BDGP Sequence Production Resources |
Search the DGRC for RE11385
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 113 |
Well: | 85 |
Vector: | pFlc-1 |
Associated Gene/Transcript | GILT3-RA |
Protein status: | RE11385.pep: gold |
Sequenced Size: | 787 |
Gene | Date | Evidence |
---|---|---|
CG13822 | 2001-12-14 | Blastp of sequenced clone |
CG13822 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13822 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13822 | 2008-04-29 | Release 5.5 accounting |
CG13822 | 2008-08-15 | Release 5.9 accounting |
CG13822 | 2008-12-18 | 5.12 accounting |
787 bp (787 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071032
> RE11385.complete AGTTGTGTTTGGTTTGTGAGGCTGCCAAGAGCGAAAAACGAACGCGGACA ATGAATAAAATATTTGGGCTACTGTTTACCCTGTGTCTGCTGCTCGTTTG GCCCACGCCCGGAAATGGCCAGTCCCCGGATGAGTCCCGGCTCCTGGTGG CCATTCACTACGAGGCCCTGTGCCCGGACAGCATGAGCTTCATCCGGCGC AGATTGTACGATGCTCTGCAGGACAACGACTGGTGGTCGGTCACCGATCT AAAGCTATATCCATTTGGCAAGGCGGGGTTCTACAACAACACATCCACTG GCGAGAGCCAAGTATTTTGTCAGCATGGCGTGGATGAGTGCGAACTAAAT GCACTCCATGCCTGCATTATTGAGACCCTGGACATTCGGAAGGCCTTCAA TCTGATCTACTGCATGCTGCGCTCCTATTCGAATGAGCTGGGCCCGTGCT CGAGGAGCATGGGTGTGGACGTCAGCAAGGCCAGGGAGTGTAAGGCATCC CGAACCACGGCAGAAATACTGGCGCCCTACGGCAAGGAAACCCTTAAACT GGGCATCTCCTTTGTGCCCACCATTGTGTTCGAGAATGACTTTGATCCTT ACGACCAGAGAAGCATTCGCAACAACTTCGAAAGACACTTCTGTCGGCAG TATCTGAAAAAGTTCAACATCAAACTGCCCACTTGTTCCGCAATTTTGTA AACTTTTATGTAATGTACTGAGTAATTTAACTGTTTCAATGTTCCAAGAC CAATAAACAATAATTATAACCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13822-RA | 880 | CG13822-RA | 101..873 | 1..773 | 3865 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 19501279..19501589 | 278..588 | 1555 | 100 | Plus |
chr3R | 27901430 | chr3R | 19500782..19501059 | 1..278 | 1375 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 19501662..19501845 | 588..771 | 905 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 23677855..23678165 | 278..588 | 1555 | 100 | Plus |
3R | 32079331 | 3R | 23677360..23677637 | 1..278 | 1390 | 100 | Plus |
3R | 32079331 | 3R | 23678238..23678423 | 588..773 | 930 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23418686..23418996 | 278..588 | 1555 | 100 | Plus |
3R | 31820162 | 3R | 23418191..23418468 | 1..278 | 1390 | 100 | Plus |
3R | 31820162 | 3R | 23419069..23419254 | 588..773 | 930 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 2964..3014 | 256..205 | 113 | 71.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19500782..19501059 | 1..278 | 99 | -> | Plus |
chr3R | 19501280..19501588 | 279..587 | 100 | -> | Plus |
chr3R | 19501662..19501845 | 588..771 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13822-RA | 1..651 | 51..701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13822-RA | 1..651 | 51..701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13822-RA | 1..651 | 51..701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13822-RA | 1..651 | 51..701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GILT3-RA | 1..651 | 51..701 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13822-RA | 3..773 | 1..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13822-RA | 3..773 | 1..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13822-RA | 3..773 | 1..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13822-RA | 3..773 | 1..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GILT3-RA | 3..773 | 1..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23677360..23677637 | 1..278 | 100 | -> | Plus |
