Clone RE11317 Report

Search the DGRC for RE11317

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:113
Well:17
Vector:pFlc-1
Associated Gene/TranscriptCG32982-RB
Protein status:RE11317.pep: gold
Preliminary Size:276
Sequenced Size:2440

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32982 2001-12-12 Blastp of sequenced clone
CG18566 2002-01-01 Sim4 clustering to Release 2
CG32982 2003-01-01 Sim4 clustering to Release 3
CG32982 2008-04-29 Release 5.5 accounting
CG32982 2008-08-15 Release 5.9 accounting
CG32982 2008-12-18 5.12 accounting

Clone Sequence Records

RE11317.complete Sequence

2440 bp (2440 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070571

> RE11317.complete
AATAGTCGTCAATGGAAGTTGGTACGTTTCGGTTCGAGCTGATCTTAGCC
AAAGTGTTGCGTGCAGTGTTGAGTGTCAGTGAAACTCCATCGAAATTCCA
ATAAAAACTAACCAATAACGAGTTATATAACAACTGTTGAAAAGATTTCT
TTATGAAATTTTCAATCAACAGAAAACGAAATTTATTTAAAGTTCAATTT
ACCTCAGTGCTAAATGATTTTTTCCACGGATTTGCATTGGCAATCCTTGC
TGGCAGGACGCATTCCGGTGGCCTCCATGACAGGACCCATTAAACGCGGA
CTGCTCTGGCAGCAAAGGGATCGGCTCTTCTCTCGCTGGAAGGAGCGATA
CTTTGTGCTCACTCGTGACTACTTGCACTGCTTCAAAAGAGCCTCGGGAT
CGGCCAATGAACGTGCCTCGGATATGGGACAGTTTATCTTCAAGGTCAAG
CTGGTGGACGTGGAGAAGGTGGAGTGGCTGAATCGGCGCTCCTACAGCGC
CATTGGTCTGCTACTGGGTCGCGAGGGTCGTGTTCTACTCCGCTGCGATG
ATGGCCTCGAGGATTGGTTCGAGCTGCTGGAGGAATGCACAATGACCTCC
AAGGAGCGCAGACGAGCCCTGAAGATTGCCCAAGGACCCAGATCCCGAGC
CTCATTGGCTGCTCCCGTTTCGCATGCTTCGCTGCAGTTCCAGCATTTTG
GACTCGGAGGCACTTACTCGAGTGCCCTGGACGATTGGCTGATGACGAAT
GGAACCGGTGGTCTGGCCCGGCACAAGATTGGAGCTGGCAGTCTGAACGG
TTATGGCGGGGCCAATCCCTTCCTGTTCTCCGATTCGGTGCCGGATCTGA
GTGCCCTGAACAACGAAAACCACAATCATCACCTGAGCGGCATCAGCACG
AACCACTCGACGCCGCAAAAGATACCGCACCACAGCAATGCGAATCTCAG
TCGATACTCCAATGGATATGTCTCGGCCCAGAACAGTTTCACCCAAGCCG
GAGCACTCTACGGATCGCCTAGGCGGATCTTTATCAACAGCAGCTTCGGT
TCCAATCAGGTGGTGGATGAGGAGACCGAGGAGACGGAGGTTCAGCTGAG
GAGACCCAGACTGTTCCGGGGAGTTAGCGCTACTCCGGATAATGGCAACG
AACTGGACCGCGATTGGCTGTACCGGAAGCCAAGGGCGCCCACTGATATG
AGGCACTCAGTTCAACCAATGTTACCCACTGGCGGCGGCAGCAACATCGG
GCTGGCCAAAACCGAACTGGACTGTTCGGCCCATGATAGTGGCCTGGACA
CGCCCCCATCGACGCACCGCCCCTCGAGCTACCGGGAGGCGAGCAGGGAC
AGCACAGAGACCAATGGCAGTTCGTCGAGGGGAACACTGCTGAATAACTC
ATCGCCAGGCGGCAGTTTTCGAGCCAAAAAGCTGAGCACCCAAGTAAGCA
ATCTCAATCAGTTGAATTCCCTGAACGGATCGAGATACTCGGTGCAGGAT
CAACGCATCTTGAAGATGCGCAACAACGAGGAGGATCGCTGTGCCTCCAT
CAAGATGGCCAATCGTCTCAATCAGAATCAGGAGCAGGCCACTTACGATC
CCAACCAGAATCGCTACTATAAGAACGGTAATGCCACGCCCCCCACATCA
CTGACGCCACAGCATACGCCGCAGCACAAACTGACGATGATGCACTATGG
CAATGGGAATGGGAACATGGGCACCCTGAATGGCAACACCAACGGATCGG
ATCGCATAAACGGATCGGCCATTTTCCGGGAGCGCTACCAACATCCCGCC
CTGGCCGCCATCATCAACGAAGCCCAGGGCCTTAAGTTTCGAGAAGAATC
AGAAAATATGTGGTAAACATACCCAAAGCCCCAAATTGTGCATGTTACAC
AAAGTGTCCAGCCGACTGGCCCCATAGTGCATGAGAAGATCGTGATGTTG
AATGGACCAAAAGATATAGATAAAGCGATCCTTTCCCCAACTTGTAGAGC
GGGCCTATTCGGACAGTCAGCAGCGTCGCCTCAACAACAACAATGGACCG
ACTCCCCAACCAGCCTCGCCACTCGCCCAGCGCCGGAATAATGGTGGACT
CGGATCCGGAGTCGGATCGGGGGCTATATATGGCACGCCCACGCGTGTAT
AGCGCCTAAAGGTCTAAAGATAATCCAAATCGATGGAGAATTGATTGCTC
CCCCACTAGTTTAATAATGATATAAATTAGTCGGTAAAGTAGTCGACTTG
ATACAAAGTTTTGGAAATTATTTGCATAGAAAATACTTCAACGAAGGTAG
AGAATAGTAACTAAATCTTAACTATGTAGTAGTACTCGTAGTGTGTGTGC
TCCAATGTCCAGCTTTATGTAAATGTTTAAATAAAATATACATTAGTAAA
AAGCATCTTAATAAAAGATAAAATAAAAAAAAAAAAAAAA

