BDGP Sequence Production Resources |
Search the DGRC for RE12030
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 120 |
Well: | 30 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG33145-RA |
Protein status: | RE12030.pep: gold |
Preliminary Size: | 3771 |
Sequenced Size: | 2262 |
Gene | Date | Evidence |
---|---|---|
CG33145 | 2001-12-14 | Blastp of sequenced clone |
CG8976 | 2002-01-01 | Sim4 clustering to Release 2 |
CG33145 | 2003-01-01 | Sim4 clustering to Release 3 |
CG33145 | 2008-04-29 | Release 5.5 accounting |
CG33145 | 2008-08-15 | Release 5.9 accounting |
CG33145 | 2008-12-18 | 5.12 accounting |
2262 bp (2262 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071036
> RE12030.complete ACGGGCATTTTTACTATCAGCTGTGCTGAACAATCCCATTCGCTGTTTTT ATCAATTTGGATAAAATTCTTGTTATTCAGTTATTACCATAAAAAGTATT AGATGTCAATAACAGGAGTGGGCGATTAAATCAACCCAATTCAGCTAGGC GCCCTAATAGTTGATAAAATGCGAACAGTGCATTAAATTGTAGGCGGAGG ACCAGTGGCGATAAGTGAATCCAGTCACATGGACAGAAGGTGGAATCCAG AAAAAATCGAGGAGCAGAGCTCCCTCTTGGCAGCGGAATATTCCTCCAGC TCGGGAGCAGCTGCTTCCGGATCCGAGGACGAGACGGTCACCACTAGTGG AGCGCTACGCAGCAAAGCAAAGCTGAGGAAGCGGCAGCTAAGAAATCGCA TGCCGCTTCCCAGGATGTTAAGACGCCTTGGCTGCTACACGCTGAGCGCC TTCCTAATCTGTGGGCTGCTCCTCGTCTACCTGCCGCTCGTCTACTTGGA TGTACACAAGCGTAGTGCTGGTCTGCCGGATTGGACGTCAGAGACCTCCC GCAGCATAGCTGACTACCTGGATATCGGGCTCAGTTCTGGCGTCATTGTT CCCAAGGACTTTTGCCGGAATAAGACCTTCCTGGTAATCGCCGTATGCAC CGGCGTGGACAACTTCATTCAGCGACATACCATCCGTGAGACCTGGGGCA ATACCACCGAGTTCAACTACCCAGCGTTTGGAAAGCTCCATGGTCATCTC AAGGGTCACTACCTGCCGCCACTGCCGGATCGCTTAAAGATGTACGGGGA TTATTTGAGCGGCGAGGGGCAGTCTCTGACTGCCTCAGTGCGCATTGTTT TCATTGTAGGCCGCCAGAAAGATGAGGCCATGTTGGGCAATGAGACCCTG AATCGCATTCACATTGAATCGGAAAAGTACAACGACATCATTCAGGAGAA CTTCGTGGATAGCTACAACAACCTGACGCTTAAGTCTGTGATGGCTCTAA AGCACATTAGCCGCAGTTGCTTTAATACCGCGGTCTACTTCCTCAAGTGC GACGACGATACCTTCATTACCACGACCGGTCCACCTATTTAGTCACTGCA CCGCAAACCCGATTGAAAGCCAGCAGCGATGTGTTGTACGGCCATCAGTT TTGCAACGTGGTGCCGGTTAGCGAAGTAAGCAGCAAGTGGTACATGCCCT CATACATGTATAAGCCGGAGTCGTATCCAAAGTATCTTTCCGGAGCCGGC TATCTCATGTCCATCGATGTAGTGCAGCGCTTGTTCGAGGCTTCGCTTAA TACGACGCTGGTCTATCTGGAGGACGTGTACATCACTGGGTTGTGTGCAC AAAAAGCTAAGATCAATCGACACCACCACCCGCTCTTCAGCTTCGCCCAC TCGAAACAGATGTGCGCTTTCAAGGGCACCATCACACAGCATCAGTTAAA AGACGATAGCATGGTATCCGCCTGGAACTACGTGTCCAACTACTCCATCA AATGTCCGCCTCCTGGGCGGTACTTTAGCCAGGTGCGACTGCGCAAGCGG CCTATCTGTTAGATGTCCTAACCTAGAACTTCACGGTAAATTTATCCACT ACCCCTTCCCATTTCTCCTGCTCTCTGGATAAAAACCGATATACTATATG TTTAAAGCTTCGGCATAGATTTTTGACATTCAGTTCCTATAATTTCTTGC GGACCACATTGGGATAAAATGTAATCAACTTGAATTGAACAGTGATAATT AATCCTAAAAAGGTCATACATACAATGATTTTGATTTCATATTAGTTTAT GACGATAACTTCGCTTGTCAAGGCATGTATATACAATTTTAGATGGCCTA GCACTCTCAATACTCCATATCAATGTTAAAAGTAATGCACGAGCTAAATA TCTCATAAATCCATATTCTTATAATCTTAAGAAATTATTTAACGACATAG TGTTTATAATAGAAGAGAAAGTATTTATTTTTGGACATGACTCGCCACAT ATATGTATCCTTATTTACCATATGCTGTAAATTAGTTTTTAGTTGGCACA CATCATCACTATCTTTTCTCTTCTAAACTAAAACTATCAACTATCTATTG AATTGACGCACAGCAGTGTTCTTTAATAAGAAACCATTTTCTTAATTTAT GATACGTTATAGAACTATATTAATTTAATATGAAAGATTGCCAAATAAAC AAATTGTTTCTGTTCAAAAGAGCGAATAAATTTTAAAACCAGTCCCAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG33145-RA | 2244 | CG33145-RA | 4..2244 | 1..2241 | 11205 | 100 | Plus |
CG33145-RB | 2325 | CG33145-RB | 1136..2323 | 1066..2253 | 5910 | 99.8 | Plus |
CG33145-RB | 2325 | CG33145-RB | 4..1068 | 1..1065 | 5325 | 100 | Plus |
