Clone RE12030 Report

Search the DGRC for RE12030

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:120
Well:30
Vector:pFlc-1
Associated Gene/TranscriptCG33145-RA
Protein status:RE12030.pep: gold
Preliminary Size:3771
Sequenced Size:2262

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33145 2001-12-14 Blastp of sequenced clone
CG8976 2002-01-01 Sim4 clustering to Release 2
CG33145 2003-01-01 Sim4 clustering to Release 3
CG33145 2008-04-29 Release 5.5 accounting
CG33145 2008-08-15 Release 5.9 accounting
CG33145 2008-12-18 5.12 accounting

Clone Sequence Records

RE12030.complete Sequence

2262 bp (2262 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071036

> RE12030.complete
ACGGGCATTTTTACTATCAGCTGTGCTGAACAATCCCATTCGCTGTTTTT
ATCAATTTGGATAAAATTCTTGTTATTCAGTTATTACCATAAAAAGTATT
AGATGTCAATAACAGGAGTGGGCGATTAAATCAACCCAATTCAGCTAGGC
GCCCTAATAGTTGATAAAATGCGAACAGTGCATTAAATTGTAGGCGGAGG
ACCAGTGGCGATAAGTGAATCCAGTCACATGGACAGAAGGTGGAATCCAG
AAAAAATCGAGGAGCAGAGCTCCCTCTTGGCAGCGGAATATTCCTCCAGC
TCGGGAGCAGCTGCTTCCGGATCCGAGGACGAGACGGTCACCACTAGTGG
AGCGCTACGCAGCAAAGCAAAGCTGAGGAAGCGGCAGCTAAGAAATCGCA
TGCCGCTTCCCAGGATGTTAAGACGCCTTGGCTGCTACACGCTGAGCGCC
TTCCTAATCTGTGGGCTGCTCCTCGTCTACCTGCCGCTCGTCTACTTGGA
TGTACACAAGCGTAGTGCTGGTCTGCCGGATTGGACGTCAGAGACCTCCC
GCAGCATAGCTGACTACCTGGATATCGGGCTCAGTTCTGGCGTCATTGTT
CCCAAGGACTTTTGCCGGAATAAGACCTTCCTGGTAATCGCCGTATGCAC
CGGCGTGGACAACTTCATTCAGCGACATACCATCCGTGAGACCTGGGGCA
ATACCACCGAGTTCAACTACCCAGCGTTTGGAAAGCTCCATGGTCATCTC
AAGGGTCACTACCTGCCGCCACTGCCGGATCGCTTAAAGATGTACGGGGA
TTATTTGAGCGGCGAGGGGCAGTCTCTGACTGCCTCAGTGCGCATTGTTT
TCATTGTAGGCCGCCAGAAAGATGAGGCCATGTTGGGCAATGAGACCCTG
AATCGCATTCACATTGAATCGGAAAAGTACAACGACATCATTCAGGAGAA
CTTCGTGGATAGCTACAACAACCTGACGCTTAAGTCTGTGATGGCTCTAA
AGCACATTAGCCGCAGTTGCTTTAATACCGCGGTCTACTTCCTCAAGTGC
GACGACGATACCTTCATTACCACGACCGGTCCACCTATTTAGTCACTGCA
CCGCAAACCCGATTGAAAGCCAGCAGCGATGTGTTGTACGGCCATCAGTT
TTGCAACGTGGTGCCGGTTAGCGAAGTAAGCAGCAAGTGGTACATGCCCT
CATACATGTATAAGCCGGAGTCGTATCCAAAGTATCTTTCCGGAGCCGGC
TATCTCATGTCCATCGATGTAGTGCAGCGCTTGTTCGAGGCTTCGCTTAA
TACGACGCTGGTCTATCTGGAGGACGTGTACATCACTGGGTTGTGTGCAC
AAAAAGCTAAGATCAATCGACACCACCACCCGCTCTTCAGCTTCGCCCAC
TCGAAACAGATGTGCGCTTTCAAGGGCACCATCACACAGCATCAGTTAAA
AGACGATAGCATGGTATCCGCCTGGAACTACGTGTCCAACTACTCCATCA
AATGTCCGCCTCCTGGGCGGTACTTTAGCCAGGTGCGACTGCGCAAGCGG
CCTATCTGTTAGATGTCCTAACCTAGAACTTCACGGTAAATTTATCCACT
ACCCCTTCCCATTTCTCCTGCTCTCTGGATAAAAACCGATATACTATATG
TTTAAAGCTTCGGCATAGATTTTTGACATTCAGTTCCTATAATTTCTTGC
GGACCACATTGGGATAAAATGTAATCAACTTGAATTGAACAGTGATAATT
AATCCTAAAAAGGTCATACATACAATGATTTTGATTTCATATTAGTTTAT
GACGATAACTTCGCTTGTCAAGGCATGTATATACAATTTTAGATGGCCTA
GCACTCTCAATACTCCATATCAATGTTAAAAGTAATGCACGAGCTAAATA
TCTCATAAATCCATATTCTTATAATCTTAAGAAATTATTTAACGACATAG
TGTTTATAATAGAAGAGAAAGTATTTATTTTTGGACATGACTCGCCACAT
ATATGTATCCTTATTTACCATATGCTGTAAATTAGTTTTTAGTTGGCACA
CATCATCACTATCTTTTCTCTTCTAAACTAAAACTATCAACTATCTATTG
AATTGACGCACAGCAGTGTTCTTTAATAAGAAACCATTTTCTTAATTTAT
GATACGTTATAGAACTATATTAATTTAATATGAAAGATTGCCAAATAAAC
AAATTGTTTCTGTTCAAAAGAGCGAATAAATTTTAAAACCAGTCCCAAAA
AAAAAAAAAAAA

