BDGP Sequence Production Resources |
Search the DGRC for RE11339
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 113 |
Well: | 39 |
Vector: | pFlc-1 |
Associated Gene/Transcript | l(3)73Ah-RA |
Protein status: | RE11339.pep: gold |
Preliminary Size: | 669 |
Sequenced Size: | 1334 |
Gene | Date | Evidence |
---|---|---|
CG4195 | 2001-12-14 | Blastp of sequenced clone |
CG4195 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4195 | 2003-01-01 | Sim4 clustering to Release 3 |
l(3)73Ah | 2008-04-29 | Release 5.5 accounting |
l(3)73Ah | 2008-08-15 | Release 5.9 accounting |
l(3)73Ah | 2008-12-18 | 5.12 accounting |
1334 bp (1334 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071030
> RE11339.complete GCTAGCTCACACGTACACACAATTTATTTAGTCGTGATTTCTATTTTATT TGTTTCAAATTACAACCAAGAAGGAAACAAATCGCGACCAAAATCCGCTG GCCACAATGCCGAGTGCCTGTACAAGCGTGCGCGAGCATTCCCACTAATC GGAAGCGAGCGCATCCGCCGTTTTGAGCGTTTTCCGCGCGGGAGTGGGAA ATCGAAAAGGCAAGGCAAGCCATCGGTCCGCTGCAAAATAGGGATAAATA GGATATAGTAACGTAGTTCAGCACACAATCGGGGGGCCAGCATGGAGCGG CGCGTGAAGCTGAAGACGATCAATCCGCACATAACGTGCAAGATCTGCGG CGGCTACTTCATCGATGCCACCACGGTGACGGAGTGTCTGCACACATTTT GCAAGAGTTGCCTGGTGAAGCACCTGGAGGAGAAGAAGACCTGCCCCACC TGCGACAACATCATCCATCAGTCCCATCCCCTGCAATACATCAGCTTCGA TCGCACCATGCAGGACATTGTGTACAAACTGGTGCCGAAACTGCAAGAAG ATGAATCGCGCCGAGAGCGGGACTTCTACAAGAGCAGGAACATGCCGTGT CCCAAGGATATCACGCAGAACCACGAGGACGACAACGAGAAGGTGATGGA CGCCCACGCCGAGTCCGACTTCCATCGCCTGGACGAGCAGGTGAACGTGT GCCTGGAGTGCATTAGCAATAACTTCAAGAACCTGCAGAGGCGATTCATT CGCTGCAGCTCGCAGGCGACGATAACGCATCTCAAGAAGCTGGTGGCCAA GAAGATCCTCAACGGCATCGAAAAGTACAGAGAGATCGACATACTGTGCA ACGAGGAGCTGCTCGGCAAGGATCACACGCTGAAGTTCGTCTACGTGACG CGCTGGCGCTTCCGGGATCCGCCGCTTCGGCTGCAGTTTCGTCCGCGGGT CGAGCTCTAACCACTGTTTTAGTATAATGCCACAACAAATGATCTATTTT TATAATTTATTGACAATGCGTAAATATCGTAATTAGGAGAGTCGCTAGTG TTAGTCCCCTCGAAACCATGAGTGTATGTGTAAATGTGCATGTATAAAGT CGTAAATATATGGTTATCCCTCCTAGAATTAAGTAACTTCCACTTCCTAA CTCGTGTGACCCTTTTTTTGCCGCCTTCTTTGCTGCATTTGCTCATGATT TAATCAACGTTCTCCGTTTGCAATATTTTATGTTCTCCATTTTTAGTTTG AAATATATATGTATTTATTATTTTAATGTACAAAACACACGAATGTAAAT AAATTTGTAATTATGTCGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 16579422..16579907 | 833..1318 | 2430 | 100 | Plus |
chr3L | 24539361 | chr3L | 16578330..16578732 | 1..397 | 1890 | 98.5 | Plus |
chr3L | 24539361 | chr3L | 16579020..16579305 | 549..834 | 1415 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 16578791..16578947 | 394..550 | 770 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 16589647..16590134 | 833..1320 | 2440 | 100 | Plus |
3L | 28110227 | 3L | 16588561..16588957 | 1..397 | 1985 | 100 | Plus |
3L | 28110227 | 3L | 16589245..16589530 | 549..834 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 16589016..16589172 | 394..550 | 770 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 16582747..16583234 | 833..1320 | 2440 | 100 | Plus |
3L | 28103327 | 3L | 16581661..16582057 | 1..397 | 1985 | 100 | Plus |
3L | 28103327 | 3L | 16582345..16582630 | 549..834 | 1430 | 100 | Plus |
3L | 28103327 | 3L | 16582116..16582272 | 394..550 | 770 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
412 | 7567 | 412 412 7567bp | 1168..1221 | 1281..1227 | 119 | 70.9 | Minus |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 459..526 | 1240..1305 | 118 | 67.6 | Plus |
