BDGP Sequence Production Resources |
Search the DGRC for RE11491
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 114 |
Well: | 91 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ctr1B-RA |
Protein status: | RE11491.pep: gold |
Preliminary Size: | 628 |
Sequenced Size: | 963 |
Gene | Date | Evidence |
---|---|---|
CG7459 | 2001-12-14 | Blastp of sequenced clone |
CG7459 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7459 | 2003-01-01 | Sim4 clustering to Release 3 |
Ctr1B | 2008-04-29 | Release 5.5 accounting |
Ctr1B | 2008-08-15 | Release 5.9 accounting |
Ctr1B | 2008-12-18 | 5.12 accounting |
963 bp (963 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071033
> RE11491.complete CGGGTCAACGCTCTGCTCTCAGCACCTCAGCAGGTCTAGCTCTTATCACT GTGCCTCCCCGATCGCCAGTCGGATTTTCCACGCCTTCTATCTATATCTA TACTACACCAGCAGCCCAAGATGGATCACGGCTCGGATGACAGCACCAGC ACGGCCAAGTCCTGCCCTATGATCATGGTGTTCCACGCTGGACACTGCGA GCGAATTTTGTGGCGCGGATGGGTGGCGTCCACTGTGACGGAGTTCGTGC TCTCCGCCCTGGCCATCTTCCTGGTGTCCTTCCTGTATGAGGCGCTCAAG TTCCTGCGACAGCAACTGGCGCGCAGGGAAGCCCGTCGAGCAAGCGAGCA GCTGGCGGCGGAGCAGCGTAGGAAGAACGAGGCTCCGGCAGCCGGAGGAT GCTGCTCGGAAGCTCCCCTGGCGGAGCCGAGGGAGCAGACCTACTGGCAG CGCTTGTTCGCCTCGTCGCACATCGTCCAGTCCCTGCTGAACCTGCTGCA GATCGTCATCTCGTACCTGCTGATGCTGATCTTCATGACCTTCAACTACT GGCTGTGCCTGGCAGTGATCCTGGGACTGGGTCTGGGCTACTTCTTCTTC GGCTGGAACAAGAAGAATCCCGACGAGAGCGAGTGCTGTCCTTAGATCAA GAATATCGCTCTTAATTGTTTATATATCTTGCAATTGTTATAAACTAAGC CCTTATCAGTTCTTGGTTCACACATCAAAGAAAAAGTCCCGTCCCCACGT AATTATACAAATTGTTTAAAAATACAATTTTATTCGATAGTTACACTTGG TTTAATTGTTATTGATGTAATCGTAGCATAAATTAGTCAACTAGTTTACT TAATGAGCATATTGTACAAATAGTGTAGTCATGAGAACAAGAACCTATAC AACGCGTATTCATCTAAAGCGATTAAAGTACTACTCAATACTTTTGACAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 10164..10299 | 739..877 | 138 | 59.6 | Plus |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2604..2729 | 720..839 | 112 | 57.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4143635..4143813 | 1..180 | 98 | -> | Plus |
chr3R | 4144455..4145222 | 181..948 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ctr1B-RA | 1..525 | 121..645 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ctr1B-RA | 1..525 | 121..645 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ctr1B-RA | 1..525 | 121..645 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ctr1B-RA | 1..525 | 121..645 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ctr1B-RA | 1..525 | 121..645 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ctr1B-RA | 3..947 | 4..948 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ctr1B-RA | 4..950 | 1..948 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ctr1B-RA | 7..953 | 1..948 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ctr1B-RA | 3..947 | 4..948 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ctr1B-RA | 7..953 | 1..948 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8317618..8317796 | 1..180 | 98 | -> | Plus |
3R | 8318438..8319205 | 181..948 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8317618..8317796 | 1..180 | 98 | -> | Plus |
3R | 8318438..8319205 | 181..948 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8317618..8317796 | 1..180 | 98 | -> | Plus |
3R | 8318438..8319205 | 181..948 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4143340..4143518 | 1..180 | 98 | -> | Plus |
arm_3R | 4144160..4144927 | 181..948 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8059269..8060036 | 181..948 | 100 | Plus | |
3R | 8058449..8058627 | 1..180 | 98 | -> | Plus |
Translation from 120 to 644
> RE11491.hyp MDHGSDDSTSTAKSCPMIMVFHAGHCERILWRGWVASTVTEFVLSALAIF LVSFLYEALKFLRQQLARREARRASEQLAAEQRRKNEAPAAGGCCSEAPL AEPREQTYWQRLFASSHIVQSLLNLLQIVISYLLMLIFMTFNYWLCLAVI LGLGLGYFFFGWNKKNPDESECCP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ctr1B-PA | 174 | CG7459-PA | 1..174 | 1..174 | 920 | 100 | Plus |
Ctr1A-PB | 231 | CG3977-PB | 66..220 | 2..164 | 276 | 37.4 | Plus |