RE11317.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32982-RB 2483 CG32982-RB 63..2483 4..2424 12075 99.9 Plus
CG32982.g 3474 CG32982.g 1096..3284 240..2428 10930 99.9 Plus
CG32982-RE 3334 CG32982-RE 1142..3329 241..2428 10925 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9160992..9161626 1209..1843 3085 99.1 Plus
chr2L 23010047 chr2L 9160300..9160929 581..1210 3015 98.6 Plus
chr2L 23010047 chr2L 9162054..9162636 1842..2424 2780 98.5 Plus
chr2L 23010047 chr2L 9150117..9150356 1..240 1185 99.6 Plus
chr2L 23010047 chr2L 9160046..9160186 443..583 705 100 Plus
chr2L 23010047 chr2L 9153583..9153690 240..347 540 100 Plus
chr2L 23010047 chr2L 9155403..9155502 347..446 500 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:33:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9162074..9162708 1209..1843 3175 100 Plus
2L 23513712 2L 9161383..9162012 581..1210 3150 100 Plus
2L 23513712 2L 9163139..9163725 1842..2428 2920 99.8 Plus
2L 23513712 2L 9151204..9151440 4..240 1170 99.6 Plus
2L 23513712 2L 9161129..9161269 443..583 705 100 Plus
2L 23513712 2L 9154658..9154765 240..347 540 100 Plus
2L 23513712 2L 9156497..9156596 347..446 500 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9162074..9162708 1209..1843 3175 100 Plus
2L 23513712 2L 9161383..9162012 581..1210 3150 100 Plus
2L 23513712 2L 9163139..9163725 1842..2428 2920 99.8 Plus
2L 23513712 2L 9151204..9151440 4..240 1170 99.5 Plus
2L 23513712 2L 9161129..9161269 443..583 705 100 Plus
2L 23513712 2L 9154658..9154765 240..347 540 100 Plus
2L 23513712 2L 9156497..9156596 347..446 500 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:29:53 has no hits.