3R | 23677856..23678164 | 279..587 | 100 | -> | Plus |
3R | 23678238..23678421 | 588..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23677360..23677637 | 1..278 | 100 | -> | Plus |
3R | 23677856..23678164 | 279..587 | 100 | -> | Plus |
3R | 23678238..23678421 | 588..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23677360..23677637 | 1..278 | 100 | -> | Plus |
3R | 23677856..23678164 | 279..587 | 100 | -> | Plus |
3R | 23678238..23678421 | 588..771 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19503960..19504143 | 588..771 | 100 | Plus | |
arm_3R | 19503082..19503359 | 1..278 | 100 | -> | Plus |
arm_3R | 19503578..19503886 | 279..587 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23418191..23418468 | 1..278 | 100 | -> | Plus |
3R | 23418687..23418995 | 279..587 | 100 | -> | Plus |
3R | 23419069..23419252 | 588..771 | 100 | Plus |
Translation from 2 to 700
> RE11385.hyp LCLVCEAAKSEKRTRTMNKIFGLLFTLCLLLVWPTPGNGQSPDESRLLVA IHYEALCPDSMSFIRRRLYDALQDNDWWSVTDLKLYPFGKAGFYNNTSTG ESQVFCQHGVDECELNALHACIIETLDIRKAFNLIYCMLRSYSNELGPCS RSMGVDVSKARECKASRTTAEILAPYGKETLKLGISFVPTIVFENDFDPY DQRSIRNNFERHFCRQYLKKFNIKLPTCSAIL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GILT3-PA | 216 | CG13822-PA | 1..216 | 17..232 | 1161 | 100 | Plus |
GILT2-PA | 207 | CG10157-PA | 7..206 | 27..228 | 381 | 38.5 | Plus |
CG41378-PB | 228 | CG41378-PB | 5..195 | 13..194 | 187 | 28.7 | Plus |
CG41378-PC | 196 | CG41378-PC | 13..163 | 46..194 | 182 | 31 | Plus |
CG41378-PD | 205 | CG41378-PD | 22..172 | 46..194 | 182 | 31 | Plus |
Translation from 50 to 700
> RE11385.pep MNKIFGLLFTLCLLLVWPTPGNGQSPDESRLLVAIHYEALCPDSMSFIRR RLYDALQDNDWWSVTDLKLYPFGKAGFYNNTSTGESQVFCQHGVDECELN ALHACIIETLDIRKAFNLIYCMLRSYSNELGPCSRSMGVDVSKARECKAS RTTAEILAPYGKETLKLGISFVPTIVFENDFDPYDQRSIRNNFERHFCRQ YLKKFNIKLPTCSAIL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16248-PA | 226 | GF16248-PA | 1..225 | 1..212 | 843 | 71.6 | Plus |
Dana\GF16249-PA | 207 | GF16249-PA | 2..206 | 3..212 | 394 | 38.1 | Plus |
Dana\GF17383-PA | 251 | GF17383-PA | 23..211 | 29..202 | 194 | 29.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11212-PA | 218 | GG11212-PA | 1..218 | 1..215 | 980 | 86.2 | Plus |
Dere\GG11213-PA | 207 | GG11213-PA | 7..207 | 11..213 | 374 | 37.9 | Plus |
Dere\GG17054-PA | 250 | GG17054-PA | 23..209 | 29..199 | 193 | 27.4 | Plus |
Dere\GG17351-PA | 209 | GG17351-PA | 29..207 | 29..215 | 167 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18523-PA | 204 | GH18523-PA | 2..204 | 10..213 | 741 | 64.2 | Plus |
Dgri\GH14296-PA | 193 | GH14296-PA | 13..193 | 27..212 | 376 | 40.3 | Plus |
Dgri\GH18545-PA | 245 | GH18545-PA | 19..205 | 29..199 | 202 | 30 | Plus |
