Clone RE11449 Report

Search the DGRC for RE11449

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:114
Well:49
Vector:pFlc-1
Associated Gene/TranscriptDys-RE
Protein status:RE11449.pep: gold
Preliminary Size:1190
Sequenced Size:4541

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7344 2002-01-01 Sim4 clustering to Release 2
CG7344 2003-01-01 Sim4 clustering to Release 3
CG31175 2003-08-05 Blastp of sequenced clone
Dys 2008-04-29 Release 5.5 accounting
Dys 2008-08-15 Release 5.9 accounting
det 2008-12-18 5.12 accounting

Clone Sequence Records

RE11449.complete Sequence

4541 bp (4541 high quality bases) assembled on 2003-08-05

GenBank Submission: BT010020

> RE11449.complete
AGTTTTCGAAGCGGCGGCGCGTAAGCTGGTTGCGTTTTTTGTCGCGATCG
CGATCTGCCGGTAAAAAAAAAGAACACAAAAAGTATACTAGCCATGAAAA
AAATTCAAATTCCTAACTCAAGGATCTTTTTTAAAAAAAAACCGTAACCT
CACAGAAAAGTGTTTAAAATAAGCGCATAAAAACAACGTTCATTACGCAA
GAATGTGCCCTAAAACGATGCAACCAAGTGCCTAAGTTTTTGTTCGGGAG
GAGCAGCATCATCAGCGAAAACCTGAAATCTGCATAGAGCAAGATTAATT
AACTCGCCCCGCCAGACGATCAGCAACGTCGGACAGCGAGGAGCAGCAGC
AGCGATATCAACGGCAACATCAGGAGCCACTGCAGCAGGAGTAACAATCT
GCAGCAACATCGGTGGCAGCAGCAACATCCACTGCAACTGCAGCAACTTC
AATTGCTGGAAAAAGGGCAGCAACCATATCTCGAGCCTAAGCAACATATG
CAGCATCTGTAGCAGCAACAGAAACAGAAGAAAGAAGAATCAGCAACACT
AGTTGCAACATACGCAGCACCAGCAACACCAACTAAAACAATAGCTTAAG
TAAAGGGAACCCCTTGCTGGAACAGCTTGTCTAGGATGCGACTCTTTGCC
AGCAGTGGCCAGGCTGCAACATCGCCAGCACTGGCCCACAGTTCCAGCGA
TGAGGCTGGCGAGGTCATTGAGAATTCCCATACCAAGAGAGCAGGATGCT
CCGTGCTGCAGAGCAGTGGTGGAAAGTCAAGGTCGCTGGAGCGTTACTCG
GGAGCACCCAAGATACACCAGCAGACGTTGGAGATGCTGCCGCCCTATGC
CACGCCCACGTGCAGCACCCGTCGCCGACTCCTCGCCCCCTTTCGATCGC
TGAAGCGTCGCAGTCGGAGCAGCAGCAGCAGCAATGAGTCGCACCACTTT
GGCAACCATCTCAACAACCTGGTGGTGGTCAATGTAGGGGCGGCCGCTGC
AAATGGAGGTGTGGCCAAGGCCAAGGCGAAGGCCAGCTCCCAAAGCGGTG
