BDGP Sequence Production Resources |
Search the DGRC for RE11615
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 116 |
Well: | 15 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG2126-RA |
Protein status: | RE11615.pep: gold |
Preliminary Size: | 978 |
Sequenced Size: | 1288 |
Gene | Date | Evidence |
---|---|---|
CG2126 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2126 | 2002-02-22 | Blastp of sequenced clone |
CG2126 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2126 | 2008-04-29 | Release 5.5 accounting |
CG2126 | 2008-08-15 | Release 5.9 accounting |
CG2126 | 2008-12-18 | 5.12 accounting |
1288 bp (1288 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089582
> RE11615.complete GTTGTTTTTATTTTGTTTAATGTAATATACAATACGAAGTAATTGTTTTG ATTTCATGAGAATGTACGACGCGTTGGAACGCTGCCCAGGAGCCTACTGT GGGCGATCACCGCTAGGAAACAACAGCTGGAGCAGCTGCGGGGTCTGTCC CAGAGGATCTCGGGTGAACCAAAGTTACGCATGCTCTCCATGCCGCGACG AGTTAAGCACGTACTCCTGGCTATACCTGGGATTCATGACCATGCTGCCA CTTATGATGCACTGCTTTTTCATTGACATGGACGCCAAGGATCGCAAGTT TTCGCGGAAGCAGCTGATCTTGACGGCCAGCGCTTTCGTTGAGGTTGCCA TATCTGCCATCCTCGCCACCTTGCTAATGGAGCCCATGTGGGAGCTGCGC CTCTACGCCTGTGATGTTCGAAAACTTACTGACTGGTACACATTGTTTTA CAACCCCAGCCCCAATTATGAGGCACGAGTCTACTGCACCCAGGAGGCAG TTTACCCATTGCAAACCATCGTGCTGGTTTTCTACTTTCTGTGCCTGGTG AACATGTTTCTCATACGCCCGCTAGTCAGCAAAATTATGGATGTGGGGGG CAGAAGCAAGGCGCCGATTTACTCGGCTCTTTACTTCCTGCCCCTGCTCA CCTTTATCCATGCGTTAGGATGTGGGTTGATCTATTACTCCTTTCCGTAC CTTAGCGTGGCCATATCCATGGTAGCCAATGCCATCCACTATTCCCTCAA ACTGGATCAAACCCTAAAGGCATTGGTTCACTCGTCGGTGTGGGAGTTAA AAAACGTGGTCATCATAGCTGTGCACTGGATGTTGTTGGCCTACGGCCTC ACCTCCCTGAATTACCACTATGCCTTTATGTGCTTGGTGCCCTTCCCCAC ACTGTTCTATATTTTGACCGTACGTTTCACGGATCCTGCCGAGTTCCGGG AGCTGGAGTCGAGAATTTGATGCGGCGACGTCCAGATGCAAATTTTTCAC GCCCGGGGAACTCGTCGATCGACTGTTGTTATCTATGTGTAGTGTACGCG TCAATTAATTTATTTACATTTAGTATGTAGCTCAGACTCAGACCTGTTCC GAGTATAATTGCGGCTCTAAAAGCCGTTGAGAAACAAATTTAGGAGCAGG TCTATTTAGTGTTTTCGTCGCACAAGCTTAATTCATTCTTCGTTCTTTTC GTTTTAATTATATTTCACATTAATTATACACATATAGTAATATTAAATAC AAATCATCAGTTTCCCATCTCTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2126-RA | 1378 | CG2126-RA | 81..1355 | 2..1276 | 6375 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 27597406..27597862 | 1272..817 | 2235 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 27598341..27598554 | 511..298 | 1055 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 27598106..27598278 | 683..511 | 850 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 27598801..27598964 | 165..2 | 820 | 100 | Minus |
chr3R | 27901430 | chr3R | 27598605..27598741 | 299..163 | 685 | 100 | Minus |
chr3R | 27901430 | chr3R | 27597917..27598051 | 818..684 | 675 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 31775045..31775504 | 1276..817 | 2300 | 100 | Minus |
3R | 32079331 | 3R | 31775983..31776196 | 511..298 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 31775748..31775920 | 683..511 | 865 | 100 | Minus |
3R | 32079331 | 3R | 31776443..31776606 | 165..2 | 820 | 100 | Minus |
3R | 32079331 | 3R | 31776247..31776383 | 299..163 | 685 | 100 | Minus |
3R | 32079331 | 3R | 31775559..31775693 | 818..684 | 675 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 31515876..31516335 | 1276..817 | 2300 | 100 | Minus |
3R | 31820162 | 3R | 31516814..31517027 | 511..298 | 1070 | 100 | Minus |
3R | 31820162 | 3R | 31516579..31516751 | 683..511 | 865 | 100 | Minus |
3R | 31820162 | 3R | 31517274..31517437 | 165..2 | 820 | 100 | Minus |
3R | 31820162 | 3R | 31517078..31517214 | 299..163 | 685 | 100 | Minus |
3R | 31820162 | 3R | 31516390..31516524 | 818..684 | 675 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Doc2-element | 4789 | Doc2-element DOC2 4789bp | 4669..4718 | 53..3 | 117 | 72.5 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 27597406..27597860 | 819..1272 | 99 | <- | Minus |
chr3R | 27597917..27598051 | 684..818 | 100 | <- | Minus |
chr3R | 27598106..27598278 | 511..683 | 99 | <- | Minus |
chr3R | 27598342..27598554 | 298..510 | 99 | <- | Minus |
chr3R | 27598607..27598740 | 164..297 | 100 | <- | Minus |