TART-A | 13424 | TART-A 13424bp | 8763..8803 | 689..649 | 115 | 75.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 16578330..16578732 | 1..397 | 98 | -> | Plus |
chr3L | 16578795..16578947 | 398..550 | 100 | -> | Plus |
chr3L | 16579022..16579305 | 551..834 | 99 | -> | Plus |
chr3L | 16579424..16579907 | 835..1318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)73Ah-RA | 1..669 | 292..960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)73Ah-RA | 1..669 | 292..960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)73Ah-RB | 1..669 | 292..960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)73Ah-RA | 1..669 | 292..960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)73Ah-RB | 1..669 | 292..960 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)73Ah-RA | 645..1962 | 1..1318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)73Ah-RA | 645..1962 | 1..1318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)73Ah-RB | 5..1322 | 1..1318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)73Ah-RA | 645..1962 | 1..1318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)73Ah-RB | 5..1322 | 1..1318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16589020..16589172 | 398..550 | 100 | -> | Plus |
3L | 16589247..16589530 | 551..834 | 100 | -> | Plus |
3L | 16588561..16588957 | 1..397 | 100 | -> | Plus |
3L | 16589649..16590132 | 835..1318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16589020..16589172 | 398..550 | 100 | -> | Plus |
3L | 16589247..16589530 | 551..834 | 100 | -> | Plus |
3L | 16588561..16588957 | 1..397 | 100 | -> | Plus |
3L | 16589649..16590132 | 835..1318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16589020..16589172 | 398..550 | 100 | -> | Plus |
3L | 16589247..16589530 | 551..834 | 100 | -> | Plus |
3L | 16588561..16588957 | 1..397 | 100 | -> | Plus |
3L | 16589649..16590132 | 835..1318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 16581661..16582057 | 1..397 | 100 | -> | Plus |
arm_3L | 16582120..16582272 | 398..550 | 100 | -> | Plus |
arm_3L | 16582347..16582630 | 551..834 | 100 | -> | Plus |
arm_3L | 16582749..16583232 | 835..1318 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 16581661..16582057 | 1..397 | 100 | -> | Plus |
3L | 16582120..16582272 | 398..550 | 100 | -> | Plus |
3L | 16582347..16582630 | 551..834 | 100 | -> | Plus |
3L | 16582749..16583232 | 835..1318 | 100 | Plus |
Translation from 291 to 959
> RE11339.pep MERRVKLKTINPHITCKICGGYFIDATTVTECLHTFCKSCLVKHLEEKKT CPTCDNIIHQSHPLQYISFDRTMQDIVYKLVPKLQEDESRRERDFYKSRN MPCPKDITQNHEDDNEKVMDAHAESDFHRLDEQVNVCLECISNNFKNLQR RFIRCSSQATITHLKKLVAKKILNGIEKYREIDILCNEELLGKDHTLKFV YVTRWRFRDPPLRLQFRPRVEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23921-PA | 222 | GF23921-PA | 1..222 | 1..222 | 1172 | 99.1 | Plus |
Dana\GF11991-PA | 1606 | GF11991-PA | 232..449 | 3..217 | 349 | 35.7 | Plus |
Dana\GF12933-PA | 1371 | GF12933-PA | 18..218 | 14..217 | 182 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13566-PA | 222 | GG13566-PA | 1..222 | 1..222 | 1176 | 99.5 | Plus |
Dere\GG22533-PA | 1573 | GG22533-PA | 226..439 | 5..217 | 342 | 35.7 | Plus |
Dere\GG20351-PA | 1387 | GG20351-PA | 36..232 | 14..217 | 186 | 27.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15918-PA | 222 | GH15918-PA | 1..222 | 1..222 | 1172 | 99.1 | Plus |
Dgri\GH21599-PA | 1357 | GH21599-PA | 5..220 | 3..217 | 335 | 35.4 | Plus |