ACAGTGGAACCGGTGGCACCGAATTGGAGCATGAAATGGAACAGGATGAC
GACGAGGAGGATGAGGAGGAGGGCGAGGAGATGGACGAACTGAGCCTGAG
TTACTCGCAGTTGAGCAGCAGTGGCTGCGAGGAAGCCGAAGCTCCACCAG
AAGATGTTCCTGATGATCGACAAGCAGCTGTGGAGGCAACAGTCTCTGCC
TGCGTGCAACACGTTGCCAATGAGCGGCGACGCAACATCCTGTCGCTGTA
CTCGTCCTCGTCGGAGGAGCAGCTCCACTGCCGCCTGGGCGACATTACGC
TGGTGGACGATACCTACTCCAACTACGATCCGCAAAACGATGCCGAGCGC
ATGTTCCTCCAGGTTGTCGGAATCTTACGCGATGAGAATGAGAAAATGCG
TCAGTTCCAGAAGATCCTGGAGGATCTTAGCTCCCGCGTTGCCCTTGCCG
AGCAGACAAAAACCTCCTGGCTGCCACCCTCATCCGTGGGCGAGGCCAAT
GAGCAGATGCAACAGTTGCAGCGCCTGAGGGACAAGATGACGACGGCCAG
TGCATTGCTGGATGATTGCAACGAGCAGCAGTCCTTCTTCACCGCCAATC
AGGTCCTGGTACCCACACCCTGCCTCTCCAAGCTGGAGGACTTAAACACG
CGCATGAAACTCCTGCAAATCGCGATGGACGAGCGCCAGAAGGTCCTTTG
TCAGGCTGGAGCCCAGCAGACGCACGAGAACGGCGACGACGGACGCACCA
CATCGAACAGCGGCACCATTGGACCACTGCCCAATCTCGGCCAGAGCGTG
AAGCCGCCATGGGAGCGGGCCACCACAGCCGCCAATGTGCCTTACTATAT
CGACCACGAACGCGAGACCACGCACTGGGACCATCCGGAGATGATTGAGC
TGATGAAGGGCCTGGCAGATCTCAACGAGATACGCTTTTCCGCCTACAGA
ACGGCCATGAAACTGCGATCAGTTCAGAAGCGATTGGCTCTCGACAGGAT
TAGCATGTCCACCGCCTGCGAGTCCTTCGATCGACATGGCCTGCGTGCCC
AAAACGACAAGCTGATCGACATACCCGACATGACCACGGTGCTGCATTCG
CTCTACGTGACAATCGATAAAATTGATTTGACGCTAATGCTGGACCTGGC
CATTAACTGGATCCTGAATGTCTACGACTCACAGAGGACCGGCCAAATCC
GTGTCCTCAGCTTCAAGGTCGGACTGGTCCTCCTCTGCAAGGGTCACCTG
GAGGAGAAGTATCGCTATCTGTTCCGCCTGGTTGCAGACACTGACCGACG
AGCGGATCAGAGGCGACTGGGACTCCTGCTGCACGATTGCATTCAGGTAC
CCCGCCAACTAGGTGAAGTAGCCGCTTTTGGTGGCTCCAACATAGAGCCC
TCGGTGAGATCCTGTCTGGAGCAGGCTGGCATCTCGCAGGAGGCCATCGA
TGGCAACCAGGACATCTCCATCGAGCTGCAGCACTTCCTCGGCTGGCTGC
AGCATGAACCGCAGAGCCTCGTGTGGCTTCCGGTGCTCCATCGCCTGGCG
GCGGCGGAGGCGGCCAAGCACCAGGCCAAATGCAACATCTGCAAGGAGTA
CCCGATCGTCGGCTTCCGCTACAGATGCCTCAAGTGCTTCAACTTCGACA
TGTGCCAAAAGTGTTTCTTCTTCGGCCGCAACGCCAAGAACCACAAGCTA
ACTCATCCCATGCACGAGTACTGCACCACTACCACATCCACCGAGGACGT