Ctr1A-PA | 231 | CG3977-PA | 66..220 | 2..164 | 276 | 37.4 | Plus |
Ctr1A-PD | 241 | CG3977-PD | 66..230 | 2..164 | 274 | 36.5 | Plus |
Ctr1A-PC | 241 | CG3977-PC | 66..230 | 2..164 | 274 | 36.5 | Plus |
Translation from 120 to 644
> RE11491.pep MDHGSDDSTSTAKSCPMIMVFHAGHCERILWRGWVASTVTEFVLSALAIF LVSFLYEALKFLRQQLARREARRASEQLAAEQRRKNEAPAAGGCCSEAPL AEPREQTYWQRLFASSHIVQSLLNLLQIVISYLLMLIFMTFNYWLCLAVI LGLGLGYFFFGWNKKNPDESECCP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18342-PA | 183 | GF18342-PA | 11..183 | 2..174 | 812 | 84.4 | Plus |
Dana\GF23301-PA | 256 | GF23301-PA | 87..244 | 17..160 | 258 | 38.6 | Plus |
Dana\GF22272-PA | 233 | GF22272-PA | 81..232 | 17..173 | 255 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25028-PA | 178 | GG25028-PA | 6..178 | 2..174 | 898 | 96 | Plus |
Dere\GG19602-PA | 241 | GG19602-PA | 79..240 | 17..173 | 246 | 36.3 | Plus |
Dere\GG11899-PA | 270 | GG11899-PA | 63..267 | 17..169 | 218 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14206-PA | 171 | GH14206-PA | 1..171 | 1..174 | 643 | 68.4 | Plus |
Dgri\GH24714-PA | 228 | GH24714-PA | 75..227 | 17..173 | 247 | 38 | Plus |
Dgri\GH14352-PA | 241 | GH14352-PA | 64..235 | 19..166 | 219 | 33.7 | Plus |
Dgri\GH23297-PA | 241 | GH23297-PA | 64..235 | 19..166 | 218 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ctr1B-PA | 174 | CG7459-PA | 1..174 | 1..174 | 920 | 100 | Plus |
Ctr1A-PB | 231 | CG3977-PB | 66..220 | 2..164 | 276 | 37.4 | Plus |
Ctr1A-PA | 231 | CG3977-PA | 66..220 | 2..164 | 276 | 37.4 | Plus |
Ctr1A-PD | 241 | CG3977-PD | 66..230 | 2..164 | 274 | 36.5 | Plus |
Ctr1A-PC | 241 | CG3977-PC | 66..230 | 2..164 | 274 | 36.5 | Plus |
Ctr1C-PA | 270 | CG15551-PA | 58..267 | 12..169 | 233 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24869-PA | 177 | GI24869-PA | 6..177 | 1..174 | 607 | 63.1 | Plus |
Dmoj\GI21812-PA | 234 | GI21812-PA | 72..233 | 17..173 | 246 | 36.3 | Plus |
Dmoj\GI10446-PA | 232 | GI10446-PA | 59..226 | 19..166 | 228 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23430-PA | 176 | GL23430-PA | 6..176 | 2..174 | 696 | 82.1 | Plus |
Dper\GL13345-PA | 220 | GL13345-PA | 68..219 | 17..173 | 253 | 36.5 | Plus |
Dper\GL13975-PA | 383 | GL13975-PA | 328..371 | 117..160 | 177 | 65.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20368-PA | 176 | GA20368-PA | 6..176 | 2..174 | 697 | 82.1 | Plus |
Dpse\GA17816-PA | 220 | GA17816-PA | 68..219 | 17..173 | 253 | 36.5 | Plus |
Dpse\GA13809-PA | 376 | GA13809-PA | 321..364 | 117..160 | 178 | 65.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23723-PA | 178 | GM23723-PA | 6..178 | 2..174 | 904 | 97.7 | Plus |
Dsec\GM12117-PA | 240 | GM12117-PA | 63..237 | 17..169 | 256 | 37.1 | Plus |
Dsec\GM12509-PA | 241 | GM12509-PA | 79..240 | 17..173 | 242 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15144-PA | 178 | GD15144-PA | 6..178 | 2..174 | 907 | 98.3 | Plus |
Dsim\GD16719-PA | 240 | GD16719-PA | 58..228 | 12..160 | 250 | 36.3 | Plus |
Dsim\GD16812-PA | 241 | GD16812-PA | 79..240 | 17..173 | 242 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24513-PA | 180 | GJ24513-PA | 10..180 | 2..174 | 683 | 72.3 | Plus |
Dvir\GJ16985-PA | 231 | GJ16985-PA | 78..230 | 17..173 | 275 | 39.2 | Plus |
Dvir\GJ10663-PA | 235 | GJ10663-PA | 64..229 | 19..166 | 239 | 35.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13179-PA | 173 | GK13179-PA | 1..173 | 1..174 | 652 | 69 | Plus |
Dwil\GK25589-PA | 229 | GK25589-PA | 77..228 | 17..173 | 250 | 36.5 | Plus |
Dwil\GK13100-PA | 274 | GK13100-PA | 57..272 | 6..169 | 235 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25868-PA | 178 | GE25868-PA | 6..178 | 2..174 | 901 | 96.5 | Plus |
Dyak\GE16762-PA | 238 | GE16762-PA | 76..237 | 17..173 | 243 | 36.3 | Plus |
Dyak\GE23348-PA | 274 | GE23348-PA | 63..271 | 17..169 | 217 | 31.1 | Plus |