BDGP Sequence Production Resources |
Search the DGRC for RE11768
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 117 |
Well: | 68 |
Vector: | pFlc-1 |
Associated Gene/Transcript | IntS12-RA |
Protein status: | RE11768.pep: gold |
Preliminary Size: | 987 |
Sequenced Size: | 1182 |
Gene | Date | Evidence |
---|---|---|
CG5491 | 2001-12-12 | Blastp of sequenced clone |
CG5491 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5491 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5491 | 2008-04-29 | Release 5.5 accounting |
CG5491 | 2008-08-15 | Release 5.9 accounting |
CG5491 | 2008-12-18 | 5.12 accounting |
1182 bp (1182 high quality bases) assembled on 2001-12-12
GenBank Submission: AY070574
> RE11768.complete AAAATAAACAGCTGTTGCGCGGGCATAAACTTGCATTTATATTGTTATTT ACTATATCTACCCGGTATTAAGATGGCCGCAAATATAGCCGCCGCTGCTG CAGCTGCCCAAGAAGTGGATCCCGTGCTGAAGAAGGCCATCAAGTTGCTG CACTCGAGTAATCCCACCTCGGCGGCCGAACTGCGTCTGCTTTTGGACGA GGCTTTGAAGGCGCGTTTTGGTCCGGAGAAAAGTTTGACCAACAACATGA CGCCACGGATGCTGGAGGATGAAGCGAACTTTTCCGGACGTGCTGCCACG CCCCCGCAGCAGCCCATCAATGCGGACGAGATCATCAATTTGACCAACTC ACCGGACAAGGAGCCCTCCGATTCGGTGGACACGATTGCGGATTCGGATG ACGGTCTAAGCGCCGTGGGAATAGTTAACACCGGTGACACCGGCGACTTT GGCGACCTCAATTGCTGCGTGTGCGGCGAGATGGTTTTCACGGCCACCAA TCGGCTGATTGAGTGCTCCAAGTGCGGTGCCATGTACCATCAGGAGTGCC ACAAGCCGCCCATAACCAAGGAGGAGGCGGCCGATGACCAGGAGCAGAAC TGGCAGTGCGACACGTGCTGCAACAAGCCAACGAGCAGCGGGAGGACAAC ATCCTCTGCAGCGGCCGTAACGCCAACTGTCTTCATAGCCGACGAACCCA TGCCGTTGACCAGCAAAGCCAAATCGTCGGTCGCGTCGTCGCGCTCATCG AACTCTTCCAACTCCTCGTCACCCTTCTACCGGCCCGAGCCCAGCAGTTC CACGAATGCCAGCAGCAGTAGCAGCAGCAAGCATGGCCACAAGTCCTCCT CTTCGTCGTCGTCCAAATCGCACAAGGAAGAACGATCCTCTAAGTCCACG GCGGCGTCTTCTCTTAGCGCCATCGGCGGAATGGAGAAGCACAACAGCAG TGGCACCTCATCGCGACGCAGCGGCTCCAGCACCAAATCCAGCTCCAAGA GCAGTTCCTCCAAGCATCACGAAAGCGGCAGCAGCAGCAAGCGCAGATCC AAGCAGTAATTTAGCATCTCTAATAATTAAGTATAAAGTTACAATCCGCA TAAAATTCTGAACGTTCATTCATAATAATAATTCAATAATTCATTTTCAA TAAATGATTTTTAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5491-RA | 1170 | CG5491-RA | 2..1165 | 2..1165 | 5805 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 22686527..22687690 | 2..1165 | 5805 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 26863399..26864562 | 2..1165 | 5805 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 26604230..26605393 | 2..1165 | 5805 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6895 | 916..1076 | 163 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2420 | 935..1040 | 142 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6826 | 968..1059 | 142 | 66 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1508..1632 | 981..1103 | 132 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2531 | 792..1004 | 132 | 56.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6825 | 935..1045 | 131 | 64.6 | Plus |