TCGTGACTTTACACGCGCCCTGAAGAACAAATTCAAGAGTCGCAAATACT
TTAAAAAGCATCCAAGAGTGGGATACCTGCCCGTTCAGAGTGTTTTGGAA
GGTGATGCTCTGGAGAGTCCGGCGCCAAGTCCGCAGCACACAACCCACCA
GCTGCAGAACGACATGCACTCCCGCCTGGAGATGTACGCCTCGCGACTGG
CTCAGGTGGAGTACGGCGGAACGGGCTCGAATTCCACGCCGGACAGTGAT
GATGAGCACCAACTGATCGCTCAGTATTGCCAGGCTCTGCCCGGAACTTC
AAATGGAAGTGCACCCAAGTCGCCTGTCCAAGTAATGGCCGCCATGGATG
CCGAGCAGCGGGAAGAACTAGAGGCGATCATCCGCGATCTTGAGGAGGAA
AACGCCAACCTGCAGGCAGAGTACCAGCAATTGTGCAGCAAGGAGCAGAG
CGGCATGCCCGAGGACTCCAATGGCATGCAACACTCCAGTTCCAGCATGA
CGGGTCTTTCTGGCCAGGGCGAGCAAGGCCAGGACATGATGGCGGAAGCG
AAGCTGCTGCGCCAGCACAAGGGACGCCTTGAGGCGCGCATGCAAATCCT
GGAGGATCACAATCGGCAACTGGAAGCTCAGTTGCAGCGACTACGCCAAC
TTCTCGATGAACCCAATGGCGGCGGCAGTAGCGCCACCAGCAGCGGTCTA
CCCAGCGCTCCCGGTTCCGCATTGAACTCCAAACCCAATACCCTCCAGAC
CCGGTCGGTGACCGCCTCGCAATTGAACACGGACTCACCGGCAAAGATGA
ACCAACAGAACGGCCACTACGAGCACAACTCAAAGAACTCAAGTGGCCTA
GTGACCGTAATCACAGAGCAGGAATTGGAGAGCATCAACGATGATCTGGA
GGACTCGTCGAGCAGCAACACTACGAACACCACGACGACGACGACGACCA
CGGCAACCACGGAGAAAACTTGCGTGGAGCTGCAAAAATAACACCTTCGA
TACTTAATTGCATGGCATTCAACTATGAAACAAAACAATGAAACAGTATA
TGAATCCAAAAGAATTAAATGCATGTGAGGAAATCCAATTGGCTGGCCTG
CAAAACATTCTAAATAATCATACCTAAACACCTAAAGATAGATCCATATA
ACTATTGTGGTACATATATTTATACACTATTGCGAAGAATCAGATGGAAA
AGAATTTCAAGAAGAGCTTCGAGTAAGCTGAGAACACTTTTTAGTAGTTA
TGAAAGATACAAATCTATATATATTATATACAAATATCGAAGCATAAGTG
AGACATATTGAAAGCTGGAAATAATGCAGAAATGATTTAAAGATTAGATA
AGCTGTAACTCCAACACATACTTACATCCAATGATATAATAAAAAAGAAA
CAACTATATCATAAATGAAACATATTCATAATTTCCTAGTACATGAAAAA
TTGTTATAACTCGCACCTTTTTCAAACAACTGATAGGAAGCAAATCAATT
TCAAAGATACAAGAAGAACCAGCTAACAGTTTTTGGTTAGCTTTCATATC
ATTTTAAAGCTTATACAATAAGTGTTTTAAATGTAAATTTCGAAACATGC
AATCAGTTTTAATTTGTATCCTTATTTATTCCGATTTCTTGTGTATTATT
TCTTAATATTATTTAATATTAATATCTGTGCTAACTGAAAGTGTGCTGCA
ATGTTTTTAATTAAAGAACTATTATTAAAAAAAAAAAAAAA