RE11317.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:30:53 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9160048..9160185 445..582 100 -> Plus
chr2L 9150117..9150356 1..240 99 -> Plus
chr2L 9153584..9153690 241..347 100 -> Plus
chr2L 9155404..9155500 348..444 100 -> Plus
chr2L 9160302..9160929 583..1210 98 -> Plus
chr2L 9160994..9161626 1211..1843 99 -> Plus
chr2L 9162056..9162636 1844..2424 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:03:56 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
CG32982-RB 1..1653 214..1866 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:17:23 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
CG32982-RB 1..1653 214..1866 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:52:29 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
CG32982-RB 1..1653 214..1866 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:43:28 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
CG32982-RB 1..1653 214..1866 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:16 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
CG32982-RB 1..1653 214..1866 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:03:55 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
CG32982-RB 1..2424 1..2424 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:17:23 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
CG32982-RB 1..2424 1..2424 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:52:29 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
CG32982-RB 3..2426 1..2424 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:43:28 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
CG32982-RB 1..2424 1..2424 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:16 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
CG32982-RB 3..2426 1..2424 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:30:53 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9161131..9161268 445..582 100 -> Plus
2L 9151201..9151440 1..240 99 -> Plus
2L 9154659..9154765 241..347 100 -> Plus
2L 9156498..9156594 348..444 100 -> Plus
2L 9161385..9162012 583..1210 100 -> Plus
2L 9162076..9162708 1211..1843 100 -> Plus
2L 9163141..9163721 1844..2424 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:30:53 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9161131..9161268 445..582 100 -> Plus
2L 9151201..9151440 1..240 99 -> Plus
2L 9154659..9154765 241..347 100 -> Plus
2L 9156498..9156594 348..444 100 -> Plus
2L 9161385..9162012 583..1210 100 -> Plus
2L 9162076..9162708 1211..1843 100 -> Plus
2L 9163141..9163721 1844..2424 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:30:53 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9161131..9161268 445..582 100 -> Plus
2L 9151201..9151440 1..240 99 -> Plus
2L 9154659..9154765 241..347 100 -> Plus
2L 9156498..9156594 348..444 100 -> Plus
2L 9161385..9162012 583..1210 100 -> Plus
2L 9162076..9162708 1211..1843 100 -> Plus
2L 9163141..9163721 1844..2424 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:52:29 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9151201..9151440 1..240 99 -> Plus
arm_2L 9154659..9154765 241..347 100 -> Plus
arm_2L 9156498..9156594 348..444 100 -> Plus
arm_2L 9161131..9161268 445..582 100 -> Plus
arm_2L 9161385..9162012 583..1210 100 -> Plus
arm_2L 9162076..9162708 1211..1843 100 -> Plus
arm_2L 9163141..9163721 1844..2424 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:19:37 Download gff for RE11317.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9151201..9151440 1..240 99 -> Plus
2L 9154659..9154765 241..347 100 -> Plus
2L 9156498..9156594 348..444 100 -> Plus
2L 9161131..9161268 445..582 100 -> Plus
2L 9161385..9162012 583..1210 100 -> Plus
2L 9162076..9162708 1211..1843 100 -> Plus
2L 9163141..9163721 1844..2424 99   Plus

RE11317.pep Sequence

Translation from 213 to 1865

> RE11317.pep
MIFSTDLHWQSLLAGRIPVASMTGPIKRGLLWQQRDRLFSRWKERYFVLT
RDYLHCFKRASGSANERASDMGQFIFKVKLVDVEKVEWLNRRSYSAIGLL
LGREGRVLLRCDDGLEDWFELLEECTMTSKERRRALKIAQGPRSRASLAA
PVSHASLQFQHFGLGGTYSSALDDWLMTNGTGGLARHKIGAGSLNGYGGA
NPFLFSDSVPDLSALNNENHNHHLSGISTNHSTPQKIPHHSNANLSRYSN
GYVSAQNSFTQAGALYGSPRRIFINSSFGSNQVVDEETEETEVQLRRPRL
FRGVSATPDNGNELDRDWLYRKPRAPTDMRHSVQPMLPTGGGSNIGLAKT
ELDCSAHDSGLDTPPSTHRPSSYREASRDSTETNGSSSRGTLLNNSSPGG
SFRAKKLSTQVSNLNQLNSLNGSRYSVQDQRILKMRNNEEDRCASIKMAN
RLNQNQEQATYDPNQNRYYKNGNATPPTSLTPQHTPQHKLTMMHYGNGNG
NMGTLNGNTNGSDRINGSAIFRERYQHPALAAIINEAQGLKFREESENMW
*