RE12030.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG33145-RA 2244 CG33145-RA 4..2244 1..2241 11205 100 Plus
CG33145-RB 2325 CG33145-RB 1136..2323 1066..2253 5910 99.8 Plus
CG33145-RB 2325 CG33145-RB 4..1068 1..1065 5325 100 Plus
CG30036-RA 1431 CG30036-RA 538..627 931..1020 255 85.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7867794..7868973 2245..1066 5700 99.2 Minus
chr2R 21145070 chr2R 7869041..7869589 1065..517 2715 99.6 Minus
chr2R 21145070 chr2R 7869653..7870169 517..1 2555 99.6 Minus
chr2R 21145070 chr2R 7865509..7865642 1064..931 280 80.6 Minus
chr2R 21145070 chr2R 7866948..7867074 1069..943 185 76.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:34:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11980569..11981756 2253..1066 5910 99.8 Minus
2R 25286936 2R 11981824..11982372 1065..517 2745 100 Minus
2R 25286936 2R 11982436..11982952 517..1 2585 100 Minus
2R 25286936 2R 11978293..11978426 1064..931 280 80.6 Minus
2R 25286936 2R 11979731..11979857 1069..943 185 76.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11981768..11982955 2253..1066 5910 99.8 Minus
2R 25260384 2R 11983023..11983571 1065..517 2745 100 Minus
2R 25260384 2R 11983635..11984151 517..1 2585 100 Minus
2R 25260384 2R 11979536..11979625 1020..931 255 85.5 Minus
2R 25260384 2R 11980995..11981056 1004..943 160 83.8 Minus
Blast to na_te.dros performed 2019-03-15 19:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 2023..2084 2214..2152 123 70.3 Minus