Stalker | 7256 | Stalker STALKER 7256bp | 6728..6822 | 1063..1155 | 127 | 62.1 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1038..1131 | 1162..1070 | 125 | 60.6 | Minus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 6836..6929 | 1063..1155 | 124 | 63.2 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1048..1157 | 1162..1055 | 121 | 60.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2372 | 980..1046 | 119 | 64.2 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1072..1158 | 1153..1071 | 119 | 63.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2468 | 921..1040 | 110 | 59.7 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..1001 | 800..830 | 110 | 83.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 22686526..22687690 | 1..1166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5491-RA | 1..987 | 73..1059 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5491-RA | 1..987 | 73..1059 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
IntS12-RA | 1..987 | 73..1059 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5491-RA | 1..987 | 73..1059 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
IntS12-RA | 1..987 | 73..1059 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5491-RA | 2..1165 | 2..1166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5491-RA | 2..1165 | 2..1166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
IntS12-RA | 23..1184 | 1..1162 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5491-RA | 2..1165 | 2..1166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
IntS12-RA | 23..1184 | 1..1162 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26863398..26864562 | 1..1166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26863398..26864562 | 1..1166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26863398..26864562 | 1..1166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 22689120..22690284 | 1..1166 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 26604229..26605393 | 1..1166 | 99 | Plus |
Translation from 0 to 1058
> RE11768.hyp QTNSCCAGINLHLYCYLLYLPGIKMAANIAAAAAAAQEVDPVLKKAIKLL HSSNPTSAAELRLLLDEALKARFGPEKSLTNNMTPRMLEDEANFSGRAAT PPQQPINADEIINLTNSPDKEPSDSVDTIADSDDGLSAVGIVNTGDTGDF GDLNCCVCGEMVFTATNRLIECSKCGAMYHQECHKPPITKEEAADDQEQN WQCDTCCNKPTSSGRTTSSAAAVTPTVFIADEPMPLTSKAKSSVASSRSS NSSNSSSPFYRPEPSSSTNASSSSSSKHGHKSSSSSSSKSHKEERSSKST AASSLSAIGGMEKHNSSGTSSRRSGSSTKSSSKSSSSKHHESGSSSKRRS KQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
IntS12-PA | 328 | CG5491-PA | 1..328 | 25..352 | 1665 | 100 | Plus |
PNUTS-PA | 628 | CG33526-PA | 296..428 | 196..347 | 184 | 34.9 | Plus |
PNUTS-PB | 628 | CG33526-PB | 296..428 | 196..347 | 184 | 34.9 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 296..428 | 196..347 | 184 | 34.9 | Plus |
PNUTS-PD | 1135 | CG33526-PD | 296..428 | 196..347 | 184 | 34.9 | Plus |
PNUTS-PA | 628 | CG33526-PA | 305..425 | 237..351 | 170 | 43 | Plus |
PNUTS-PB | 628 | CG33526-PB | 305..425 | 237..351 | 170 | 43 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 305..425 | 237..351 | 170 | 43 | Plus |
PNUTS-PA | 628 | CG33526-PA | 260..407 | 213..351 | 169 | 37.7 | Plus |
PNUTS-PB | 628 | CG33526-PB | 260..407 | 213..351 | 169 | 37.7 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 260..407 | 213..351 | 169 | 37.7 | Plus |
Translation from 72 to 1058
