BDGP Sequence Production Resources |
Search the DGRC for RE11685
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 116 |
Well: | 85 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Tsp42Eg-RA |
Protein status: | RE11685.pep: gold |
Preliminary Size: | 827 |
Sequenced Size: | 1202 |
Gene | Date | Evidence |
---|---|---|
CG12142 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12142 | 2002-04-22 | Blastp of sequenced clone |
CG12142 | 2003-01-01 | Sim4 clustering to Release 3 |
Tsp42Eg | 2008-04-29 | Release 5.5 accounting |
Tsp42Eg | 2008-08-15 | Release 5.9 accounting |
Tsp42Eg | 2008-12-18 | 5.12 accounting |
1202 bp (1202 high quality bases) assembled on 2002-04-22
GenBank Submission: AY113403
> RE11685.complete AGTTTTCAGTTAACAGTCGAGCGGTGAGCATGAGCCCGGTTTTGGGTAAC CCCAGCAACCGTTAGGTCCGAAATAAATATTTTCCGATTGTCAACAAGCC GCGAGTTGCCAAGTGTTATAAATAATACGCGTAACCTCCTGCAAAGAAAC AATAGATATATAGTTTCCGAAAATTGGATTGGCAAGATGGCCTGCTCCAC AAACGTTTTGAAGGGCTTTGCCCTCTTTTGGGATATTATCCTCGCTCTGT TCGGCCTGGTTGTTATCGGCCTTGGTGTGCACATCATCTACAAATTCGAG CACTTCAACACGGCCGCCTTCGTCATCATCGCGGTGGGCGTGGTCGTCGT TCTGACCGCCCTTTTCGGGGCTCTGGGAGCAGCGCGGGAGAGCAGTGCCA CATCTAAGGTGTTCGTTGTTATTCTGATTGTCTTGGTCATACTGGAAGTT CTAGCAGTTGGGTTCCTGTGGGTTTTCCAAACCTCGCTGCTGATTAACGT GGACAAAACGTTTGATAAACTGTGGAATGACCAGCCGGTGCCAATCAAGC CTGGCAACCAGAGTCAGATTGCCAGCCTCGAGCGATGGTTGGATTGCTGC GGCAATGTGGGGCCCTCGGACTACATTCTGCCCCCGAATAGTTGCTACAA CGGCGAGAGTGACAAACTGAATCTTGAAGGATGCCGGCAAAAGTTCCTGG ACTTTATCGCCGATCGTTGGACGACATTTAATCTGGTTTCCCTGGTGCTA TTGGGTGTGGAGCTGATTTGCGCCCTGTTGGCCTATGTCCTGGCCAATAG CATCGTGAACCGCTGGCGACGCTCGAAGTACTATCAGAAATAGGTTCACA TACCATTTTGAAATACATTGAAATGCATTTCGAAAATTCAAGTTTAAGCT GCGCATACTTAAGACCAAAGAACTCTCCATACAAATACTTAAGCCGAAAC TCGATAGAGATTCCAAAACAAATTTACTTAAGCCAAGCAAACCGAAAGCA GTGCGTTGTTTGTATTCTATTTATCACTTTGGATAACTGCAATGTTGAAG CGGATTCTATATTCCGCTTAGAATGTAACTTAATCTACACTAAGCTCGAC CTAAGCCACAAATTTTCTGTAACAGCATTTCGAGGAGACAAGTCAAATAA AGAATCTGGCCGAAGATCCAGAAGATCTGAAGATCTAAAAAAAAAAAAAA AA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsp42Eg-RA | 1315 | Tsp42Eg-RA | 32..1220 | 1..1189 | 5900 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 2920219..2920644 | 761..1186 | 2115 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 2916324..2916569 | 1..246 | 1215 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 2919737..2919914 | 411..588 | 875 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 2919982..2920156 | 588..762 | 875 | 100 | Plus |
chr2R | 21145070 | chr2R | 2919159..2919323 | 247..411 | 810 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7032808..7033236 | 761..1189 | 2130 | 99.8 | Plus |
2R | 25286936 | 2R | 7028913..7029158 | 1..246 | 1215 | 99.6 | Plus |
2R | 25286936 | 2R | 7032326..7032503 | 411..588 | 875 | 99.4 | Plus |
2R | 25286936 | 2R | 7032571..7032745 | 588..762 | 875 | 100 | Plus |
2R | 25286936 | 2R | 7031748..7031912 | 247..411 | 825 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7034007..7034435 | 761..1189 | 2130 | 99.7 | Plus |
2R | 25260384 | 2R | 7030112..7030357 | 1..246 | 1215 | 99.5 | Plus |
2R | 25260384 | 2R | 7033525..7033702 | 411..588 | 875 | 99.4 | Plus |
2R | 25260384 | 2R | 7033770..7033944 | 588..762 | 875 | 100 | Plus |