CG30036-RA | 1431 | CG30036-RA | 538..627 | 931..1020 | 255 | 85.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7867794..7868973 | 2245..1066 | 5700 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 7869041..7869589 | 1065..517 | 2715 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 7869653..7870169 | 517..1 | 2555 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 7865509..7865642 | 1064..931 | 280 | 80.6 | Minus |
chr2R | 21145070 | chr2R | 7866948..7867074 | 1069..943 | 185 | 76.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 11980569..11981756 | 2253..1066 | 5910 | 99.8 | Minus |
2R | 25286936 | 2R | 11981824..11982372 | 1065..517 | 2745 | 100 | Minus |
2R | 25286936 | 2R | 11982436..11982952 | 517..1 | 2585 | 100 | Minus |
2R | 25286936 | 2R | 11978293..11978426 | 1064..931 | 280 | 80.6 | Minus |
2R | 25286936 | 2R | 11979731..11979857 | 1069..943 | 185 | 76.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 11981768..11982955 | 2253..1066 | 5910 | 99.8 | Minus |
2R | 25260384 | 2R | 11983023..11983571 | 1065..517 | 2745 | 100 | Minus |
2R | 25260384 | 2R | 11983635..11984151 | 517..1 | 2585 | 100 | Minus |
2R | 25260384 | 2R | 11979536..11979625 | 1020..931 | 255 | 85.5 | Minus |
2R | 25260384 | 2R | 11980995..11981056 | 1004..943 | 160 | 83.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2023..2084 | 2214..2152 | 123 | 70.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7867793..7868973 | 1066..2246 | 99 | <- | Minus |
chr2R | 7869041..7869588 | 518..1065 | 99 | <- | Minus |
chr2R | 7869653..7870169 | 1..517 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33145-RA | 1..864 | 229..1092 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33145-RA | 1..864 | 229..1092 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33145-RA | 1..864 | 229..1092 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33145-RA | 1..864 | 229..1092 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33145-RA | 1..864 | 229..1092 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33145-RA | 1..2241 | 1..2241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33145-RA | 1..2241 | 1..2241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33145-RA | 5..2249 | 1..2245 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33145-RA | 1..2241 | 1..2241 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG33145-RA | 5..2249 | 1..2245 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11980576..11981756 | 1066..2246 | 99 | <- | Minus |
2R | 11981824..11982371 | 518..1065 | 100 | <- | Minus |
2R | 11982436..11982952 | 1..517 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11980576..11981756 | 1066..2246 | 99 | <- | Minus |
2R | 11981824..11982371 | 518..1065 | 100 | <- | Minus |
2R | 11982436..11982952 | 1..517 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11980576..11981756 | 1066..2246 | 99 | <- | Minus |
2R | 11981824..11982371 | 518..1065 | 100 | <- | Minus |
2R | 11982436..11982952 | 1..517 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7868081..7869261 | 1066..2246 | 99 | <- | Minus |
arm_2R | 7869329..7869876 | 518..1065 | 100 | <- | Minus |
arm_2R | 7869941..7870457 | 1..517 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11981775..11982955 | 1066..2246 | 99 | <- | Minus |
2R | 11983023..11983570 | 518..1065 | 100 | <- | Minus |
