Clone RE11703 Report

Search the DGRC for RE11703

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:117
Well:3
Vector:pFlc-1
Associated Gene/TranscriptCG33969-RA
Protein status:RE11703.pep: gold
Preliminary Size:1291
Sequenced Size:1676

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5571 2002-01-01 Sim4 clustering to Release 2
CG5571 2002-03-20 Blastp of sequenced clone
CG5571 2003-01-01 Sim4 clustering to Release 3
CG33969 2008-04-29 Release 5.5 accounting
CG33969 2008-08-15 Release 5.9 accounting
CG33969 2008-12-18 5.12 accounting

Clone Sequence Records

RE11703.complete Sequence

1676 bp (1676 high quality bases) assembled on 2002-03-20

GenBank Submission: AY094851

> RE11703.complete
ATTTGTTTGCGTTTTGTTCGGAAATCGTGGGAATATGAGCTAATCTCACG
AATTGGCGTTGAAAGATATGATGAGCTCCCGCATGAGCTTGAAGGATCTG
ACCATCGAATGCCTGCTCCTCATATTCGACTATTGCTCGGAGGGGGACCT
ACTGTGCCTGTGCCGGGCGGACCCGGCTCTGGAGTATATTATTGAAGCCT
ACTACTTCTACCCACTGGCCTACGATTTGCTGCTCTGTGGCCACCGGAAT
AATCCAAGGATCGAACAGAGAAACCGAAGACGCCTGAAAAACTATGAACG
CATCGAGCTGTCAAGGAACTGGGTTAGTGGCACCTATTTCGAACGACCAT
ACTTCCACCATGCCCAGATGTTCCCCACCAAACTGTGCCTGGAGGCCGAC
TTTCTGTACATCACACATGCCTGCTATCTGCGCAAGTACCGGCGGTCCAG
CTGCGATGCACTGCATCGTCGCTTCGACGAGGAGATCTGTACGTCCGCAC
AGACCGACATCTCCGATTTCGTCAAAAAGAATGAAACCATATTCGCGGGA
AGGGTTTGTGGATCGTGCTTCCACTACGACACCGATAGCATGGTGATGAC
GGAGCAGAGGATGCATCCGGCCAACGAATACTTGTACTGCGTAGACTTTG
TCAAGGATCTGTACGCAACCAGCACAGATCACTGCTGCAGACTGTGGCAG
CGTGCGCAGGAGTTTGGAATGACGCATTTTGATCAGGTGATGCATCTGCC
GCACGCCTTTAGGTCTCTGGAACTCAGTTCGGATGGCCAGTGGCTGTATG
GTGGACTATACACTGACAACGGTCGCCAGGCCTTGAGGGCAGTCCATGTT
GAAAGTGGCGAGGAATTGGTGTTTAGTTCCAAAACAATGTCAATTTACGA
CCTGAAATTGAAAGATGACCAGGTCATTTTCACGGCCAACTTCGATAGCA
CGTTTCGTATGTTTGACAGACGCGTGGATCGCGATGTAGCCATTTGGGAT
GATCCGTTCGACTCCTCCTTCTACTCCTTGGAGTATGATGGTCTGCACGC
GGTGCTGGTTGGCACCAACAGACATGCACGGGTCAACCTTTACGATATAA
GAATGAAGAAATACGTACAATTGTACTTTCCGGGAAGGACGCGAAGTCAT
AATGGCTTGTCGCCAGTGTACAGCCTCGCCTGTGATAGCCAATATATGTT
CGTGGCCACCGATCACAATATGCGTGTCTTTGACTTTAAGGCAAGCTGTG
GAATTCGGAGAGACTACAGCAATATTGTATACAAACGAAGTGAAACTTAA
TCACATTGGATAACCCATATTAAAAATGTGCCAAATCTTATACATTCATT
GTTTTGAAGAAACCAAATGCGCCGTACAAATATACATTCAAGATGTCTGC
TGATTTCCCGTAAAGCGTACTATTTGTTCTTATCAGAACAACTCGTGTCT
AGTTTATTACGGAATTTTTTTAGAATAACACAAACCTTAACAATAATTGT
ATAAGTAGGCAAAGGTAGAGAGAAGGCTATTACCGTCTTGTTTTTAAACT
GTATCATCATACCATCAGTTTGTGTAGAACAAGTTTTATTGACCTGTCCA
CGAATTGGATCCTAAAAAGAAAACTTTAAAACATCCACTTAAAGCATGTA
TAAAAACGCTAAAAAAAAAAAAAAAA

RE11703.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33969-RB 3661 CG33969-RB 170..1831 1..1662 8295 99.9 Plus
CG33969-RA 1904 CG33969-RA 170..1831 1..1662 8295 99.9 Plus
CG33969.a 3628 CG33969.a 414..1798 278..1662 6910 99.9 Plus
CG33969.a 3628 CG33969.a 146..416 1..271 1355 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20380744..20381549 1658..854 3980 99.9 Minus
chr3L 24539361 chr3L 20381699..20382285 855..269 2935 100 Minus
chr3L 24539361 chr3L 20382337..20382606 270..1 1350 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:34:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20391683..20392491 1662..854 4030 99.9 Minus
3L 28110227 3L 20392641..20393227 855..269 2935 100 Minus
3L 28110227 3L 20393279..20393548 270..1 1350 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20384783..20385591 1662..854 4030 99.8 Minus
3L 28103327 3L 20385741..20386327 855..269 2935 100 Minus
3L 28103327 3L 20386379..20386648 270..1 1350 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:07:36 has no hits.

