2976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14352239..14352533 | 1..295 | 100 | -> | Plus |
2R | 14352595..14352732 | 296..433 | 100 | -> | Plus |
2R | 14353012..14354478 | 434..1900 | 100 | -> | Plus |
2R | 14354536..14354741 | 1901..2106 | 100 | -> | Plus |
2R | 14354805..14355674 | 2107..2976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14352239..14352533 | 1..295 | 100 | -> | Plus |
2R | 14352595..14352732 | 296..433 | 100 | -> | Plus |
2R | 14353012..14354478 | 434..1900 | 100 | -> | Plus |
2R | 14354536..14354741 | 1901..2106 | 100 | -> | Plus |
2R | 14354805..14355674 | 2107..2976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14352239..14352533 | 1..295 | 100 | -> | Plus |
2R | 14352595..14352732 | 296..433 | 100 | -> | Plus |
2R | 14353012..14354478 | 434..1900 | 100 | -> | Plus |
2R | 14354536..14354741 | 1901..2106 | 100 | -> | Plus |
2R | 14354805..14355674 | 2107..2976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10239744..10240038 | 1..295 | 100 | -> | Plus |
arm_2R | 10240100..10240237 | 296..433 | 100 | -> | Plus |
arm_2R | 10240517..10241983 | 434..1900 | 100 | -> | Plus |
arm_2R | 10242041..10242246 | 1901..2106 | 100 | -> | Plus |
arm_2R | 10242310..10243179 | 2107..2976 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14353438..14353732 | 1..295 | 100 | -> | Plus |
2R | 14353794..14353931 | 296..433 | 100 | -> | Plus |
2R | 14354211..14355677 | 434..1900 | 100 | -> | Plus |
2R | 14355735..14355940 | 1901..2106 | 100 | -> | Plus |
2R | 14356004..14356873 | 2107..2976 | 100 | Plus |
Translation from 143 to 2569
> RE10908.pep MFRVRPLLPRIRSSLQTTLKLQADTSQSESESFRRNLRLLHNSCRSRPVS NQKFRTMATGGEASKEVSKEEPAKQGNRLVASKSPYLLQHAYNPVDWYPW GEEAFEKARSENKIIFLSVGYSTCHWCHVMEHESFENPETAAIMNENFVN IKVDREERPDIDKIYMQFLLMSKGSGGWPMSVWLTPTLAPLVAGTYFPPK SRYGMPSFNTVLKSIARKWETDKESLLATGSSLLSALQKNQDASAVPEAA FGAGSAIEKLSEAINVHRQRFDQTHGGFGSEPKFPEVPRLNFLFHGYLVT KDPDVLDMVIETLTQIGKGGIHDHIFGGFARYATTQDWHNVHFEKMLYDQ GQLMMAFANAYKVTRDEIYLRYADKIHKYLIKDLRHPLGGFYAGEDADSL PTHEDKVKVEGAFYAWTWDEIQAAFKDQAQRFDDITPERAFEIYAYHYGL KPPGNVPAYSDPHGHLTGKNILIVRGSEEDTCANFKLEEDRFKKLLATTN DILHVIRDKRPRPHLDTKIICAWNGLVLSGLCKLGNCYSANREQYMQTAK ELLDFLRKEMYDPEQKLLIRSCYGVAVGDETLEKNASQIDGFLDDYAFLI KGLLDYYKATLDVDVLHWAKALQDTQDKLFWDERNGAYFFSQQDAPNVIV RLKEDHDGAEPCGNSVSAHNLVLLAHYYDENAYLQKAGKLLNFFADVSPF GHALPEMLSALLMHENGLDLVAVVGPDSPDTQRFVEICRKFFIPSMIIVH VDPSNPEEASNQRLQTKFKMVGGKTTVYICHERACRMPVTDPQQLEDNLM AYFFSKRD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13496-PA | 797 | GF13496-PA | 1..796 | 1..807 | 3511 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20445-PA | 805 | GG20445-PA | 1..805 | 1..808 | 3844 | 86.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19740-PA | 747 | GH19740-PA | 1..746 | 57..807 | 3200 | 76 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8613-PA | 808 | CG8613-PA | 1..808 | 1..808 | 4302 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20164-PA | 747 | GI20164-PA | 1..746 | 57..807 | 3140 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10685-PA | 803 | GL10685-PA | 1..802 | 1..807 | 3368 | 74.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21208-PA | 803 | GA21208-PA | 1..802 | 1..807 | 3365 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21533-PA | 808 | GM21533-PA | 1..808 | 1..808 | 4270 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11041-PA | 808 | GD11041-PA | 1..808 | 1..808 | 4294 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22002-PA | 747 | GJ22002-PA | 1..746 | 57..807 | 3207 | 76 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21469-PA | 752 | GK21469-PA | 1..751 | 57..807 | 3238 | 77.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13577-PA | 809 | GE13577-PA | 1..809 | 1..808 | 4146 | 94.1 | Plus |
Translation from 143 to 2569
> RE10908.hyp MFRVRPLLPRIRSSLQTTLKLQADTSQSESESFRRNLRLLHNSCRSRPVS NQKFRTMATGGEASKEVSKEEPAKQGNRLVASKSPYLLQHAYNPVDWYPW GEEAFEKARSENKIIFLSVGYSTCHWCHVMEHESFENPETAAIMNENFVN IKVDREERPDIDKIYMQFLLMSKGSGGWPMSVWLTPTLAPLVAGTYFPPK SRYGMPSFNTVLKSIARKWETDKESLLATGSSLLSALQKNQDASAVPEAA FGAGSAIEKLSEAINVHRQRFDQTHGGFGSEPKFPEVPRLNFLFHGYLVT KDPDVLDMVIETLTQIGKGGIHDHIFGGFARYATTQDWHNVHFEKMLYDQ GQLMMAFANAYKVTRDEIYLRYADKIHKYLIKDLRHPLGGFYAGEDADSL PTHEDKVKVEGAFYAWTWDEIQAAFKDQAQRFDDITPERAFEIYAYHYGL KPPGNVPAYSDPHGHLTGKNILIVRGSEEDTCANFKLEEDRFKKLLATTN DILHVIRDKRPRPHLDTKIICAWNGLVLSGLCKLGNCYSANREQYMQTAK ELLDFLRKEMYDPEQKLLIRSCYGVAVGDETLEKNASQIDGFLDDYAFLI KGLLDYYKATLDVDVLHWAKALQDTQDKLFWDERNGAYFFSQQDAPNVIV RLKEDHDGAEPCGNSVSAHNLVLLAHYYDENAYLQKAGKLLNFFADVSPF GHALPEMLSALLMHENGLDLVAVVGPDSPDTQRFVEICRKFFIPSMIIVH VDPSNPEEASNQRLQTKFKMVGGKTTVYICHERACRMPVTDPQQLEDNLM AYFFSKRD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8613-PA | 808 | CG8613-PA | 1..808 | 1..808 | 4302 | 100 | Plus |