Clone RE11751 Report

Search the DGRC for RE11751

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:117
Well:51
Vector:pFlc-1
Associated Gene/TranscriptCG15643-RA
Protein status:RE11751.pep: gold
Preliminary Size:639
Sequenced Size:1661

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15643 2001-12-12 Blastp of sequenced clone
CG15643 2002-01-01 Sim4 clustering to Release 2
CG15643 2008-04-29 Release 5.5 accounting
CG15643 2008-08-15 Release 5.9 accounting
CG15643 2008-12-18 5.12 accounting

Clone Sequence Records

RE11751.complete Sequence

1661 bp (1661 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070573

> RE11751.complete
GATTTGGGAATTTGTTTTTGTGCTTGCTAACGAATTTCGCTTCCATTTAT
TGCAAGAAAAAAAAAAAAAACAAAATAATACAAATAGAGGCATAGTGGGC
CAGTAACTGATTGCACACCATGCTGCAACGCAGAGAAAAGAGAGCTCCCC
CTTTCAATTTGAAGAGATCTTTTTCCAACGAGGAAGTTGCCTAGAAAAGT
TCATCAACAATCCAGGAAAATTTCATCAGTTCAGTTCTGAGTGAAAAGTG
CACCGACACTGCAACTGGATGTAATCACGATCAGCAGAAGTAGCTGAAGT
CATCCGAGGAGTGACAGCACCCAATGCCCCAGTAGCATTCAAACTGAAAA
ATTCCCCGATTGTGGCCACTGCCATGTCCGTGTCCCAGGAGAATTACACC
CGGCGGGAGCTGTGATGGAGCGCTAGGTATTGGCCAGGATGTGGCCAGCC
GCCCTGACACGCCTGCTGAGACGCCGGATTGTGTACATCGTGCTGGTGGT
ACTGCTGCTCATCTACGGATTCGGACACATTTTCGATCGGGACTCGTTTT
CCGGCCTGCACTATGACGAGTATGTGGTGCAGCGCACACGACCGCTCCTG
TGGACGCAGCAGCTTCTGGCGCCGGAGGAGCAGCTCAATCGCACGCGCGG
CGATCCCGAGGCACGCTGCCGCAACTCTGTCCAGGGCCGCCAATGGCTGG
CGGACGAGCGAGGATTCGTGTGCCGACGCGAGGAGGTGCTAACCAACGGC
TGCTGCAACCTGGAGCTGCCCGGCATTGGATACTACAGCTGCCGCACATG
CAATACCAGCACCCACTGTTGCGGTGTTTATGAGTATTGCGTCTCCTGCT
GCCTGCACCCCGGACAACAGCCGCTGCTGGAGCGCGTCCTGCAGGCGCCC
AACACGCCCAAGTACATCTTCGCCAGCGTGACGGACCACTTCGAGCTGTG
CCTGGTCAAGTGCCGCACGAACTCGCACTCCGTGGAGCACGAGAACAAGT
ACCGCGATCCGGCGGCCAAGCATTGTTATGGTCTAACCGATGCGCACGAA
TCCCAGCGTGATGTTGCGCCCCAGTGAGCCAGTCGCAGCTGACCACTGCG
TTCACCTTCTACTGACCACCGTCCAGTACGATGACTCTGCCTTGTGTACA
ACGTTTTCGGCCGGCACACATAGACGTTCAACGGATGAGCTTTACCTCGA
ACTAGAAATGAGAAAGTTTTAAGTCATCAGCTGGTTCGTTGGCAATATTT
CTACTAAGTCAGGGATCGCTTTAGGCTAGAAGTAATACGTTTTCTCTCTT
ATTTACTGCTTAATTAATTCATTAATAACAACTATAGAACATAATCGATC
ACATTTTTTTTTTTAACTAAATCGAATTTAGTTTGTATCTTTAGCCAACA
GATGTTTTATAGCTCTTTTTTATGTTTAATGGCTTTAATTTTATTTTATA
ATGCAATATTGCCTAGCCATAAGCTATAGAAATGTGCAATTTTCGTATTT
TAGCGTTAGACGAATACAATTGATTATCCATGTTTAATTGTGTGAATAAA
TAAGCAGTGGATATAATCAAATAAGCAAGAAATAGTGTGGTCAACATTAA
TTTATTTATATAGTCTCTTGATCAAATGAACTAACTATTTAAAACAAAAA
AAAAAAAAAAA