Dgri\GH20310-PA | 1536 | GH20310-PA | 27..239 | 6..217 | 205 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(3)73Ah-PA | 222 | CG4195-PA | 1..222 | 1..222 | 1202 | 100 | Plus |
l(3)73Ah-PB | 222 | CG4195-PB | 1..222 | 1..222 | 1202 | 100 | Plus |
Psc-PC | 1601 | CG3886-PC | 250..465 | 3..217 | 333 | 35 | Plus |
Psc-PB | 1601 | CG3886-PB | 250..465 | 3..217 | 333 | 35 | Plus |
Psc-PA | 1601 | CG3886-PA | 250..465 | 3..217 | 333 | 35 | Plus |
Su(z)2-PB | 1368 | CG3905-PB | 33..228 | 14..217 | 197 | 27.4 | Plus |
Su(z)2-PA | 1368 | CG3905-PA | 33..228 | 14..217 | 197 | 27.4 | Plus |
Su(z)2-PC | 1396 | CG3905-PC | 33..228 | 14..217 | 197 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16570-PA | 222 | GI16570-PA | 1..222 | 1..222 | 1176 | 99.5 | Plus |
Dmoj\GI19568-PA | 1552 | GI19568-PA | 213..428 | 3..217 | 317 | 35.4 | Plus |
Dmoj\GI19979-PA | 1449 | GI19979-PA | 21..232 | 6..217 | 225 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17870-PA | 222 | GL17870-PA | 1..222 | 1..222 | 1169 | 98.6 | Plus |
Dper\GL10594-PA | 1624 | GL10594-PA | 270..482 | 3..217 | 348 | 35.8 | Plus |
Dper\GL11486-PA | 1495 | GL11486-PA | 28..218 | 14..205 | 171 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18020-PA | 222 | GA18020-PA | 1..222 | 1..222 | 1169 | 98.6 | Plus |
Dpse\GA17752-PA | 1591 | GA17752-PA | 236..448 | 3..217 | 348 | 35.8 | Plus |
Dpse\GA24743-PA | 1490 | GA24743-PA | 28..217 | 14..205 | 176 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25646-PA | 222 | GM25646-PA | 1..222 | 1..222 | 1180 | 100 | Plus |
Dsec\GM20318-PA | 286 | GM20318-PA | 174..268 | 3..99 | 269 | 51.5 | Plus |
Dsec\GM21438-PA | 240 | GM21438-PA | 33..222 | 14..210 | 179 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14649-PA | 222 | GD14649-PA | 1..222 | 1..222 | 1180 | 100 | Plus |
Dsim\GD25796-PA | 324 | GD25796-PA | 261..321 | 3..63 | 192 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12822-PA | 222 | GJ12822-PA | 1..222 | 1..222 | 1180 | 100 | Plus |
Dvir\GJ21143-PA | 1561 | GJ21143-PA | 222..437 | 3..217 | 327 | 35 | Plus |
Dvir\GJ21231-PA | 1440 | GJ21231-PA | 22..232 | 6..217 | 232 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20319-PA | 222 | GK20319-PA | 1..222 | 1..222 | 1169 | 99.1 | Plus |
Dwil\GK20868-PA | 1574 | GK20868-PA | 231..444 | 5..217 | 333 | 35.7 | Plus |
Dwil\GK20772-PA | 1381 | GK20772-PA | 19..228 | 14..217 | 204 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19864-PA | 222 | GE19864-PA | 1..222 | 1..222 | 1180 | 100 | Plus |
Dyak\GE13404-PA | 1574 | GE13404-PA | 229..444 | 3..217 | 341 | 35.4 | Plus |
Dyak\GE12510-PA | 1360 | GE12510-PA | 42..238 | 14..217 | 188 | 27.2 | Plus |
Translation from 291 to 959
> RE11339.hyp MERRVKLKTINPHITCKICGGYFIDATTVTECLHTFCKSCLVKHLEEKKT CPTCDNIIHQSHPLQYISFDRTMQDIVYKLVPKLQEDESRRERDFYKSRN MPCPKDITQNHEDDNEKVMDAHAESDFHRLDEQVNVCLECISNNFKNLQR RFIRCSSQATITHLKKLVAKKILNGIEKYREIDILCNEELLGKDHTLKFV YVTRWRFRDPPLRLQFRPRVEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(3)73Ah-PA | 222 | CG4195-PA | 1..222 | 1..222 | 1202 | 100 | Plus |
l(3)73Ah-PB | 222 | CG4195-PB | 1..222 | 1..222 | 1202 | 100 | Plus |
Psc-PC | 1601 | CG3886-PC | 250..465 | 3..217 | 333 | 35 | Plus |
Psc-PB | 1601 | CG3886-PB | 250..465 | 3..217 | 333 | 35 | Plus |
Psc-PA | 1601 | CG3886-PA | 250..465 | 3..217 | 333 | 35 | Plus |