Clone RE11615 Report

Search the DGRC for RE11615

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:116
Well:15
Vector:pFlc-1
Associated Gene/TranscriptCG2126-RA
Protein status:RE11615.pep: gold
Preliminary Size:978
Sequenced Size:1288

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2126 2002-01-01 Sim4 clustering to Release 2
CG2126 2002-02-22 Blastp of sequenced clone
CG2126 2003-01-01 Sim4 clustering to Release 3
CG2126 2008-04-29 Release 5.5 accounting
CG2126 2008-08-15 Release 5.9 accounting
CG2126 2008-12-18 5.12 accounting

Clone Sequence Records

RE11615.complete Sequence

1288 bp (1288 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089582

> RE11615.complete
GTTGTTTTTATTTTGTTTAATGTAATATACAATACGAAGTAATTGTTTTG
ATTTCATGAGAATGTACGACGCGTTGGAACGCTGCCCAGGAGCCTACTGT
GGGCGATCACCGCTAGGAAACAACAGCTGGAGCAGCTGCGGGGTCTGTCC
CAGAGGATCTCGGGTGAACCAAAGTTACGCATGCTCTCCATGCCGCGACG
AGTTAAGCACGTACTCCTGGCTATACCTGGGATTCATGACCATGCTGCCA
CTTATGATGCACTGCTTTTTCATTGACATGGACGCCAAGGATCGCAAGTT
TTCGCGGAAGCAGCTGATCTTGACGGCCAGCGCTTTCGTTGAGGTTGCCA
TATCTGCCATCCTCGCCACCTTGCTAATGGAGCCCATGTGGGAGCTGCGC
CTCTACGCCTGTGATGTTCGAAAACTTACTGACTGGTACACATTGTTTTA
CAACCCCAGCCCCAATTATGAGGCACGAGTCTACTGCACCCAGGAGGCAG
TTTACCCATTGCAAACCATCGTGCTGGTTTTCTACTTTCTGTGCCTGGTG
AACATGTTTCTCATACGCCCGCTAGTCAGCAAAATTATGGATGTGGGGGG
CAGAAGCAAGGCGCCGATTTACTCGGCTCTTTACTTCCTGCCCCTGCTCA
CCTTTATCCATGCGTTAGGATGTGGGTTGATCTATTACTCCTTTCCGTAC
CTTAGCGTGGCCATATCCATGGTAGCCAATGCCATCCACTATTCCCTCAA
ACTGGATCAAACCCTAAAGGCATTGGTTCACTCGTCGGTGTGGGAGTTAA
AAAACGTGGTCATCATAGCTGTGCACTGGATGTTGTTGGCCTACGGCCTC
ACCTCCCTGAATTACCACTATGCCTTTATGTGCTTGGTGCCCTTCCCCAC
ACTGTTCTATATTTTGACCGTACGTTTCACGGATCCTGCCGAGTTCCGGG
AGCTGGAGTCGAGAATTTGATGCGGCGACGTCCAGATGCAAATTTTTCAC
GCCCGGGGAACTCGTCGATCGACTGTTGTTATCTATGTGTAGTGTACGCG
TCAATTAATTTATTTACATTTAGTATGTAGCTCAGACTCAGACCTGTTCC
GAGTATAATTGCGGCTCTAAAAGCCGTTGAGAAACAAATTTAGGAGCAGG
TCTATTTAGTGTTTTCGTCGCACAAGCTTAATTCATTCTTCGTTCTTTTC
GTTTTAATTATATTTCACATTAATTATACACATATAGTAATATTAAATAC
AAATCATCAGTTTCCCATCTCTAAAAAAAAAAAAAAAA

RE11615.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-RA 1378 CG2126-RA 81..1355 2..1276 6375 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27597406..27597862 1272..817 2235 99.8 Minus
chr3R 27901430 chr3R 27598341..27598554 511..298 1055 99.5 Minus
chr3R 27901430 chr3R 27598106..27598278 683..511 850 99.4 Minus
chr3R 27901430 chr3R 27598801..27598964 165..2 820 100 Minus
chr3R 27901430 chr3R 27598605..27598741 299..163 685 100 Minus
chr3R 27901430 chr3R 27597917..27598051 818..684 675 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:33:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31775045..31775504 1276..817 2300 100 Minus
3R 32079331 3R 31775983..31776196 511..298 1070 100 Minus
3R 32079331 3R 31775748..31775920 683..511 865 100 Minus
3R 32079331 3R 31776443..31776606 165..2 820 100 Minus
3R 32079331 3R 31776247..31776383 299..163 685 100 Minus
3R 32079331 3R 31775559..31775693 818..684 675 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31515876..31516335 1276..817 2300 100 Minus
3R 31820162 3R 31516814..31517027 511..298 1070 100 Minus
3R 31820162 3R 31516579..31516751 683..511 865 100 Minus
3R 31820162 3R 31517274..31517437 165..2 820 100 Minus
3R 31820162 3R 31517078..31517214 299..163 685 100 Minus
3R 31820162 3R 31516390..31516524 818..684 675 100 Minus
Blast to na_te.dros performed 2019-03-16 07:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-element 4789 Doc2-element DOC2 4789bp 4669..4718 53..3 117 72.5 Minus