RE11317.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22709-PA 714 GF22709-PA 143..666 10..546 2506 90.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25333-PA 673 GG25333-PA 146..673 10..550 2707 93.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13265-PA 809 GH13265-PA 236..769 1..546 2385 85.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32982-PB 550 CG32982-PB 1..550 1..550 2906 100 Plus
CG32982-PE 793 CG32982-PE 253..793 10..550 2853 100 Plus
CG32982-PD 778 CG32982-PD 238..778 10..550 2853 100 Plus
CG32982-PF 730 CG32982-PF 164..682 10..546 2701 96.3 Plus
CG32982-PG 720 CG32982-PG 149..667 10..546 2701 96.3 Plus
CG32982-PA 715 CG32982-PA 149..667 10..546 2701 96.3 Plus
CG32982-PH 687 CG32982-PH 149..639 10..546 2522 91.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17463-PA 718 GI17463-PA 142..678 10..546 2378 86 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26246-PA 336 GL26246-PA 1..142 1..145 741 95.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17223-PA 822 GA17223-PA 238..774 1..546 2514 86.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17410-PA 532 GM17410-PA 1..532 1..550 2804 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12028-PA 260 GD12028-PA 1..255 78..332 1365 100 Plus
Dsim\GD23589-PA 129 GD23589-PA 1..79 1..79 429 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14434-PA 703 GJ14434-PA 139..663 10..546 2358 86.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15068-PA 724 GK15068-PA 156..682 10..546 2318 84.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18827-PA 672 GE18827-PA 149..672 10..550 2753 94.8 Plus

RE11317.hyp Sequence

Translation from 213 to 1865

> RE11317.hyp
MIFSTDLHWQSLLAGRIPVASMTGPIKRGLLWQQRDRLFSRWKERYFVLT
RDYLHCFKRASGSANERASDMGQFIFKVKLVDVEKVEWLNRRSYSAIGLL
LGREGRVLLRCDDGLEDWFELLEECTMTSKERRRALKIAQGPRSRASLAA
PVSHASLQFQHFGLGGTYSSALDDWLMTNGTGGLARHKIGAGSLNGYGGA
NPFLFSDSVPDLSALNNENHNHHLSGISTNHSTPQKIPHHSNANLSRYSN
GYVSAQNSFTQAGALYGSPRRIFINSSFGSNQVVDEETEETEVQLRRPRL
FRGVSATPDNGNELDRDWLYRKPRAPTDMRHSVQPMLPTGGGSNIGLAKT
ELDCSAHDSGLDTPPSTHRPSSYREASRDSTETNGSSSRGTLLNNSSPGG
SFRAKKLSTQVSNLNQLNSLNGSRYSVQDQRILKMRNNEEDRCASIKMAN
RLNQNQEQATYDPNQNRYYKNGNATPPTSLTPQHTPQHKLTMMHYGNGNG
NMGTLNGNTNGSDRINGSAIFRERYQHPALAAIINEAQGLKFREESENMW
*

RE11317.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32982-PB 550 CG32982-PB 1..550 1..550 2906 100 Plus
CG32982-PE 793 CG32982-PE 253..793 10..550 2853 100 Plus
CG32982-PD 778 CG32982-PD 238..778 10..550 2853 100 Plus
CG32982-PF 730 CG32982-PF 164..682 10..546 2701 96.3 Plus
CG32982-PG 720 CG32982-PG 149..667 10..546 2701 96.3 Plus