chr3R | 27598803..27598964 | 1..163 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2126-RA | 1..915 | 56..970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2126-RA | 1..915 | 56..970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2126-RB | 1..987 | 56..1042 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2126-RA | 1..915 | 56..970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2126-RB | 1..987 | 56..1042 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2126-RA | 1..1271 | 2..1272 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2126-RA | 9..1280 | 1..1272 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2126-RA | 46..1317 | 1..1272 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2126-RA | 1..1271 | 2..1272 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2126-RA | 46..1317 | 1..1272 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31775049..31775502 | 819..1272 | 100 | <- | Minus |
3R | 31775559..31775693 | 684..818 | 100 | <- | Minus |
3R | 31775748..31775920 | 511..683 | 100 | <- | Minus |
3R | 31775984..31776196 | 298..510 | 100 | <- | Minus |
3R | 31776249..31776382 | 164..297 | 100 | <- | Minus |
3R | 31776445..31776606 | 1..163 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31775049..31775502 | 819..1272 | 100 | <- | Minus |
3R | 31775559..31775693 | 684..818 | 100 | <- | Minus |
3R | 31775748..31775920 | 511..683 | 100 | <- | Minus |
3R | 31775984..31776196 | 298..510 | 100 | <- | Minus |
3R | 31776249..31776382 | 164..297 | 100 | <- | Minus |
3R | 31776445..31776606 | 1..163 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31775049..31775502 | 819..1272 | 100 | <- | Minus |
3R | 31775559..31775693 | 684..818 | 100 | <- | Minus |
3R | 31775748..31775920 | 511..683 | 100 | <- | Minus |
3R | 31775984..31776196 | 298..510 | 100 | <- | Minus |
3R | 31776249..31776382 | 164..297 | 100 | <- | Minus |
3R | 31776445..31776606 | 1..163 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 27600771..27601224 | 819..1272 | 100 | <- | Minus |
arm_3R | 27601281..27601415 | 684..818 | 100 | <- | Minus |
arm_3R | 27601470..27601642 | 511..683 | 100 | <- | Minus |
arm_3R | 27601706..27601918 | 298..510 | 100 | <- | Minus |
arm_3R | 27601971..27602104 | 164..297 | 100 | <- | Minus |
arm_3R | 27602167..27602328 | 1..163 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31515880..31516333 | 819..1272 | 100 | <- | Minus |
3R | 31516390..31516524 | 684..818 | 100 | <- | Minus |
3R | 31516579..31516751 | 511..683 | 100 | <- | Minus |
3R | 31516815..31517027 | 298..510 | 100 | <- | Minus |
3R | 31517080..31517213 | 164..297 | 100 | <- | Minus |
3R | 31517276..31517437 | 1..163 | 99 | Minus |
Translation from 55 to 969
> RE11615.hyp MRMYDALERCPGAYCGRSPLGNNSWSSCGVCPRGSRVNQSYACSPCRDEL STYSWLYLGFMTMLPLMMHCFFIDMDAKDRKFSRKQLILTASAFVEVAIS AILATLLMEPMWELRLYACDVRKLTDWYTLFYNPSPNYEARVYCTQEAVY PLQTIVLVFYFLCLVNMFLIRPLVSKIMDVGGRSKAPIYSALYFLPLLTF IHALGCGLIYYSFPYLSVAISMVANAIHYSLKLDQTLKALVHSSVWELKN VVIIAVHWMLLAYGLTSLNYHYAFMCLVPFPTLFYILTVRFTDPAEFREL ESRI*
Translation from 55 to 969
> RE11615.pep MRMYDALERCPGAYCGRSPLGNNSWSSCGVCPRGSRVNQSYACSPCRDEL STYSWLYLGFMTMLPLMMHCFFIDMDAKDRKFSRKQLILTASAFVEVAIS AILATLLMEPMWELRLYACDVRKLTDWYTLFYNPSPNYEARVYCTQEAVY PLQTIVLVFYFLCLVNMFLIRPLVSKIMDVGGRSKAPIYSALYFLPLLTF IHALGCGLIYYSFPYLSVAISMVANAIHYSLKLDQTLKALVHSSVWELKN VVIIAVHWMLLAYGLTSLNYHYAFMCLVPFPTLFYILTVRFTDPAEFREL ESRI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23247-PA | 301 | GF23247-PA | 1..299 | 3..301 | 1483 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11850-PA | 304 | GG11850-PA | 1..304 | 1..304 | 1607 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14120-PA | 300 | GH14120-PA | 1..300 | 3..304 | 1353 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2126-PB | 328 | CG2126-PB | 1..304 | 1..304 | 1619 | 100 | Plus |
CG2126-PA | 304 | CG2126-PA | 1..304 | 1..304 | 1619 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10648-PA | 300 | GI10648-PA | 1..300 | 3..304 | 1299 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24189-PA | 303 | GL24189-PA | 1..303 | 3..304 | 1477 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15258-PA | 303 | GA15258-PA | 1..303 | 3..304 | 1466 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16414-PA | 302 | GM16414-PA | 1..302 | 3..304 | 1606 | 100 | Plus |
Dsec\GM19642-PA | 70 | GM19642-PA | 1..70 | 235..304 | 367 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16272-PA | 302 | GD16272-PA | 1..302 | 3..304 | 1606 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23006-PA | 300 | GJ23006-PA | 1..300 | 3..304 | 1353 | 82.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14106-PA | 303 | GK14106-PA | 7..303 | 8..304 | 1410 | 86.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23297-PA | 304 | GE23297-PA | 1..304 | 1..304 | 1610 | 99 | Plus |