BDGP Sequence Production Resources |
Search the DGRC for RE11908
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 119 |
Well: | 8 |
Vector: | pFlc-1 |
Associated Gene/Transcript | blp-RA |
Protein status: | RE11908.pep: gold |
Preliminary Size: | 426 |
Sequenced Size: | 965 |
Gene | Date | Evidence |
---|---|---|
CG5268 | 2001-12-14 | Blastp of sequenced clone |
CG5268 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5268 | 2003-01-01 | Sim4 clustering to Release 3 |
blp | 2008-04-29 | Release 5.5 accounting |
blp | 2008-08-15 | Release 5.9 accounting |
blp | 2008-12-18 | 5.12 accounting |
965 bp (965 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071034
> RE11908.complete AGCGGTTTCACCTGCTTTTCGCCGCCTGCTCGTTAGTAAATATCTGGAGT AAAAGCTAAAATTTACCTGAAGGACGCCTTTTAAATAGTACAATTGGAAC ACGGAGGGTCACTACGGTGTTGCGTAATTAAAGCGACACGTTTTCTGAGA CCCAAAATTAAGCTGTACACATAGAATGCCGGTGTTTTGACGTACGAATC CAAGGAATACAAGAAACCGTCATGGCCAAGTATATCGCCCAGATCATCGT GTTGGGCGCCCAGGCAGTGGGAAGAGCCTTTACCAAGGCGCTGCGCCAGG AGATCGCCGCATCTCAGGAAGCAGCACGACGGGCGGGTGGTGGCAAGCAG GGCGACAAGAGCGCCGAGTCCAACCTGCGCACAGGCATGACGCTGGAGGA AGCCAAGCAGATCCTGAATATAGATGACCCCAAAAACGTGGACGCTATCA CCAAGAACTACGAGCATCTGTTTCAAGTCAACGAACGCTCCAAAGGCGGC TCCTTCTATATCCAGTCAAAGGTTTTCCGGGCGAAAGAGCGGCTGGACCA TGAGATTAAGGCCCATGAGCAGCCGAGGTCGTCAAATACGGAAGCAGCGC AAGATACGGCGGAGGAGTCTCAGAGCAGATCGCGGCAGCGACGCTGAGTA TCCTTGTTGTCCCAATCGAACTAATTAGCTGATAATTGATTTAAAAACTA CGTGTTAAGTACAAAAAATGAAAGTCTGTTGCTGTAAATAGAGATTTACG AACATGAAGACAAGTGTAAACACTTTCTGAGAAGAGCTCGACTTTCCAGG AACACAAATGTAATGGAATTCTTGTAAACTAACACGGATTAGCTCAGGCG GTTAGGTATAAATATTTTACTCTCAGGCCAGGTAACTAGAATCGGATCGA TTTTAAGATCACGCTTCTTGGGGTTTGAAAATAAAAATATTTTAAGTATC AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
blp-RA | 1146 | blp-RA | 85..1040 | 1..956 | 4750 | 99.7 | Plus |
blp.a | 1050 | blp.a | 30..982 | 1..956 | 4680 | 99.4 | Plus |
blp.b | 939 | blp.b | 53..939 | 70..956 | 4420 | 99.8 | Plus |
blp.b | 939 | blp.b | 18..52 | 1..35 | 160 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 11758964..11759532 | 382..950 | 2815 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 11758591..11758907 | 69..385 | 1570 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 11758456..11758524 | 1..69 | 330 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 15934372..15934946 | 382..956 | 2860 | 99.8 | Plus |
3R | 32079331 | 3R | 15933999..15934315 | 69..385 | 1585 | 100 | Plus |
3R | 32079331 | 3R | 15933864..15933932 | 1..69 | 330 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 15675203..15675777 | 382..956 | 2860 | 99.8 | Plus |
3R | 31820162 | 3R | 15674830..15675146 | 69..385 | 1585 | 100 | Plus |
3R | 31820162 | 3R | 15674695..15674763 | 1..69 | 330 | 98.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11758456..11758524 | 1..69 | 98 | -> | Plus |
chr3R | 11758592..11758906 | 70..384 | 99 | -> | Plus |
chr3R | 11758967..11759532 | 385..950 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
blp-RA | 1..426 | 222..647 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
blp-RA | 1..426 | 222..647 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
blp-RA | 1..426 | 222..647 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
blp-RA | 1..426 | 222..647 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
blp-RA | 1..426 | 222..647 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
blp-RA | 1..950 | 1..950 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
blp-RA | 1..950 | 1..950 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
blp-RA | 18..967 | 1..950 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
