Clone RE11907 Report

Search the DGRC for RE11907

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:119
Well:7
Vector:pFlc-1
Associated Gene/TranscriptCG32803-RA
Protein status:RE11907.pep: gold
Sequenced Size:827

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32803 2003-01-01 Sim4 clustering to Release 3
CG32803 2004-08-13 Blastp of sequenced clone
CG32803 2008-04-29 Release 5.5 accounting
CG32803 2008-08-15 Release 5.9 accounting
CG32803 2008-12-18 5.12 accounting

Clone Sequence Records

RE11907.complete Sequence

827 bp (827 high quality bases) assembled on 2004-08-13

GenBank Submission: BT016026

> RE11907.complete
GTTTTCATTTACTGTTGCTTCAAGCAGGCGAATGAACCTGGAACAGACTC
CTCCTGTAATGCGCACAGCAACCGCCTGAGATTCTCGCAGTAGCCACGCA
ACATGGCTCACTCGAACAAGGCTCGCAAAGCAGCCAAAGAGGCAAACGCC
AAGAAGTCTGCGGGATCGGGAACAGAGAGCAAACCGGAGCACGTAAAGAT
ACATGGCCCAGGCGATCGTAGTGCAGGAGTTCTGACTGGCGACCAGTTCC
TGGAGAGCTTGCTCCAGACTCTCTACAGGTCATGGCTTCAAATCTGCCGC
CTGGCAGATTTTGTGATGTCCGAGCTAGGTGGAAATGATTTCCTGGAGGC
CACCGCGGCCTGGTGCACCCGGAATCCGCACGTTGCTATCTGCCTGCTAG
CTGGTGGTCTTGTATTCATGCTGCCCTTCCTTATAATATTTGGGTTTGGA
ATAGCCACCATGGTTATGACCTTTACAGGTTTGCTGGTGCTAGAAGGCAC
ACTCCTGACCATTGTGTCCATGGTGTTCTTCGCCTGCCTGGGAGGACTAG
TCATAATGGTACCTCTCTTCGGTGTCGCCGCTGTTGCTGCCTATTTCGGA
TTTGCCCAGGTGTATGGCCTATGTGATGGAATAGAGATCCATAAGAGCGC
GTGGGTCATGTTCTTTAGGGATCAACGGAAGGCCGGCGATCCGCCGCCAG
CTGCTGTGACCATAACCGATGAACCCACTTCTACGACTGCATAAACCAAT
ATTGCTTGCCCAACTTAAATATGTATTAAGAAATTAAAGACCAGTGTTTG
AATACTTTTGGAAAAAAAAAAAAAAAA

RE11907.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG32803-RA 940 CG32803-RA 117..930 1..814 4070 100 Plus
CG32803-RB 876 CG32803-RB 338..868 284..814 2655 100 Plus
nc_21462.b 794 nc_21462.b 83..262 284..105 900 100 Minus
CG32803-RB 876 CG32803-RB 1..179 106..284 895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1794542..1794858 811..495 1585 100 Minus
chrX 22417052 chrX 1794907..1795120 497..284 1070 100 Minus
chrX 22417052 chrX 1795279..1795458 284..105 900 100 Minus
chrX 22417052 chrX 1795642..1795747 106..1 530 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:34:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1900696..1901015 814..495 1600 100 Minus
X 23542271 X 1901064..1901277 497..284 1070 100 Minus
X 23542271 X 1901436..1901615 284..105 900 100 Minus
X 23542271 X 1901799..1901904 106..1 530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1908794..1909113 814..495 1600 100 Minus
X 23527363 X 1909162..1909375 497..284 1070 100 Minus
X 23527363 X 1909534..1909713 284..105 900 100 Minus
X 23527363 X 1909897..1910002 106..1 530 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:50:08 has no hits.