RE11703.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:08:25 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20380742..20381547 856..1660 99 <- Minus
chr3L 20381699..20382283 271..855 100 <- Minus
chr3L 20382337..20382606 1..270 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:54:17 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 1..1233 68..1300 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:26:35 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 1..1233 68..1300 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:32:02 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RA 1..1233 68..1300 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:01:46 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 1..1233 68..1300 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:30 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RA 1..1233 68..1300 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:53:08 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 1..1659 1..1660 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:26:35 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 1..1659 1..1660 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:32:02 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RA 6..1664 1..1660 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:01:46 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 1..1659 1..1660 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:30 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
CG33969-RA 6..1664 1..1660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:25 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20391685..20392489 856..1660 99 <- Minus
3L 20392641..20393225 271..855 100 <- Minus
3L 20393279..20393548 1..270 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:25 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20391685..20392489 856..1660 99 <- Minus
3L 20392641..20393225 271..855 100 <- Minus
3L 20393279..20393548 1..270 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:25 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20391685..20392489 856..1660 99 <- Minus
3L 20392641..20393225 271..855 100 <- Minus
3L 20393279..20393548 1..270 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:32:02 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20384785..20385589 856..1660 99 <- Minus
arm_3L 20385741..20386325 271..855 100 <- Minus
arm_3L 20386379..20386648 1..270 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:34:55 Download gff for RE11703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20384785..20385589 856..1660 99 <- Minus
3L 20385741..20386325 271..855 100 <- Minus
3L 20386379..20386648 1..270 100   Minus

RE11703.pep Sequence

Translation from 67 to 1299

> RE11703.pep
MMSSRMSLKDLTIECLLLIFDYCSEGDLLCLCRADPALEYIIEAYYFYPL
AYDLLLCGHRNNPRIEQRNRRRLKNYERIELSRNWVSGTYFERPYFHHAQ
MFPTKLCLEADFLYITHACYLRKYRRSSCDALHRRFDEEICTSAQTDISD
FVKKNETIFAGRVCGSCFHYDTDSMVMTEQRMHPANEYLYCVDFVKDLYA
TSTDHCCRLWQRAQEFGMTHFDQVMHLPHAFRSLELSSDGQWLYGGLYTD
NGRQALRAVHVESGEELVFSSKTMSIYDLKLKDDQVIFTANFDSTFRMFD
RRVDRDVAIWDDPFDSSFYSLEYDGLHAVLVGTNRHARVNLYDIRMKKYV
QLYFPGRTRSHNGLSPVYSLACDSQYMFVATDHNMRVFDFKASCGIRRDY
SNIVYKRSET*

RE11703.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24141-PA 415 GF24141-PA 1..407 1..408 1555 72.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13320-PA 409 GG13320-PA 1..403 1..403 1999 91.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14594-PA 402 GH14594-PA 1..396 6..402 1417 65.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG33969-PA 410 CG33969-PA 1..410 1..410 2221 100 Plus
CG33969-PC 407 CG33969-PC 1..407 1..410 2191 99.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13479-PA 230 GI13479-PA 1..226 182..404 879 72.1 Plus
Dmoj\GI13478-PA 163 GI13478-PA 1..148 6..153 432 56.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11912-PA 401 GL11912-PA 1..396 6..403 1543 69.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18978-PA 401 GA18978-PA 1..396 6..403 1543 69.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22223-PA 410 GM22223-PA 1..410 1..410 2078 93.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12195-PA 410 GD12195-PA 1..410 1..410 2110 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11841-PA 404 GJ11841-PA 1..398 6..402 1357 62.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17228-PA 409 GK17228-PA 2..399 6..403 1498 69.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22408-PA 409 GE22408-PA 2..404 1..403 2002 92.1 Plus

RE11703.hyp Sequence

Translation from 67 to 1299

> RE11703.hyp
MMSSRMSLKDLTIECLLLIFDYCSEGDLLCLCRADPALEYIIEAYYFYPL
AYDLLLCGHRNNPRIEQRNRRRLKNYERIELSRNWVSGTYFERPYFHHAQ
MFPTKLCLEADFLYITHACYLRKYRRSSCDALHRRFDEEICTSAQTDISD
FVKKNETIFAGRVCGSCFHYDTDSMVMTEQRMHPANEYLYCVDFVKDLYA
TSTDHCCRLWQRAQEFGMTHFDQVMHLPHAFRSLELSSDGQWLYGGLYTD
NGRQALRAVHVESGEELVFSSKTMSIYDLKLKDDQVIFTANFDSTFRMFD
RRVDRDVAIWDDPFDSSFYSLEYDGLHAVLVGTNRHARVNLYDIRMKKYV
QLYFPGRTRSHNGLSPVYSLACDSQYMFVATDHNMRVFDFKASCGIRRDY
SNIVYKRSET*

RE11703.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33969-PA 410 CG33969-PA 1..410 1..410 2221 100 Plus
CG33969-PC 407 CG33969-PC 1..407 1..410 2191 99.3 Plus