blp-RA | 1..950 | 1..950 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
blp-RA | 6..955 | 1..950 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15933864..15933932 | 1..69 | 98 | -> | Plus |
3R | 15934000..15934314 | 70..384 | 100 | -> | Plus |
3R | 15934375..15934940 | 385..950 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15933864..15933932 | 1..69 | 98 | -> | Plus |
3R | 15934000..15934314 | 70..384 | 100 | -> | Plus |
3R | 15934375..15934940 | 385..950 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15933864..15933932 | 1..69 | 98 | -> | Plus |
3R | 15934000..15934314 | 70..384 | 100 | -> | Plus |
3R | 15934375..15934940 | 385..950 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11759586..11759654 | 1..69 | 98 | -> | Plus |
arm_3R | 11759722..11760036 | 70..384 | 100 | -> | Plus |
arm_3R | 11760097..11760662 | 385..950 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15674831..15675145 | 70..384 | 100 | -> | Plus |
3R | 15675206..15675771 | 385..950 | 100 | Plus | |
3R | 15674695..15674763 | 1..69 | 98 | -> | Plus |
Translation from 221 to 646
> RE11908.pep MAKYIAQIIVLGAQAVGRAFTKALRQEIAASQEAARRAGGGKQGDKSAES NLRTGMTLEEAKQILNIDDPKNVDAITKNYEHLFQVNERSKGGSFYIQSK VFRAKERLDHEIKAHEQPRSSNTEAAQDTAEESQSRSRQRR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18551-PA | 142 | GF18551-PA | 1..139 | 1..140 | 565 | 83.6 | Plus |
Dana\GF21248-PA | 148 | GF21248-PA | 1..121 | 1..121 | 319 | 53.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16964-PA | 141 | GG16964-PA | 1..141 | 1..141 | 633 | 92.9 | Plus |
Dere\GG19662-PA | 151 | GG19662-PA | 1..114 | 1..113 | 319 | 56.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23473-PA | 136 | GH23473-PA | 1..136 | 1..141 | 526 | 73.9 | Plus |
Dgri\GH12586-PA | 209 | GH12586-PA | 1..121 | 1..120 | 337 | 58.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
blp-PB | 141 | CG5268-PB | 1..141 | 1..141 | 698 | 100 | Plus |
blp-PA | 141 | CG5268-PA | 1..141 | 1..141 | 698 | 100 | Plus |
CG1409-PB | 150 | CG1409-PB | 1..117 | 1..116 | 305 | 55.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22953-PA | 138 | GI22953-PA | 1..138 | 1..141 | 545 | 75.2 | Plus |
Dmoj\GI16335-PA | 171 | GI16335-PA | 1..114 | 1..114 | 310 | 54.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22082-PA | 137 | GL22082-PA | 1..137 | 1..141 | 553 | 78 | Plus |
Dper\GL14729-PA | 129 | GL14729-PA | 1..117 | 1..116 | 268 | 46.2 | Plus |
Dper\GL14733-PA | 129 | GL14733-PA | 1..114 | 1..113 | 265 | 46.5 | Plus |
Dper\GL14731-PA | 129 | GL14731-PA | 1..117 | 1..116 | 265 | 46.2 | Plus |
Dper\GL14593-PA | 129 | GL14593-PA | 1..114 | 1..113 | 235 | 43 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18774-PA | 137 | GA18774-PA | 1..137 | 1..141 | 553 | 78 | Plus |
Dpse\GA26184-PA | 127 | GA26184-PA | 1..126 | 1..125 | 273 | 44.4 | Plus |
Dpse\GA24125-PA | 127 | GA24125-PA | 1..126 | 1..125 | 273 | 44.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24271-PA | 141 | GM24271-PA | 1..141 | 1..141 | 707 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19059-PA | 141 | GD19059-PA | 1..141 | 1..141 | 718 | 97.9 | Plus |
Dsim\GD16862-PA | 150 | GD16862-PA | 1..117 | 1..116 | 327 | 55.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23769-PA | 139 | GJ23769-PA | 1..139 | 1..141 | 554 | 76.6 | Plus |
Dvir\GJ15903-PA | 135 | GJ15903-PA | 1..131 | 1..131 | 324 | 51.9 | Plus |
Translation from 221 to 646
> RE11908.hyp MAKYIAQIIVLGAQAVGRAFTKALRQEIAASQEAARRAGGGKQGDKSAES NLRTGMTLEEAKQILNIDDPKNVDAITKNYEHLFQVNERSKGGSFYIQSK VFRAKERLDHEIKAHEQPRSSNTEAAQDTAEESQSRSRQRR*