2R | 25260384 | 2R | 7032947..7033111 | 247..411 | 825 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 2920221..2920644 | 763..1186 | 99 | Plus | |
chr2R | 2916324..2916569 | 1..246 | 99 | -> | Plus |
chr2R | 2919159..2919323 | 247..411 | 99 | -> | Plus |
chr2R | 2919738..2919914 | 412..588 | 99 | -> | Plus |
chr2R | 2919983..2920156 | 589..762 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Eg-RA | 1..657 | 187..843 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Eg-RA | 1..657 | 187..843 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Eg-RA | 1..657 | 187..843 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Eg-RA | 1..657 | 187..843 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Eg-RA | 1..657 | 187..843 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Eg-RA | 1..1186 | 1..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Eg-RA | 1..1186 | 1..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Eg-RA | 3..1188 | 1..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Eg-RA | 1..1186 | 1..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Eg-RA | 3..1188 | 1..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7028913..7029158 | 1..246 | 99 | -> | Plus |
2R | 7031748..7031912 | 247..411 | 100 | -> | Plus |
2R | 7032327..7032503 | 412..588 | 99 | -> | Plus |
2R | 7032572..7032745 | 589..762 | 100 | -> | Plus |
2R | 7032810..7033233 | 763..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7028913..7029158 | 1..246 | 99 | -> | Plus |
2R | 7031748..7031912 | 247..411 | 100 | -> | Plus |
2R | 7032327..7032503 | 412..588 | 99 | -> | Plus |
2R | 7032572..7032745 | 589..762 | 100 | -> | Plus |
2R | 7032810..7033233 | 763..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7028913..7029158 | 1..246 | 99 | -> | Plus |
2R | 7031748..7031912 | 247..411 | 100 | -> | Plus |
2R | 7032327..7032503 | 412..588 | 99 | -> | Plus |
2R | 7032572..7032745 | 589..762 | 100 | -> | Plus |
2R | 7032810..7033233 | 763..1186 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 2920315..2920738 | 763..1186 | 99 | Plus | |
arm_2R | 2916418..2916663 | 1..246 | 99 | -> | Plus |
arm_2R | 2919253..2919417 | 247..411 | 100 | -> | Plus |
arm_2R | 2919832..2920008 | 412..588 | 99 | -> | Plus |
arm_2R | 2920077..2920250 | 589..762 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7030112..7030357 | 1..246 | 99 | -> | Plus |
2R | 7032947..7033111 | 247..411 | 100 | -> | Plus |
2R | 7033526..7033702 | 412..588 | 99 | -> | Plus |
2R | 7033771..7033944 | 589..762 | 100 | -> | Plus |
2R | 7034009..7034432 | 763..1186 | 99 | Plus |
Translation from 186 to 842
> RE11685.pep MACSTNVLKGFALFWDIILALFGLVVIGLGVHIIYKFEHFNTAAFVIIAV GVVVVLTALFGALGAARESSATSKVFVVILIVLVILEVLAVGFLWVFQTS LLINVDKTFDKLWNDQPVPIKPGNQSQIASLERWLDCCGNVGPSDYILPP NSCYNGESDKLNLEGCRQKFLDFIADRWTTFNLVSLVLLGVELICALLAY VLANSIVNRWRRSKYYQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12684-PA | 218 | GF12684-PA | 1..218 | 1..218 | 1002 | 84.9 | Plus |
Dana\GF12683-PA | 220 | GF12683-PA | 3..220 | 4..215 | 249 | 29.9 | Plus |
Dana\GF13154-PA | 226 | GF13154-PA | 1..226 | 1..215 | 219 | 26.8 | Plus |
