Clone RE11562 Report

Search the DGRC for RE11562

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:115
Well:62
Vector:pFlc-1
Associated Gene/TranscriptCG17337-RA
Protein status:RE11562.pep: gold
Preliminary Size:2154
Sequenced Size:1703

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17337 2002-01-01 Sim4 clustering to Release 2
CG17337 2002-05-30 Blastp of sequenced clone
CG17337 2003-01-01 Sim4 clustering to Release 3
CG17337 2008-04-29 Release 5.5 accounting
CG17337 2008-08-15 Release 5.9 accounting
CG17337 2008-12-18 5.12 accounting

Clone Sequence Records

RE11562.complete Sequence

1703 bp (1703 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118368

> RE11562.complete
AGCGCCATTACTTGAGTTTTATAAATATAAGCGCGCGCCGACAGCAGGTT
AGATTTAAATAGCTAGAGACCGGAGACGATTACAGCTGTTACAGTATTCC
ATAGAAAAAAAAGCGCGATGCCCGAGTTATCAAGTGAACTTCAAAAATTC
TTTGCCTTTGTGGACGGCAAAAAAGAAGATTACATCGGGGCCCTAAAAAC
CGTTGTGGGTATTCAGTCCGTATCAGCCTGGCCCGAAAAGCGAGGCGAGA
TCGGTCGTATGGTGGAATGGACCGCGGATCGGCTGAGGTCTCTGGGCGCC
GAGACAGAGCTGGCAGATGTGGGTCAGCAGACTTTGCCGAACGGCCAGAT
TATACCTCTACCAAAGGTTCTGCTGGGAACTTTGGGCAAAGACCCCTCTA
AGAAGACCGTGTTGGTCTATGGTCATTTGGATGTGCAGCCCGCCCTGAAG
GAAGATGGATGGAACACCAATCCCTTTGAGCTTACAGAGGTGGATGGAAA
ACTGTTTGGACGCGGGGCATCCGACGACAAGGGACCTGTTCTGTGCTGGA
TCCACGCTATCGAAGCTTATCAGAAGCTCAACATTGCACTGCCTGTGAAT
GTTAAATTCGTATTTGAGGGAATGGAGGAAAGCGGCAGCGAAGGCCTCGA
TGACTTGTTATTGGAACGTAAAGATAATTTCTTAGCGGATGTTGATTTTG
TTTGCATATCCGATAACTACTGGCTTGGAAAAAAACGCCCTTGCCTCACA
TATGGGCTTCGCGGTTTGGCATACTTTCAAGTGGAGGTGGAATGCTCCAG
CAAAGACTTGCATAGTGGAGTTTTTGGGGGTACAGTTCACGAAGCAATGC
CGGATCTGTGTCATTTGCTGAGCATTCTTGTCGATAAAGATACAAATATC
CTAGTCCCTGGTGTGGATCGCGACGTCGCACCACAGATTAAGAACGAGCA
ATCTATATATGAGAACATAGACTTTGAAGTTTCTGAGTACAAGAAAGACA
TTGGTGTTGAACAGCTGCCGCATAATGGCGATAAAACAAGGTTACTTCAA
GCCAGGTGGCGCTATCCCAGTCTTTCTGTTCACGGAATTGAAGGTGCATT
TTATGAGCCAGGCGCAAAAACTGTCATTCCGAAGAAGGTTATTGGTAAGT
TCTCTATTCGCCTTGTCCCCAACCAAGATCCAAAGCATATTGAGGAGTGT
GTTGTAAAATACCTTAATGATAAATGGGCCGAGCGAGGATCTCCTAACAA
AATGAAGGTTACAATGCTCTCAGCTGGCAAGCCCTGGACTGAGGACCCTA
ACCATCCTCATTATGAGGCTGCAAAAAGAGCCATAAAGCATGTTTTCAAT
GTGGAACCAGATATGACCCGCGAAGGGGGATCTATTCCAGTAACGTTAAC
ATTGCAGGAAGCCACTGGTAAAAACGTTATCCTTGTGCCAGTGGGTGCAT
GTGACGACGGTGCCCATTCTCAAAATGAGAAAATCGATATTTACAATTAC
ATCGAAGGCACTAAACTTCTTGGCGCCTATCTGCACGAAGTGGGAAAATT
ATAAAATCGGAAGGCGTTGAAACGATAAACATCACAATGGTGCACATATA
AATATATCTATATATCCATTATATTTTGAGAGACTCCTGTACATTGTTTA
GTAAACATTTGTTGATGATATACATATTCAAATTTTTAAAAAAAAAAAAA
AAA