RE11449.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dystrophin-RE 4526 Dystrophin-RE 1..4526 1..4526 22630 100 Plus
Dystrophin.e 4440 Dystrophin.e 80..4440 166..4526 21805 100 Plus
Dystrophin.p 6512 Dystrophin.p 156..4516 169..4529 21805 100 Plus
Dystrophin.e 4440 Dystrophin.e 1..82 1..82 410 100 Plus
Dystrophin.p 6512 Dystrophin.p 96..159 1..64 305 98.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15409111..15410384 169..1442 6370 100 Plus
chr3R 27901430 chr3R 15418359..15419251 3634..4526 4450 99.9 Plus
chr3R 27901430 chr3R 15416199..15416632 2900..3333 2140 99.5 Plus
chr3R 27901430 chr3R 15415523..15415908 2395..2780 1840 98.4 Plus
chr3R 27901430 chr3R 15414823..15415184 2037..2398 1780 99.4 Plus
chr3R 27901430 chr3R 15416691..15416994 3330..3633 1505 99.7 Plus
chr3R 27901430 chr3R 15413988..15414249 1441..1702 1295 99.6 Plus
chr3R 27901430 chr3R 15414310..15414511 1702..1903 995 99.5 Plus
chr3R 27901430 chr3R 15393106..15393273 1..168 825 99.4 Plus
chr3R 27901430 chr3R 15414625..15414758 1904..2037 670 100 Plus
chr3R 27901430 chr3R 15415980..15416102 2781..2903 600 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 20:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
snoRNA:Me18S-A1374-RA 68 CR33634-RA 1..68 1124..1191 340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19585241..19586514 169..1442 6370 100 Plus
3R 32079331 3R 19594500..19595395 3634..4529 4480 100 Plus
3R 32079331 3R 19592328..19592761 2900..3333 2170 100 Plus
3R 32079331 3R 19591656..19592041 2395..2780 1930 100 Plus
3R 32079331 3R 19590957..19591318 2037..2398 1810 100 Plus
3R 32079331 3R 19592820..19593123 3330..3633 1520 100 Plus
3R 32079331 3R 19590122..19590383 1441..1702 1310 100 Plus
3R 32079331 3R 19590444..19590645 1702..1903 1010 100 Plus
3R 32079331 3R 19569212..19569379 1..168 840 100 Plus
3R 32079331 3R 19590759..19590892 1904..2037 670 100 Plus
3R 32079331 3R 19592109..19592231 2781..2903 615 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19326072..19327345 169..1442 6370 100 Plus
3R 31820162 3R 19335331..19336226 3634..4529 4480 100 Plus
3R 31820162 3R 19333159..19333592 2900..3333 2170 100 Plus
3R 31820162 3R 19332487..19332872 2395..2780 1930 100 Plus
3R 31820162 3R 19331788..19332149 2037..2398 1810 100 Plus
3R 31820162 3R 19333651..19333954 3330..3633 1520 100 Plus
3R 31820162 3R 19330953..19331214 1441..1702 1310 100 Plus
3R 31820162 3R 19331275..19331476 1702..1903 1010 100 Plus
3R 31820162 3R 19310043..19310210 1..168 840 100 Plus
3R 31820162 3R 19331590..19331723 1904..2037 670 100 Plus
3R 31820162 3R 19332940..19333062 2781..2903 615 100 Plus
Blast to na_te.dros performed 2019-03-15 22:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2767..2999 357..594 358 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..7013 319..589 340 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2292..2532 349..595 330 61.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6642..6951 264..581 330 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2699 249..609 323 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6914 402..595 319 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6956 339..556 308 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6924 383..584 301 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2297..2524 297..526 298 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2640 319..595 283 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2243..2503 334..602 272 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2296..2553 450..703 270 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6893 432..610 251 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6863 444..595 235 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2685 245..568 232 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..6941 252..447 228 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2303..2420 488..603 225 66.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2633..2976 247..595 220 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2871 311..595 215 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6839 460..595 215 66.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2758..2998 249..505 210 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2410..2855 252..700 200 54.7 Plus
roo 9092 roo DM_ROO 9092bp 1062..1163 342..441 199 68.9 Plus
roo 9092 roo DM_ROO 9092bp 1062..1161 342..451 195 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6809 500..583 192 71.4 Plus
roo 9092 roo DM_ROO 9092bp 1074..1173 490..593 186 67.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3192..3437 345..593 185 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2826 375..595 183 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7153..7453 320..626 169 55.3 Plus
roo 9092 roo DM_ROO 9092bp 1059..1147 360..452 168 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..7096 252..588 165 55.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1519..1640 375..498 155 63.8 Plus
roo 9092 roo DM_ROO 9092bp 1040..1165 423..546 138 58.7 Plus
Dvir\Paris 1730 Dvir\Paris TV1 1730bp Derived from Z49253. 1432..1502 3971..3899 135 67.1 Minus
1360 3409 1360 1360 3409bp 2928..3039 4460..4347 131 62.9 Minus
Doc2-element 4789 Doc2-element DOC2 4789bp 550..662 420..529 125 60.5 Plus