RE11751.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15643-RA 1692 CG15643-RA 1..1648 2..1648 8170 99.8 Plus
CG7860.a 1316 CG7860.a 1241..1316 1208..1133 350 97.3 Minus
CG7860-RA 1449 CG7860-RA 1385..1449 1648..1584 325 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15460300..15461404 1645..540 5390 99.4 Minus
chrX 22417052 chrX 15461481..15462020 541..2 2685 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:34:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15570377..15571486 1648..540 5485 99.8 Minus
X 23542271 X 15571563..15572102 541..2 2685 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15578475..15579584 1648..540 5495 99.8 Minus
X 23527363 X 15579661..15580200 541..2 2685 99.8 Minus
Blast to na_te.dros performed on 2019-03-15 14:02:56 has no hits.

RE11751.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:03:44 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15460300..15461403 541..1645 99 <- Minus
chrX 15461482..15462020 1..540 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:54:20 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
CG15643-RA 1..639 439..1077 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:17:15 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
CG15643-RA 1..639 439..1077 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:16:21 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
CG15643-RA 1..639 439..1077 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:43:20 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
CG15643-RA 1..639 439..1077 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:48:19 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
CG15643-RA 1..639 439..1077 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:49:48 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
CG15643-RA 1..1645 2..1645 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:17:15 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
CG15643-RA 1..1645 2..1645 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:16:21 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
CG15643-RA 47..1692 1..1645 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:43:20 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
CG15643-RA 1..1645 2..1645 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:48:19 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
CG15643-RA 47..1692 1..1645 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:03:44 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
X 15570380..15571485 541..1645 99 <- Minus
X 15571564..15572102 1..540 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:03:44 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
X 15570380..15571485 541..1645 99 <- Minus
X 15571564..15572102 1..540 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:03:44 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
X 15570380..15571485 541..1645 99 <- Minus
X 15571564..15572102 1..540 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:16:21 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15464413..15465518 541..1645 99 <- Minus
arm_X 15465597..15466135 1..540 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:19:28 Download gff for RE11751.complete
Subject Subject Range Query Range Percent Splice Strand
X 15578478..15579583 541..1645 99 <- Minus
X 15579662..15580200 1..540 99   Minus

RE11751.pep Sequence

Translation from 438 to 1076

> RE11751.pep
MWPAALTRLLRRRIVYIVLVVLLLIYGFGHIFDRDSFSGLHYDEYVVQRT
RPLLWTQQLLAPEEQLNRTRGDPEARCRNSVQGRQWLADERGFVCRREEV
LTNGCCNLELPGIGYYSCRTCNTSTHCCGVYEYCVSCCLHPGQQPLLERV
LQAPNTPKYIFASVTDHFELCLVKCRTNSHSVEHENKYRDPAAKHCYGLT
DAHESQRDVAPQ*

RE11751.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22253-PA 217 GF22253-PA 1..213 1..212 793 67.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19394-PA 217 GG19394-PA 1..212 1..212 1103 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11862-PA 214 GH11862-PA 1..211 1..211 864 74.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15643-PB 212 CG15643-PB 1..212 1..212 1173 100 Plus
CG15643-PA 212 CG15643-PA 1..212 1..212 1173 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15640-PA 216 GI15640-PA 1..212 1..212 872 75.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16447-PA 216 GL16447-PA 1..211 1..211 826 77.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13867-PA 216 GA13867-PA 1..211 1..211 833 78.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22548-PA 197 GM22548-PA 1..197 1..211 916 90 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24664-PA 127 GD24664-PA 1..126 1..126 661 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19227-PA 215 GJ19227-PA 1..211 1..212 836 75.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19833-PA 215 GK19833-PA 1..211 1..212 779 72.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16041-PA 217 GE16041-PA 1..212 1..212 1118 98.1 Plus

RE11751.hyp Sequence

Translation from 438 to 1076

> RE11751.hyp
MWPAALTRLLRRRIVYIVLVVLLLIYGFGHIFDRDSFSGLHYDEYVVQRT
RPLLWTQQLLAPEEQLNRTRGDPEARCRNSVQGRQWLADERGFVCRREEV
LTNGCCNLELPGIGYYSCRTCNTSTHCCGVYEYCVSCCLHPGQQPLLERV
LQAPNTPKYIFASVTDHFELCLVKCRTNSHSVEHENKYRDPAAKHCYGLT
DAHESQRDVAPQ*

RE11751.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15643-PB 212 CG15643-PB 1..212 1..212 1173 100 Plus
CG15643-PA 212 CG15643-PA 1..212 1..212 1173 100 Plus