Dana\GF12682-PA | 227 | GF12682-PA | 1..227 | 1..215 | 209 | 28 | Plus |
Dana\GF12690-PA | 208 | GF12690-PA | 1..208 | 1..215 | 187 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23245-PA | 217 | GG23245-PA | 1..217 | 1..218 | 946 | 89.9 | Plus |
Dere\GG23244-PA | 220 | GG23244-PA | 3..220 | 4..215 | 254 | 29.6 | Plus |
Dere\GG10779-PA | 227 | GG10779-PA | 1..227 | 1..215 | 190 | 25.9 | Plus |
Dere\GG23247-PA | 229 | GG23247-PA | 1..225 | 1..214 | 185 | 25 | Plus |
Dere\GG23240-PA | 226 | GG23240-PA | 1..226 | 1..215 | 179 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21501-PA | 218 | GH21501-PA | 1..218 | 1..218 | 850 | 72.9 | Plus |
Dgri\GH21500-PA | 219 | GH21500-PA | 3..219 | 4..215 | 236 | 30.2 | Plus |
Dgri\GH21494-PA | 226 | GH21494-PA | 1..226 | 1..215 | 212 | 26 | Plus |
Dgri\GH21498-PA | 227 | GH21498-PA | 1..227 | 1..215 | 203 | 25.5 | Plus |
Dgri\GH21499-PA | 230 | GH21499-PA | 1..230 | 1..215 | 199 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsp42Eg-PA | 218 | CG12142-PA | 1..218 | 1..218 | 1125 | 100 | Plus |
Tsp42Ef-PA | 220 | CG12845-PA | 3..220 | 4..215 | 240 | 27.8 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 1..226 | 1..215 | 215 | 24.7 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 1..226 | 1..215 | 215 | 24.7 | Plus |
Tsp42Ea-PA | 226 | CG18817-PA | 1..226 | 1..215 | 215 | 24.7 | Plus |
Tsp42Ee-PB | 228 | CG10106-PB | 1..228 | 1..215 | 201 | 26.7 | Plus |
Tsp42Ee-PA | 228 | CG10106-PA | 1..228 | 1..215 | 201 | 26.7 | Plus |
Tsp42Ei-PB | 229 | CG12843-PB | 1..224 | 1..213 | 200 | 23 | Plus |
Tsp42Ei-PA | 229 | CG12843-PA | 1..224 | 1..213 | 200 | 23 | Plus |
Tsp42En-PB | 218 | CG12839-PB | 1..218 | 1..215 | 199 | 29.5 | Plus |
Tsp42En-PA | 218 | CG12839-PA | 1..218 | 1..215 | 199 | 29.5 | Plus |
Tsp42Eh-PB | 231 | CG12844-PB | 1..230 | 1..216 | 198 | 25.5 | Plus |
Tsp42Ed-PB | 227 | CG12846-PB | 1..227 | 1..215 | 195 | 25.4 | Plus |
Tsp42Ed-PA | 227 | CG12846-PA | 1..227 | 1..215 | 195 | 25.4 | Plus |
lbm-PB | 208 | CG2374-PB | 1..208 | 1..215 | 184 | 29.6 | Plus |
lbm-PA | 208 | CG2374-PA | 1..208 | 1..215 | 184 | 29.6 | Plus |
CG30160-PA | 222 | CG30160-PA | 1..222 | 1..209 | 179 | 22.9 | Plus |
Tsp42Eb-PB | 222 | CG18816-PB | 1..222 | 1..209 | 179 | 22.9 | Plus |
Tsp42El-PA | 217 | CG12840-PA | 1..217 | 1..215 | 171 | 28.6 | Plus |
Tsp42Eq-PA | 219 | CG12832-PA | 1..218 | 1..215 | 156 | 22.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19471-PA | 218 | GI19471-PA | 1..218 | 1..218 | 862 | 73.4 | Plus |
Dmoj\GI19470-PA | 220 | GI19470-PA | 3..220 | 4..215 | 219 | 29.1 | Plus |
Dmoj\GI19464-PA | 226 | GI19464-PA | 1..226 | 1..215 | 216 | 25.5 | Plus |
Dmoj\GI19472-PA | 227 | GI19472-PA | 1..227 | 1..217 | 213 | 27.9 | Plus |
Dmoj\GI19473-PA | 226 | GI19473-PA | 1..222 | 1..214 | 190 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11140-PA | 218 | GL11140-PA | 1..218 | 1..218 | 907 | 88.5 | Plus |
Dper\GL11139-PA | 220 | GL11139-PA | 3..220 | 4..215 | 254 | 30.5 | Plus |
Dper\GL11133-PA | 226 | GL11133-PA | 1..226 | 1..215 | 213 | 26.4 | Plus |
Dper\GL11138-PA | 252 | GL11138-PA | 81..252 | 46..215 | 205 | 28.4 | Plus |