RE11449.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:37:49 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15393106..15393273 1..168 99 -> Plus
chr3R 15409111..15409283 169..341 100 == Plus
chr3R 15409391..15409431 449..489 100 == Plus
chr3R 15409538..15410017 596..1075 100 == Plus
chr3R 15410081..15410384 1139..1442 100 -> Plus
chr3R 15413990..15414249 1443..1702 99 -> Plus
chr3R 15414311..15414511 1703..1903 99 -> Plus
chr3R 15414625..15414758 1904..2037 100 -> Plus
chr3R 15414824..15415182 2038..2396 99 -> Plus
chr3R 15415525..15415908 2397..2780 98 -> Plus
chr3R 15415980..15416100 2781..2901 99 -> Plus
chr3R 15416201..15416631 2902..3332 99 -> Plus
chr3R 15416694..15416994 3333..3633 99 -> Plus
chr3R 15418359..15419251 3634..4526 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:04:51 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
det-RE 1..3156 636..3791 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:36 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
Dys-RE 1..3156 636..3791 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:27:23 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
Dys-RE 1..3156 636..3791 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:57 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
Dys-RE 1..3156 636..3791 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:30:17 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
Dys-RE 1..3156 636..3791 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 20:33:47 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
snoRNA:Me18S-A1374-RA 1..68 1124..1191 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:04:50 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
det-RE 1..4526 1..4526 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:36 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
Dys-RE 1..4526 1..4526 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:27:23 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
Dys-RE 3..170 1..168 100 -> Plus
Dys-RE 464..4821 169..4526 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:58 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
Dys-RE 1..4526 1..4526 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:30:17 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
Dys-RE 3..170 1..168 100 -> Plus
Dys-RE 464..4821 169..4526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:49 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19569212..19569379 1..168 100 -> Plus
3R 19585241..19586514 169..1442 100 -> Plus
3R 19590124..19590383 1443..1702 100 -> Plus
3R 19590445..19590645 1703..1903 100 -> Plus
3R 19590759..19590892 1904..2037 100 -> Plus
3R 19590958..19591316 2038..2396 100 -> Plus
3R 19591658..19592041 2397..2780 100 -> Plus
3R 19592109..19592229 2781..2901 100 -> Plus
3R 19592330..19592760 2902..3332 100 -> Plus
3R 19592823..19593123 3333..3633 100 -> Plus
3R 19594500..19595392 3634..4526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:49 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19569212..19569379 1..168 100 -> Plus
3R 19585241..19586514 169..1442 100 -> Plus
3R 19590124..19590383 1443..1702 100 -> Plus
3R 19590445..19590645 1703..1903 100 -> Plus
3R 19590759..19590892 1904..2037 100 -> Plus
3R 19590958..19591316 2038..2396 100 -> Plus
3R 19591658..19592041 2397..2780 100 -> Plus
3R 19592109..19592229 2781..2901 100 -> Plus
3R 19592330..19592760 2902..3332 100 -> Plus
3R 19592823..19593123 3333..3633 100 -> Plus
3R 19594500..19595392 3634..4526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:49 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19569212..19569379 1..168 100 -> Plus
3R 19585241..19586514 169..1442 100 -> Plus
3R 19590124..19590383 1443..1702 100 -> Plus
3R 19590445..19590645 1703..1903 100 -> Plus
3R 19590759..19590892 1904..2037 100 -> Plus
3R 19590958..19591316 2038..2396 100 -> Plus
3R 19591658..19592041 2397..2780 100 -> Plus
3R 19592109..19592229 2781..2901 100 -> Plus
3R 19592330..19592760 2902..3332 100 -> Plus
3R 19592823..19593123 3333..3633 100 -> Plus
3R 19594500..19595392 3634..4526 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:27:23 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15394934..15395101 1..168 100 -> Plus
arm_3R 15410963..15412236 169..1442 100 -> Plus
arm_3R 15415846..15416105 1443..1702 100 -> Plus
arm_3R 15416167..15416367 1703..1903 100 -> Plus
arm_3R 15416481..15416614 1904..2037 100 -> Plus
arm_3R 15416680..15417038 2038..2396 100 -> Plus
arm_3R 15417380..15417763 2397..2780 100 -> Plus
arm_3R 15417831..15417951 2781..2901 100 -> Plus
arm_3R 15418052..15418482 2902..3332 100 -> Plus
arm_3R 15418545..15418845 3333..3633 100 -> Plus
arm_3R 15420222..15421114 3634..4526 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:25 Download gff for RE11449.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19326072..19327345 169..1442 100 -> Plus
3R 19330955..19331214 1443..1702 100 -> Plus
3R 19331276..19331476 1703..1903 100 -> Plus
3R 19331590..19331723 1904..2037 100 -> Plus
3R 19331789..19332147 2038..2396 100 -> Plus
3R 19332489..19332872 2397..2780 100 -> Plus
3R 19332940..19333060 2781..2901 100 -> Plus
3R 19333161..19333591 2902..3332 100 -> Plus
3R 19333654..19333954 3333..3633 100 -> Plus
3R 19335331..19336223 3634..4526 100   Plus
3R 19310043..19310210 1..168 100 -> Plus