RE11562.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-RA 1821 CG17337-RA 47..1735 3..1691 8445 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1585830..1586600 156..926 3855 100 Plus
chr2R 21145070 chr2R 1586789..1587056 993..1260 1325 99.6 Plus
chr2R 21145070 chr2R 1587108..1587361 1256..1509 1270 100 Plus
chr2R 21145070 chr2R 1587416..1587593 1510..1687 890 100 Plus
chr2R 21145070 chr2R 1585230..1585382 3..155 765 100 Plus
chr2R 21145070 chr2R 1586660..1586732 925..997 350 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:33:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5698456..5699226 156..926 3855 100 Plus
2R 25286936 2R 5699415..5699682 993..1260 1340 100 Plus
2R 25286936 2R 5699735..5699988 1256..1509 1270 100 Plus
2R 25286936 2R 5700043..5700224 1510..1691 910 100 Plus
2R 25286936 2R 5697856..5698008 3..155 765 100 Plus
2R 25286936 2R 5699286..5699358 925..997 350 98.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5699655..5700425 156..926 3855 100 Plus
2R 25260384 2R 5700614..5700881 993..1260 1340 100 Plus
2R 25260384 2R 5700934..5701187 1256..1509 1270 100 Plus
2R 25260384 2R 5701242..5701423 1510..1691 910 100 Plus
2R 25260384 2R 5699055..5699207 3..155 765 100 Plus
2R 25260384 2R 5700485..5700557 925..997 350 98.6 Plus
Blast to na_te.dros performed on 2019-03-15 14:02:48 has no hits.

RE11562.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:03:40 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1585228..1585382 1..155 99 -> Plus
chr2R 1585830..1586598 156..924 100 -> Plus
chr2R 1586660..1586727 925..992 100 -> Plus
chr2R 1586789..1587053 993..1257 99 -> Plus
chr2R 1587110..1587361 1258..1509 100 -> Plus
chr2R 1587416..1587593 1510..1687 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:54:09 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 1..1437 118..1554 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:10 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 1..1437 118..1554 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:16:11 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 1..1437 118..1554 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:27:44 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 1..1437 118..1554 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:48:13 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 1..1437 118..1554 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:08:04 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 1..1687 1..1687 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:10 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 1..1687 1..1687 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:16:11 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 1..1661 19..1679 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:27:44 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 1..1687 1..1687 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:48:13 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 1..1661 19..1679 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:03:40 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5699737..5699988 1258..1509 100 -> Plus
2R 5699415..5699679 993..1257 100 -> Plus
2R 5697854..5698008 1..155 99 -> Plus
2R 5698456..5699224 156..924 100 -> Plus
2R 5699286..5699353 925..992 100 -> Plus
2R 5700043..5700220 1510..1687 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:03:40 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5699737..5699988 1258..1509 100 -> Plus
2R 5699415..5699679 993..1257 100 -> Plus
2R 5697854..5698008 1..155 99 -> Plus
2R 5698456..5699224 156..924 100 -> Plus
2R 5699286..5699353 925..992 100 -> Plus
2R 5700043..5700220 1510..1687 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:03:40 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5699737..5699988 1258..1509 100 -> Plus
2R 5699415..5699679 993..1257 100 -> Plus
2R 5697854..5698008 1..155 99 -> Plus
2R 5698456..5699224 156..924 100 -> Plus
2R 5699286..5699353 925..992 100 -> Plus
2R 5700043..5700220 1510..1687 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:16:11 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1585359..1585513 1..155 99 -> Plus
arm_2R 1585961..1586729 156..924 100 -> Plus
arm_2R 1586791..1586858 925..992 100 -> Plus
arm_2R 1586920..1587184 993..1257 100 -> Plus
arm_2R 1587242..1587493 1258..1509 100 -> Plus
arm_2R 1587548..1587725 1510..1687 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:00:16 Download gff for RE11562.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5699655..5700423 156..924 100 -> Plus
2R 5700485..5700552 925..992 100 -> Plus
2R 5700614..5700878 993..1257 100 -> Plus
2R 5700936..5701187 1258..1509 100 -> Plus
2R 5701242..5701419 1510..1687 100   Plus
2R 5699053..5699207 1..155 99 -> Plus

RE11562.pep Sequence

Translation from 117 to 1553

> RE11562.pep
MPELSSELQKFFAFVDGKKEDYIGALKTVVGIQSVSAWPEKRGEIGRMVE
WTADRLRSLGAETELADVGQQTLPNGQIIPLPKVLLGTLGKDPSKKTVLV
YGHLDVQPALKEDGWNTNPFELTEVDGKLFGRGASDDKGPVLCWIHAIEA
YQKLNIALPVNVKFVFEGMEESGSEGLDDLLLERKDNFLADVDFVCISDN
YWLGKKRPCLTYGLRGLAYFQVEVECSSKDLHSGVFGGTVHEAMPDLCHL
LSILVDKDTNILVPGVDRDVAPQIKNEQSIYENIDFEVSEYKKDIGVEQL
PHNGDKTRLLQARWRYPSLSVHGIEGAFYEPGAKTVIPKKVIGKFSIRLV
PNQDPKHIEECVVKYLNDKWAERGSPNKMKVTMLSAGKPWTEDPNHPHYE
AAKRAIKHVFNVEPDMTREGGSIPVTLTLQEATGKNVILVPVGACDDGAH
SQNEKIDIYNYIEGTKLLGAYLHEVGKL*