2R | 11983635..11984151 | 1..517 | 100 | Minus |
Translation from 228 to 1091
> RE12030.hyp MDRRWNPEKIEEQSSLLAAEYSSSSGAAASGSEDETVTTSGALRSKAKLR KRQLRNRMPLPRMLRRLGCYTLSAFLICGLLLVYLPLVYLDVHKRSAGLP DWTSETSRSIADYLDIGLSSGVIVPKDFCRNKTFLVIAVCTGVDNFIQRH TIRETWGNTTEFNYPAFGKLHGHLKGHYLPPLPDRLKMYGDYLSGEGQSL TASVRIVFIVGRQKDEAMLGNETLNRIHIESEKYNDIIQENFVDSYNNLT LKSVMALKHISRSCFNTAVYFLKCDDDTFITTTGPPI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG33145-PA | 287 | CG33145-PA | 1..287 | 1..287 | 1499 | 100 | Plus |
CG33145-PB | 466 | CG33145-PB | 1..280 | 1..280 | 1459 | 99.6 | Plus |
CG30036-PA | 388 | CG30036-PA | 4..202 | 80..280 | 601 | 58.9 | Plus |
CG30037-PA | 420 | CG30037-PA | 28..232 | 74..280 | 598 | 54.3 | Plus |
Translation from 228 to 1091
> RE12030.pep MDRRWNPEKIEEQSSLLAAEYSSSSGAAASGSEDETVTTSGALRSKAKLR KRQLRNRMPLPRMLRRLGCYTLSAFLICGLLLVYLPLVYLDVHKRSAGLP DWTSETSRSIADYLDIGLSSGVIVPKDFCRNKTFLVIAVCTGVDNFIQRH TIRETWGNTTEFNYPAFGKLHGHLKGHYLPPLPDRLKMYGDYLSGEGQSL TASVRIVFIVGRQKDEAMLGNETLNRIHIESEKYNDIIQENFVDSYNNLT LKSVMALKHISRSCFNTAVYFLKCDDDTFITTTGPPI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11797-PA | 459 | GF11797-PA | 1..273 | 1..280 | 953 | 66 | Plus |
Dana\GF19917-PA | 338 | GF19917-PA | 1..182 | 101..282 | 521 | 50 | Plus |
Dana\GF15701-PA | 391 | GF15701-PA | 1..186 | 90..280 | 518 | 49.2 | Plus |
Dana\GF17392-PA | 366 | GF17392-PA | 21..197 | 102..280 | 472 | 49.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22617-PA | 466 | GG22617-PA | 1..280 | 1..280 | 1254 | 85.4 | Plus |
Dere\GG22618-PA | 420 | GG22618-PA | 12..234 | 60..282 | 621 | 54.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20401-PA | 462 | GH20401-PA | 12..278 | 11..282 | 810 | 59.6 | Plus |
Dgri\GH11617-PA | 614 | GH11617-PA | 401..471 | 204..280 | 151 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GalT1-PA | 287 | CG33145-PA | 1..287 | 1..287 | 1499 | 100 | Plus |
GalT1-PB | 466 | CG33145-PB | 1..280 | 1..280 | 1459 | 99.6 | Plus |
CG30036-PA | 388 | CG30036-PA | 4..202 | 80..280 | 601 | 58.9 | Plus |
CG30037-PA | 420 | CG30037-PA | 28..232 | 74..280 | 598 | 54.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19588-PA | 452 | GI19588-PA | 22..266 | 32..280 | 786 | 57.8 | Plus |
Dmoj\GI23623-PA | 347 | GI23623-PA | 2..187 | 62..282 | 151 | 27.3 | Plus |
Dmoj\GI17920-PA | 607 | GI17920-PA | 391..461 | 204..280 | 148 | 42.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20025-PA | 462 | GL20025-PA | 9..276 | 11..280 | 888 | 66.7 | Plus |
Dper\GL24467-PA | 370 | GL24467-PA | 4..201 | 83..280 | 600 | 53.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17319-PA | 462 | GA17319-PA | 9..276 | 11..280 | 891 | 67 | Plus |
Dpse\GA26620-PA | 370 | GA26620-PA | 4..201 | 83..280 | 600 | 53.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20396-PA | 466 | GM20396-PA | 1..282 | 1..282 | 1274 | 91.8 | Plus |
Dsec\GM20397-PA | 420 | GM20397-PA | 28..234 | 74..282 | 624 | 55.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25871-PA | 466 | GD25871-PA | 1..280 | 1..280 | 1271 | 91.8 | Plus |
Dsim\GD25872-PA | 420 | GD25872-PA | 28..234 | 74..282 | 622 | 55.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18347-PA | 476 | GJ18347-PA | 10..292 | 9..282 | 814 | 55.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22248-PA | 463 | GK22248-PA | 13..277 | 11..280 | 754 | 60.4 | Plus |