RE11449.hyp Sequence

Translation from 635 to 3790

> RE11449.hyp
MRLFASSGQAATSPALAHSSSDEAGEVIENSHTKRAGCSVLQSSGGKSRS
LERYSGAPKIHQQTLEMLPPYATPTCSTRRRLLAPFRSLKRRSRSSSSSN
ESHHFGNHLNNLVVVNVGAAAANGGVAKAKAKASSQSGDSGTGGTELEHE
MEQDDDEEDEEEGEEMDELSLSYSQLSSSGCEEAEAPPEDVPDDRQAAVE
ATVSACVQHVANERRRNILSLYSSSSEEQLHCRLGDITLVDDTYSNYDPQ
NDAERMFLQVVGILRDENEKMRQFQKILEDLSSRVALAEQTKTSWLPPSS
VGEANEQMQQLQRLRDKMTTASALLDDCNEQQSFFTANQVLVPTPCLSKL
EDLNTRMKLLQIAMDERQKVLCQAGAQQTHENGDDGRTTSNSGTIGPLPN
LGQSVKPPWERATTAANVPYYIDHERETTHWDHPEMIELMKGLADLNEIR
FSAYRTAMKLRSVQKRLALDRISMSTACESFDRHGLRAQNDKLIDIPDMT
TVLHSLYVTIDKIDLTLMLDLAINWILNVYDSQRTGQIRVLSFKVGLVLL
CKGHLEEKYRYLFRLVADTDRRADQRRLGLLLHDCIQVPRQLGEVAAFGG
SNIEPSVRSCLEQAGISQEAIDGNQDISIELQHFLGWLQHEPQSLVWLPV
LHRLAAAEAAKHQAKCNICKEYPIVGFRYRCLKCFNFDMCQKCFFFGRNA
KNHKLTHPMHEYCTTTTSTEDVRDFTRALKNKFKSRKYFKKHPRVGYLPV
QSVLEGDALESPAPSPQHTTHQLQNDMHSRLEMYASRLAQVEYGGTGSNS
TPDSDDEHQLIAQYCQALPGTSNGSAPKSPVQVMAAMDAEQREELEAIIR
DLEEENANLQAEYQQLCSKEQSGMPEDSNGMQHSSSSMTGLSGQGEQGQD
MMAEAKLLRQHKGRLEARMQILEDHNRQLEAQLQRLRQLLDEPNGGGSSA
TSSGLPSAPGSALNSKPNTLQTRSVTASQLNTDSPAKMNQQNGHYEHNSK
NSSGLVTVITEQELESINDDLEDSSSSNTTNTTTTTTTTATTEKTCVELQ
K*

RE11449.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dys-PE 1051 CG34157-PE 1..1051 1..1051 5430 100 Plus
Dys-PJ 1152 CG34157-PJ 1..1000 1..1000 5180 100 Plus
Dys-PL 1323 CG34157-PL 441..1323 193..1051 4069 90.5 Plus
Dys-PK 3144 CG34157-PK 2262..3144 193..1051 4069 90.5 Plus
Dys-PG 3504 CG34157-PG 2639..3504 193..1051 4068 91.3 Plus