> RE11768.pep MAANIAAAAAAAQEVDPVLKKAIKLLHSSNPTSAAELRLLLDEALKARFG PEKSLTNNMTPRMLEDEANFSGRAATPPQQPINADEIINLTNSPDKEPSD SVDTIADSDDGLSAVGIVNTGDTGDFGDLNCCVCGEMVFTATNRLIECSK CGAMYHQECHKPPITKEEAADDQEQNWQCDTCCNKPTSSGRTTSSAAAVT PTVFIADEPMPLTSKAKSSVASSRSSNSSNSSSPFYRPEPSSSTNASSSS SSKHGHKSSSSSSSKSHKEERSSKSTAASSLSAIGGMEKHNSSGTSSRRS GSSTKSSSKSSSSKHHESGSSSKRRSKQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16457-PA | 331 | GF16457-PA | 1..291 | 1..289 | 1024 | 85.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11505-PA | 332 | GG11505-PA | 1..332 | 1..328 | 1612 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14241-PA | 356 | GH14241-PA | 13..324 | 13..293 | 838 | 66.3 | Plus |
Dgri\GH14243-PA | 293 | GH14243-PA | 2..157 | 55..199 | 532 | 67.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
IntS12-PA | 328 | CG5491-PA | 1..328 | 1..328 | 1665 | 100 | Plus |
PNUTS-PA | 628 | CG33526-PA | 296..428 | 172..323 | 184 | 34.9 | Plus |
PNUTS-PB | 628 | CG33526-PB | 296..428 | 172..323 | 184 | 34.9 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 296..428 | 172..323 | 184 | 34.9 | Plus |
PNUTS-PD | 1135 | CG33526-PD | 296..428 | 172..323 | 184 | 34.9 | Plus |
Mur89F-PC | 2158 | CG4090-PC | 294..409 | 213..328 | 175 | 34.5 | Plus |
Mur89F-PB | 2159 | CG4090-PB | 294..409 | 213..328 | 175 | 34.5 | Plus |
PNUTS-PA | 628 | CG33526-PA | 305..425 | 213..327 | 170 | 43 | Plus |
PNUTS-PB | 628 | CG33526-PB | 305..425 | 213..327 | 170 | 43 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 305..425 | 213..327 | 170 | 43 | Plus |
PNUTS-PD | 1135 | CG33526-PD | 305..425 | 213..327 | 170 | 43 | Plus |
PNUTS-PA | 628 | CG33526-PA | 260..407 | 189..327 | 169 | 37.7 | Plus |
PNUTS-PB | 628 | CG33526-PB | 260..407 | 189..327 | 169 | 37.7 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 260..407 | 189..327 | 169 | 37.7 | Plus |
PNUTS-PD | 1135 | CG33526-PD | 260..407 | 189..327 | 169 | 37.7 | Plus |
Mur89F-PC | 2158 | CG4090-PC | 272..439 | 165..328 | 162 | 26.8 | Plus |
Mur89F-PB | 2159 | CG4090-PB | 272..439 | 165..328 | 162 | 26.8 | Plus |
BOD1-PC | 1109 | CG5514-PC | 624..736 | 222..328 | 157 | 38.9 | Plus |
BOD1-PA | 1109 | CG5514-PA | 624..736 | 222..328 | 157 | 38.9 | Plus |
BOD1-PD | 1150 | CG5514-PD | 624..736 | 222..328 | 157 | 38.9 | Plus |
BOD1-PB | 1150 | CG5514-PB | 624..736 | 222..328 | 157 | 38.9 | Plus |
BOD1-PE | 1151 | CG5514-PE | 624..736 | 222..328 | 157 | 38.9 | Plus |
Mur89F-PC | 2158 | CG4090-PC | 1079..1192 | 211..326 | 154 | 39.7 | Plus |
Mur89F-PB | 2159 | CG4090-PB | 1079..1192 | 211..326 | 154 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22148-PA | 329 | GI22148-PA | 13..329 | 13..327 | 903 | 73.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27225-PA | 293 | GL27225-PA | 13..188 | 13..189 | 858 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18923-PA | 340 | GA18923-PA | 13..295 | 13..292 | 1002 | 79.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10347-PA | 330 | GM10347-PA | 1..330 | 1..328 | 1670 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21308-PA | 330 | GD21308-PA | 1..330 | 1..328 | 1672 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24266-PA | 331 | GJ24266-PA | 13..295 | 13..290 | 937 | 78.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13545-PA | 334 | GK13545-PA | 13..293 | 13..294 | 980 | 80.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23694-PA | 331 | GE23694-PA | 13..289 | 13..289 | 1199 | 96.8 | Plus |