Dper\GL11142-PA | 228 | GL11142-PA | 1..224 | 1..214 | 202 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11434-PA | 218 | GA11434-PA | 1..218 | 1..218 | 899 | 88.1 | Plus |
Dpse\GA11850-PA | 220 | GA11850-PA | 3..220 | 4..215 | 254 | 30.5 | Plus |
Dpse\GA10076-PA | 228 | GA10076-PA | 1..228 | 1..215 | 217 | 26.3 | Plus |
Dpse\GA15095-PA | 226 | GA15095-PA | 1..226 | 1..215 | 213 | 26.4 | Plus |
Dpse\GA24622-PA | 228 | GA24622-PA | 1..224 | 1..214 | 202 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20917-PA | 218 | GM20917-PA | 1..218 | 1..218 | 1128 | 100 | Plus |
Dsec\GM20916-PA | 220 | GM20916-PA | 3..220 | 4..215 | 233 | 28.7 | Plus |
Dsec\GM20912-PA | 226 | GM20912-PA | 1..226 | 1..215 | 193 | 25.1 | Plus |
Dsec\GM20918-PA | 231 | GM20918-PA | 1..231 | 1..217 | 193 | 26.3 | Plus |
Dsec\GM20919-PA | 229 | GM20919-PA | 1..225 | 1..214 | 185 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10446-PA | 218 | GD10446-PA | 1..218 | 1..218 | 1128 | 100 | Plus |
Dsim\GD10445-PA | 225 | GD10445-PA | 3..225 | 4..215 | 225 | 29.7 | Plus |
Dsim\GD10441-PA | 226 | GD10441-PA | 1..226 | 1..215 | 192 | 25.1 | Plus |
Dsim\GD10448-PA | 229 | GD10448-PA | 1..225 | 1..214 | 190 | 25 | Plus |
Dsim\GD10280-PA | 227 | GD10280-PA | 1..227 | 1..215 | 180 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15131-PA | 218 | GJ15131-PA | 1..218 | 1..218 | 893 | 73.9 | Plus |
Dvir\GJ15134-PA | 226 | GJ15134-PA | 1..222 | 1..214 | 217 | 28.5 | Plus |
Dvir\GJ15124-PA | 226 | GJ15124-PA | 1..226 | 1..215 | 213 | 25.5 | Plus |
Dvir\GJ15130-PA | 220 | GJ15130-PA | 3..220 | 4..215 | 204 | 31.4 | Plus |
Dvir\GJ15138-PA | 208 | GJ15138-PA | 1..208 | 1..215 | 192 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21778-PA | 218 | GK21778-PA | 1..218 | 1..218 | 766 | 77.1 | Plus |
Dwil\GK21777-PA | 220 | GK21777-PA | 3..220 | 4..216 | 229 | 29 | Plus |
Dwil\GK21776-PA | 228 | GK21776-PA | 1..228 | 1..215 | 208 | 27.2 | Plus |
Dwil\GK21771-PA | 226 | GK21771-PA | 1..226 | 1..215 | 207 | 26.4 | Plus |
Dwil\GK21784-PA | 208 | GK21784-PA | 1..208 | 1..215 | 199 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19096-PA | 218 | GE19096-PA | 1..218 | 1..218 | 1109 | 96.8 | Plus |
Dyak\GE19095-PA | 220 | GE19095-PA | 3..220 | 4..215 | 234 | 29.6 | Plus |
Dyak\GE19090-PA | 226 | GE19090-PA | 1..226 | 1..215 | 198 | 25.1 | Plus |
Dyak\GE19098-PA | 229 | GE19098-PA | 1..225 | 1..214 | 192 | 25.4 | Plus |
Dyak\Tsp42Ed-PA | 227 | GE24279-PA | 1..227 | 1..215 | 182 | 25 | Plus |
Translation from 186 to 842
> RE11685.hyp MACSTNVLKGFALFWDIILALFGLVVIGLGVHIIYKFEHFNTAAFVIIAV GVVVVLTALFGALGAARESSATSKVFVVILIVLVILEVLAVGFLWVFQTS LLINVDKTFDKLWNDQPVPIKPGNQSQIASLERWLDCCGNVGPSDYILPP NSCYNGESDKLNLEGCRQKFLDFIADRWTTFNLVSLVLLGVELICALLAY VLANSIVNRWRRSKYYQK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsp42Eg-PA | 218 | CG12142-PA | 1..218 | 1..218 | 1125 | 100 | Plus |
Tsp42Ef-PA | 220 | CG12845-PA | 3..220 | 4..215 | 240 | 27.8 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 1..226 | 1..215 | 215 | 24.7 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 1..226 | 1..215 | 215 | 24.7 | Plus |
Tsp42Ea-PA | 226 | CG18817-PA | 1..226 | 1..215 | 215 | 24.7 | Plus |