Dgri\GH19011-PA | 208 | GH19011-PA | 1..204 | 4..211 | 156 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GILT3-PA | 216 | CG13822-PA | 1..216 | 1..216 | 1161 | 100 | Plus |
GILT2-PA | 207 | CG10157-PA | 7..206 | 11..212 | 381 | 38.5 | Plus |
CG41378-PB | 228 | CG41378-PB | 11..195 | 3..178 | 183 | 28.6 | Plus |
CG41378-PC | 196 | CG41378-PC | 13..163 | 30..178 | 182 | 31 | Plus |
CG41378-PD | 205 | CG41378-PD | 22..172 | 30..178 | 182 | 31 | Plus |
CG9427-PA | 213 | CG9427-PA | 33..211 | 29..215 | 164 | 28.3 | Plus |
CG9427-PB | 212 | CG9427-PB | 33..210 | 30..215 | 162 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22060-PA | 234 | GI22060-PA | 40..233 | 18..212 | 736 | 68.2 | Plus |
Dmoj\GI23191-PA | 206 | GI23191-PA | 2..206 | 3..212 | 396 | 37.1 | Plus |
Dmoj\GI23244-PA | 245 | GI23244-PA | 19..205 | 29..199 | 201 | 31.6 | Plus |
Dmoj\GI23067-PA | 208 | GI23067-PA | 1..204 | 1..211 | 161 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13648-PA | 224 | GL13648-PA | 1..223 | 1..212 | 792 | 67.7 | Plus |
Dper\GL13649-PA | 210 | GL13649-PA | 5..209 | 4..212 | 361 | 34.8 | Plus |
Dper\GL23064-PA | 250 | GL23064-PA | 23..237 | 29..216 | 199 | 28 | Plus |
Dper\GL22172-PA | 217 | GL22172-PA | 10..215 | 1..215 | 162 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12550-PA | 214 | GA12550-PA | 1..213 | 1..212 | 813 | 70.9 | Plus |
Dpse\GA10118-PA | 210 | GA10118-PA | 5..209 | 4..212 | 361 | 34.8 | Plus |
Dpse\GA24052-PA | 250 | GA24052-PA | 23..209 | 29..199 | 199 | 28.9 | Plus |
Dpse\GA22042-PA | 250 | GA22042-PA | 23..209 | 29..199 | 199 | 28.9 | Plus |
Dpse\GA21779-PA | 217 | GA21779-PA | 10..215 | 1..215 | 160 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26511-PA | 216 | GM26511-PA | 1..216 | 1..216 | 1098 | 94.4 | Plus |
Dsec\GM26512-PA | 208 | GM26512-PA | 3..208 | 6..213 | 374 | 37.4 | Plus |
Dsec\GM25939-PA | 250 | GM25939-PA | 23..211 | 29..202 | 189 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21020-PA | 172 | GD21020-PA | 1..172 | 45..216 | 882 | 95.3 | Plus |
Dsim\GD21021-PA | 208 | GD21021-PA | 3..208 | 6..213 | 377 | 37.4 | Plus |
Dsim\GD20500-PA | 250 | GD20500-PA | 23..192 | 29..182 | 184 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24109-PA | 230 | GJ24109-PA | 36..229 | 19..212 | 703 | 64.4 | Plus |
Dvir\GJ14507-PA | 204 | GJ14507-PA | 7..191 | 23..212 | 382 | 40 | Plus |
Dvir\GJ10741-PA | 244 | GJ10741-PA | 19..205 | 29..199 | 195 | 30 | Plus |
Dvir\GJ24579-PA | 209 | GJ24579-PA | 1..205 | 1..211 | 171 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13874-PA | 223 | GK13874-PA | 33..222 | 24..213 | 745 | 70 | Plus |
Dwil\GK13875-PA | 209 | GK13875-PA | 31..209 | 29..212 | 372 | 40.2 | Plus |
Dwil\GK13347-PA | 232 | GK13347-PA | 22..208 | 29..199 | 194 | 29.5 | Plus |
Dwil\GK11854-PA | 217 | GK11854-PA | 33..200 | 29..198 | 152 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10376-PA | 472 | GE10376-PA | 337..472 | 77..212 | 694 | 93.4 | Plus |
Dyak\GE10377-PA | 207 | GE10377-PA | 7..206 | 11..212 | 363 | 39.5 | Plus |
Dyak\GE24442-PA | 250 | GE24442-PA | 23..211 | 29..202 | 184 | 27.5 | Plus |