RE11907.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:51:23 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1794542..1794856 497..811 100 <- Minus
chrX 1794908..1795120 284..496 100 <- Minus
chrX 1795280..1795457 106..283 100 <- Minus
chrX 1795643..1795747 1..105 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:54:23 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 1..642 103..744 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:29:51 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 1..642 103..744 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:17:24 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 1..642 103..744 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:16:18 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 1..642 103..744 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:26 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 1..642 103..744 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:37:40 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 35..845 1..811 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:29:51 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 35..845 1..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:17:24 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 8..818 1..811 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:16:18 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 35..845 1..811 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:26 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 8..818 1..811 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:51:23 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
X 1901437..1901614 106..283 100 <- Minus
X 1901800..1901904 1..105 100   Minus
X 1900699..1901013 497..811 100 <- Minus
X 1901065..1901277 284..496 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:51:23 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
X 1901437..1901614 106..283 100 <- Minus
X 1901800..1901904 1..105 100   Minus
X 1900699..1901013 497..811 100 <- Minus
X 1901065..1901277 284..496 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:51:23 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
X 1901437..1901614 106..283 100 <- Minus
X 1901800..1901904 1..105 100   Minus
X 1900699..1901013 497..811 100 <- Minus
X 1901065..1901277 284..496 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:17:24 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1794732..1795046 497..811 100 <- Minus
arm_X 1795098..1795310 284..496 100 <- Minus
arm_X 1795470..1795647 106..283 100 <- Minus
arm_X 1795833..1795937 1..105 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:50:30 Download gff for RE11907.complete
Subject Subject Range Query Range Percent Splice Strand
X 1909163..1909375 284..496 100 <- Minus
X 1909535..1909712 106..283 100 <- Minus
X 1909898..1910002 1..105 100   Minus
X 1908797..1909111 497..811 100 <- Minus

RE11907.pep Sequence

Translation from 102 to 743

> RE11907.pep
MAHSNKARKAAKEANAKKSAGSGTESKPEHVKIHGPGDRSAGVLTGDQFL
ESLLQTLYRSWLQICRLADFVMSELGGNDFLEATAAWCTRNPHVAICLLA
GGLVFMLPFLIIFGFGIATMVMTFTGLLVLEGTLLTIVSMVFFACLGGLV
IMVPLFGVAAVAAYFGFAQVYGLCDGIEIHKSAWVMFFRDQRKAGDPPPA
AVTITDEPTSTTA*

RE11907.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19473-PA 183 GF19473-PA 20..178 51..212 473 55.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12669-PA 213 GG12669-PA 1..212 1..212 1001 88.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17846-PA 151 GH17846-PA 1..146 57..206 345 47.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32803-PA 213 CG32803-PA 1..213 1..213 1103 100 Plus
CG32803-PC 242 CG32803-PC 31..242 2..213 1098 100 Plus
CG32803-PD 207 CG32803-PD 1..207 1..213 1059 97.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21759-PA 126 GI21759-PA 1..126 72..209 330 51.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18346-PA 194 GL18346-PA 1..187 2..208 492 55 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27596-PA 305 GA27596-PA 156..302 44..194 517 69.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18938-PA 212 GM18938-PA 1..212 1..213 959 93 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16404-PA 212 GD16404-PA 1..212 1..213 967 93.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19137-PA 164 GJ19137-PA 1..164 38..205 347 45.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16375-PA 236 GK16375-PA 5..218 3..203 452 45.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16997-PA 213 GE16997-PA 1..212 1..212 915 86.8 Plus

RE11907.hyp Sequence

Translation from 102 to 743

> RE11907.hyp
MAHSNKARKAAKEANAKKSAGSGTESKPEHVKIHGPGDRSAGVLTGDQFL
ESLLQTLYRSWLQICRLADFVMSELGGNDFLEATAAWCTRNPHVAICLLA
GGLVFMLPFLIIFGFGIATMVMTFTGLLVLEGTLLTIVSMVFFACLGGLV
IMVPLFGVAAVAAYFGFAQVYGLCDGIEIHKSAWVMFFRDQRKAGDPPPA
AVTITDEPTSTTA*

RE11907.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32803-PA 213 CG32803-PA 1..213 1..213 1103 100 Plus
CG32803-PC 242 CG32803-PC 31..242 2..213 1098 100 Plus
CG32803-PD 207 CG32803-PD 1..207 1..213 1059 97.2 Plus
CG32803-PB 142 CG32803-PB 1..142 72..213 738 100 Plus