RE11615.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:11:12 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27597406..27597860 819..1272 99 <- Minus
chr3R 27597917..27598051 684..818 100 <- Minus
chr3R 27598106..27598278 511..683 99 <- Minus
chr3R 27598342..27598554 298..510 99 <- Minus
chr3R 27598607..27598740 164..297 100 <- Minus
chr3R 27598803..27598964 1..163 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:54:11 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 1..915 56..970 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:40:12 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 1..915 56..970 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:21:43 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RB 1..987 56..1042 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:52 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 1..915 56..970 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:28:55 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RB 1..987 56..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:05:08 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 1..1271 2..1272 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:40:12 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 9..1280 1..1272 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:43 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 46..1317 1..1272 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:52 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 1..1271 2..1272 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:28:55 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 46..1317 1..1272 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:11:12 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31775049..31775502 819..1272 100 <- Minus
3R 31775559..31775693 684..818 100 <- Minus
3R 31775748..31775920 511..683 100 <- Minus
3R 31775984..31776196 298..510 100 <- Minus
3R 31776249..31776382 164..297 100 <- Minus
3R 31776445..31776606 1..163 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:11:12 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31775049..31775502 819..1272 100 <- Minus
3R 31775559..31775693 684..818 100 <- Minus
3R 31775748..31775920 511..683 100 <- Minus
3R 31775984..31776196 298..510 100 <- Minus
3R 31776249..31776382 164..297 100 <- Minus
3R 31776445..31776606 1..163 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:11:12 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31775049..31775502 819..1272 100 <- Minus
3R 31775559..31775693 684..818 100 <- Minus
3R 31775748..31775920 511..683 100 <- Minus
3R 31775984..31776196 298..510 100 <- Minus
3R 31776249..31776382 164..297 100 <- Minus
3R 31776445..31776606 1..163 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:43 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27600771..27601224 819..1272 100 <- Minus
arm_3R 27601281..27601415 684..818 100 <- Minus
arm_3R 27601470..27601642 511..683 100 <- Minus
arm_3R 27601706..27601918 298..510 100 <- Minus
arm_3R 27601971..27602104 164..297 100 <- Minus
arm_3R 27602167..27602328 1..163 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:44:07 Download gff for RE11615.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31515880..31516333 819..1272 100 <- Minus
3R 31516390..31516524 684..818 100 <- Minus
3R 31516579..31516751 511..683 100 <- Minus
3R 31516815..31517027 298..510 100 <- Minus
3R 31517080..31517213 164..297 100 <- Minus
3R 31517276..31517437 1..163 99   Minus

RE11615.hyp Sequence

Translation from 55 to 969

> RE11615.hyp
MRMYDALERCPGAYCGRSPLGNNSWSSCGVCPRGSRVNQSYACSPCRDEL
STYSWLYLGFMTMLPLMMHCFFIDMDAKDRKFSRKQLILTASAFVEVAIS
AILATLLMEPMWELRLYACDVRKLTDWYTLFYNPSPNYEARVYCTQEAVY
PLQTIVLVFYFLCLVNMFLIRPLVSKIMDVGGRSKAPIYSALYFLPLLTF
IHALGCGLIYYSFPYLSVAISMVANAIHYSLKLDQTLKALVHSSVWELKN
VVIIAVHWMLLAYGLTSLNYHYAFMCLVPFPTLFYILTVRFTDPAEFREL
ESRI*

RE11615.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-PA 304 CG2126-PA 1..304 1..304 1619 100 Plus
CG2126-PB 328 CG2126-PB 1..304 1..304 1619 100 Plus

RE11615.pep Sequence

Translation from 55 to 969

> RE11615.pep
MRMYDALERCPGAYCGRSPLGNNSWSSCGVCPRGSRVNQSYACSPCRDEL
STYSWLYLGFMTMLPLMMHCFFIDMDAKDRKFSRKQLILTASAFVEVAIS
AILATLLMEPMWELRLYACDVRKLTDWYTLFYNPSPNYEARVYCTQEAVY
PLQTIVLVFYFLCLVNMFLIRPLVSKIMDVGGRSKAPIYSALYFLPLLTF
IHALGCGLIYYSFPYLSVAISMVANAIHYSLKLDQTLKALVHSSVWELKN
VVIIAVHWMLLAYGLTSLNYHYAFMCLVPFPTLFYILTVRFTDPAEFREL
ESRI*

RE11615.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23247-PA 301 GF23247-PA 1..299 3..301 1483 91 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11850-PA 304 GG11850-PA 1..304 1..304 1607 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14120-PA 300 GH14120-PA 1..300 3..304 1353 82.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-PB 328 CG2126-PB 1..304 1..304 1619 100 Plus
CG2126-PA 304 CG2126-PA 1..304 1..304 1619 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10648-PA 300 GI10648-PA 1..300 3..304 1299 78.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24189-PA 303 GL24189-PA 1..303 3..304 1477 91.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15258-PA 303 GA15258-PA 1..303 3..304 1466 90.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16414-PA 302 GM16414-PA 1..302 3..304 1606 100 Plus
Dsec\GM19642-PA 70 GM19642-PA 1..70 235..304 367 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16272-PA 302 GD16272-PA 1..302 3..304 1606 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23006-PA 300 GJ23006-PA 1..300 3..304 1353 82.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14106-PA 303 GK14106-PA 7..303 8..304 1410 86.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23297-PA 304 GE23297-PA 1..304 1..304 1610 99 Plus