RE11449.pep Sequence

Translation from 635 to 3790

> RE11449.pep
MRLFASSGQAATSPALAHSSSDEAGEVIENSHTKRAGCSVLQSSGGKSRS
LERYSGAPKIHQQTLEMLPPYATPTCSTRRRLLAPFRSLKRRSRSSSSSN
ESHHFGNHLNNLVVVNVGAAAANGGVAKAKAKASSQSGDSGTGGTELEHE
MEQDDDEEDEEEGEEMDELSLSYSQLSSSGCEEAEAPPEDVPDDRQAAVE
ATVSACVQHVANERRRNILSLYSSSSEEQLHCRLGDITLVDDTYSNYDPQ
NDAERMFLQVVGILRDENEKMRQFQKILEDLSSRVALAEQTKTSWLPPSS
VGEANEQMQQLQRLRDKMTTASALLDDCNEQQSFFTANQVLVPTPCLSKL
EDLNTRMKLLQIAMDERQKVLCQAGAQQTHENGDDGRTTSNSGTIGPLPN
LGQSVKPPWERATTAANVPYYIDHERETTHWDHPEMIELMKGLADLNEIR
FSAYRTAMKLRSVQKRLALDRISMSTACESFDRHGLRAQNDKLIDIPDMT
TVLHSLYVTIDKIDLTLMLDLAINWILNVYDSQRTGQIRVLSFKVGLVLL
CKGHLEEKYRYLFRLVADTDRRADQRRLGLLLHDCIQVPRQLGEVAAFGG
SNIEPSVRSCLEQAGISQEAIDGNQDISIELQHFLGWLQHEPQSLVWLPV
LHRLAAAEAAKHQAKCNICKEYPIVGFRYRCLKCFNFDMCQKCFFFGRNA
KNHKLTHPMHEYCTTTTSTEDVRDFTRALKNKFKSRKYFKKHPRVGYLPV
QSVLEGDALESPAPSPQHTTHQLQNDMHSRLEMYASRLAQVEYGGTGSNS
TPDSDDEHQLIAQYCQALPGTSNGSAPKSPVQVMAAMDAEQREELEAIIR
DLEEENANLQAEYQQLCSKEQSGMPEDSNGMQHSSSSMTGLSGQGEQGQD
MMAEAKLLRQHKGRLEARMQILEDHNRQLEAQLQRLRQLLDEPNGGGSSA
TSSGLPSAPGSALNSKPNTLQTRSVTASQLNTDSPAKMNQQNGHYEHNSK
NSSGLVTVITEQELESINDDLEDSSSSNTTNTTTTTTTTATTEKTCVELQ
K*