RE11562.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13844-PA 478 GF13844-PA 1..478 1..478 2342 89.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23176-PA 478 GG23176-PA 1..478 1..478 2460 96.4 Plus
Dere\GG23177-PA 478 GG23177-PA 1..478 1..478 2460 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20431-PA 478 GH20431-PA 1..478 1..478 2260 86.4 Plus
Dgri\GH11455-PA 628 GH11455-PA 83..542 15..476 718 36.3 Plus
Dgri\GH11456-PA 594 GH11456-PA 51..514 13..476 522 27.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-PA 478 CG17337-PA 1..478 1..478 2532 100 Plus
CG17337-PC 431 CG17337-PC 1..431 48..478 2292 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19613-PA 478 GI19613-PA 1..478 1..478 2243 85.4 Plus
Dmoj\GI21918-PA 637 GI21918-PA 89..550 15..478 732 35.8 Plus
Dmoj\GI21920-PA 593 GI21920-PA 67..516 29..476 448 27.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11063-PA 478 GL11063-PA 1..478 1..478 2366 91 Plus
Dper\GL15638-PA 211 GL15638-PA 5..211 272..478 1058 93.2 Plus
Dper\GL25906-PA 511 GL25906-PA 28..495 5..477 930 40.2 Plus
Dper\GL15469-PA 688 GL15469-PA 142..605 13..478 653 32.6 Plus
Dper\GL15776-PA 100 GL15776-PA 1..100 379..478 528 99 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14468-PA 478 GA14468-PA 1..478 1..478 2367 91 Plus
Dpse\GA25180-PA 511 GA25180-PA 28..495 5..477 929 40.2 Plus
Dpse\GA24595-PA 189 GA24595-PA 1..185 169..358 828 81.1 Plus
Dpse\GA23831-PA 692 GA23831-PA 146..609 13..478 656 32.6 Plus
Dpse\GA25182-PA 586 GA25182-PA 54..510 18..476 477 25.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16517-PA 478 GM16517-PA 1..478 1..478 2515 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10382-PA 1053 GD10382-PA 1..456 1..456 2387 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14978-PA 478 GJ14978-PA 1..478 1..478 2274 87 Plus
Dvir\GJ17823-PA 638 GJ17823-PA 103..553 26..478 698 35.7 Plus
Dvir\GJ17824-PA 596 GJ17824-PA 44..518 6..476 479 26.3 Plus
Dvir\GJ19835-PA 355 GJ19835-PA 154..346 285..477 366 35.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10616-PA 480 GK10616-PA 6..480 4..478 2254 86.5 Plus
Dwil\GK15097-PA 590 GK15097-PA 56..505 20..478 619 31.6 Plus
Dwil\GK15098-PA 594 GK15098-PA 57..515 18..476 487 25.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20538-PA 478 GE20538-PA 1..478 1..478 2477 97.1 Plus

RE11562.hyp Sequence

Translation from 117 to 1553

> RE11562.hyp
MPELSSELQKFFAFVDGKKEDYIGALKTVVGIQSVSAWPEKRGEIGRMVE
WTADRLRSLGAETELADVGQQTLPNGQIIPLPKVLLGTLGKDPSKKTVLV
YGHLDVQPALKEDGWNTNPFELTEVDGKLFGRGASDDKGPVLCWIHAIEA
YQKLNIALPVNVKFVFEGMEESGSEGLDDLLLERKDNFLADVDFVCISDN
YWLGKKRPCLTYGLRGLAYFQVEVECSSKDLHSGVFGGTVHEAMPDLCHL
LSILVDKDTNILVPGVDRDVAPQIKNEQSIYENIDFEVSEYKKDIGVEQL
PHNGDKTRLLQARWRYPSLSVHGIEGAFYEPGAKTVIPKKVIGKFSIRLV
PNQDPKHIEECVVKYLNDKWAERGSPNKMKVTMLSAGKPWTEDPNHPHYE
AAKRAIKHVFNVEPDMTREGGSIPVTLTLQEATGKNVILVPVGACDDGAH
SQNEKIDIYNYIEGTKLLGAYLHEVGKL*

RE11562.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-PA 478 CG17337-PA 1..478 1..478 2532 100 Plus
CG17337-PC 431 CG17337-PC 1..431 48..478 2292 100 Plus