RE11449.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16554-PA 3497 GF16554-PA 2716..3497 270..1051 4031 97.6 Plus
Dana\GF12513-PA 714 GF12513-PA 15..520 443..956 476 25.6 Plus
Dana\GF21234-PA 657 GF21234-PA 60..345 450..729 245 26.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23350-PA 1694 GG23350-PA 914..1694 270..1051 4041 98.7 Plus
Dere\GG20305-PA 727 GG20305-PA 15..539 443..962 481 26.3 Plus
Dere\GG17875-PA 645 GG17875-PA 42..343 435..729 231 25.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22298-PA 1700 GH22298-PA 923..1673 270..1022 3895 94.8 Plus
Dgri\GH21967-PA 822 GH21967-PA 15..519 443..956 478 25.7 Plus
Dgri\GH24488-PA 689 GH24488-PA 44..316 436..694 217 25.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dys-PE 1051 CG34157-PE 1..1051 1..1051 5430 100 Plus
Dys-PJ 1152 CG34157-PJ 1..1000 1..1000 5180 100 Plus
Dys-PL 1323 CG34157-PL 441..1323 193..1051 4069 90.5 Plus
Dys-PK 3144 CG34157-PK 2262..3144 193..1051 4069 90.5 Plus
Dys-PG 3504 CG34157-PG 2639..3504 193..1051 4068 91.3 Plus
Dys-PF 3529 CG34157-PF 2664..3529 193..1051 4068 91.3 Plus
Dys-PD 1854 CG34157-PD 989..1854 193..1051 4068 91.3 Plus
Dys-PB 1669 CG34157-PB 804..1669 193..1051 4068 91.3 Plus
Dys-PC 3127 CG34157-PC 2262..3127 193..1051 4068 91.3 Plus
Dys-PA 3497 CG34157-PA 2632..3497 193..1051 4068 91.3 Plus
Dys-PI 3228 CG34157-PI 2294..3125 193..1000 3819 89.9 Plus
Dys-PH 3598 CG34157-PH 2632..3446 193..1000 3818 90.7 Plus
Dyb-PI 702 CG8529-PI 15..621 443..1042 500 24.9 Plus
Dyb-PF 816 CG8529-PF 15..621 443..1042 500 24.9 Plus
Dyb-PA 614 CG8529-PA 15..607 443..1028 488 24.8 Plus
Dyb-PC 623 CG8529-PC 24..616 443..1028 488 24.8 Plus
Dyb-PD 646 CG8529-PD 15..607 443..1028 488 24.8 Plus
Dyb-PH 655 CG8529-PH 24..616 443..1028 488 24.8 Plus
Dyb-PG 735 CG8529-PG 15..607 443..1028 488 24.8 Plus
dah-PA 649 CG6157-PA 53..343 445..729 218 25.9 Plus
dah-PB 646 CG6157-PB 53..340 445..729 197 25.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23105-PA 1666 GI23105-PA 887..1666 270..1051 3807 93.9 Plus
Dmoj\GI19671-PA 788 GI19671-PA 15..529 443..956 480 25.8 Plus
Dmoj\GI10895-PA 686 GI10895-PA 57..318 445..694 208 24.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12656-PA 888 GL12656-PA 1..733 271..1000 3693 95 Plus
Dper\GL17134-PA 816 GL17134-PA 15..528 443..956 472 25.7 Plus
Dper\GL12655-PA 1045 GL12655-PA 963..1027 205..269 272 92.3 Plus
Dper\GL14572-PA 649 GL14572-PA 43..336 444..729 238 25.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30238-PD 1027 GA30238-PD 1..1019 1..999 4209 84.1 Plus
Dpse\GA30238-PA 3413 GA30238-PA 2673..3405 270..999 3740 95 Plus
Dpse\GA30238-PC 1852 GA30238-PC 1112..1844 270..999 3723 95 Plus
Dpse\GA30238-PB 1651 GA30238-PB 911..1643 270..999 3716 95 Plus
Dpse\GA21140-PC 656 GA21140-PC 15..528 443..956 471 25.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26846-PA 781 GM26846-PA 1..781 271..1051 4228 99.4 Plus
Dsec\GM26847-PA 310 GM26847-PA 1..269 1..269 1378 97.4 Plus
Dsec\GM21392-PA 836 GM21392-PA 24..548 443..962 475 26.3 Plus
Dsec\GM19870-PA 649 GM19870-PA 53..343 445..729 238 25.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19295-PA 781 GD19295-PA 1..781 271..1051 4238 99.6 Plus
Dsim\GD10888-PA 741 GD10888-PA 24..637 443..1047 483 24.7 Plus
Dsim\GD19296-PA 87 GD19296-PA 1..60 1..60 284 93.3 Plus
Dsim\GD17206-PA 649 GD17206-PA 53..343 445..729 236 25.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22727-PA 1664 GJ22727-PA 885..1637 270..1022 3876 95.5 Plus
Dvir\GJ15037-PA 792 GJ15037-PA 16..548 443..972 478 25.7 Plus
Dvir\GJ16570-PA 657 GJ16570-PA 60..316 450..694 229 25.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13817-PA 1700 GK13817-PA 896..1646 270..1018 3830 95.6 Plus
Dwil\GK22187-PA 795 GK22187-PA 15..290 443..722 420 30 Plus
Dwil\GK20020-PA 645 GK20020-PA 27..296 436..694 247 24.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25609-PA 1800 GE25609-PA 1021..1800 270..1050 4053 99.1 Plus
Dyak\GE12465-PA 735 GE12465-PA 15..539 443..962 477 26.3 Plus
Dyak\GE17179-PA 645 GE17179-PA 42..343 435..729 238 25.6 Plus