RE12030.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:32:58 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7867793..7868973 1066..2246 99 <- Minus
chr2R 7869041..7869588 518..1065 99 <- Minus
chr2R 7869653..7870169 1..517 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:54:29 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 1..864 229..1092 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:11:58 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 1..864 229..1092 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:53:13 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 1..864 229..1092 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:36:11 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 1..864 229..1092 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:19:45 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 1..864 229..1092 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:42:29 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 1..2241 1..2241 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:11:58 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 1..2241 1..2241 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:53:13 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 5..2249 1..2245 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:36:12 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 1..2241 1..2241 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:19:45 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 5..2249 1..2245 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:32:58 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11980576..11981756 1066..2246 99 <- Minus
2R 11981824..11982371 518..1065 100 <- Minus
2R 11982436..11982952 1..517 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:32:58 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11980576..11981756 1066..2246 99 <- Minus
2R 11981824..11982371 518..1065 100 <- Minus
2R 11982436..11982952 1..517 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:32:58 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11980576..11981756 1066..2246 99 <- Minus
2R 11981824..11982371 518..1065 100 <- Minus
2R 11982436..11982952 1..517 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:53:13 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7868081..7869261 1066..2246 99 <- Minus
arm_2R 7869329..7869876 518..1065 100 <- Minus
arm_2R 7869941..7870457 1..517 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:13:35 Download gff for RE12030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11981775..11982955 1066..2246 99 <- Minus
2R 11983023..11983570 518..1065 100 <- Minus
2R 11983635..11984151 1..517 100   Minus

RE12030.hyp Sequence

Translation from 228 to 1091

> RE12030.hyp
MDRRWNPEKIEEQSSLLAAEYSSSSGAAASGSEDETVTTSGALRSKAKLR
KRQLRNRMPLPRMLRRLGCYTLSAFLICGLLLVYLPLVYLDVHKRSAGLP
DWTSETSRSIADYLDIGLSSGVIVPKDFCRNKTFLVIAVCTGVDNFIQRH
TIRETWGNTTEFNYPAFGKLHGHLKGHYLPPLPDRLKMYGDYLSGEGQSL
TASVRIVFIVGRQKDEAMLGNETLNRIHIESEKYNDIIQENFVDSYNNLT
LKSVMALKHISRSCFNTAVYFLKCDDDTFITTTGPPI*

RE12030.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG33145-PA 287 CG33145-PA 1..287 1..287 1499 100 Plus
CG33145-PB 466 CG33145-PB 1..280 1..280 1459 99.6 Plus
CG30036-PA 388 CG30036-PA 4..202 80..280 601 58.9 Plus
CG30037-PA 420 CG30037-PA 28..232 74..280 598 54.3 Plus

RE12030.pep Sequence

Translation from 228 to 1091

> RE12030.pep
MDRRWNPEKIEEQSSLLAAEYSSSSGAAASGSEDETVTTSGALRSKAKLR
KRQLRNRMPLPRMLRRLGCYTLSAFLICGLLLVYLPLVYLDVHKRSAGLP
DWTSETSRSIADYLDIGLSSGVIVPKDFCRNKTFLVIAVCTGVDNFIQRH
TIRETWGNTTEFNYPAFGKLHGHLKGHYLPPLPDRLKMYGDYLSGEGQSL
TASVRIVFIVGRQKDEAMLGNETLNRIHIESEKYNDIIQENFVDSYNNLT
LKSVMALKHISRSCFNTAVYFLKCDDDTFITTTGPPI*

RE12030.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11797-PA 459 GF11797-PA 1..273 1..280 953 66 Plus
Dana\GF19917-PA 338 GF19917-PA 1..182 101..282 521 50 Plus
Dana\GF15701-PA 391 GF15701-PA 1..186 90..280 518 49.2 Plus
Dana\GF17392-PA 366 GF17392-PA 21..197 102..280 472 49.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22617-PA 466 GG22617-PA 1..280 1..280 1254 85.4 Plus
Dere\GG22618-PA 420 GG22618-PA 12..234 60..282 621 54.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20401-PA 462 GH20401-PA 12..278 11..282 810 59.6 Plus
Dgri\GH11617-PA 614 GH11617-PA 401..471 204..280 151 44.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
GalT1-PA 287 CG33145-PA 1..287 1..287 1499 100 Plus
GalT1-PB 466 CG33145-PB 1..280 1..280 1459 99.6 Plus
CG30036-PA 388 CG30036-PA 4..202 80..280 601 58.9 Plus
CG30037-PA 420 CG30037-PA 28..232 74..280 598 54.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19588-PA 452 GI19588-PA 22..266 32..280 786 57.8 Plus
Dmoj\GI23623-PA 347 GI23623-PA 2..187 62..282 151 27.3 Plus
Dmoj\GI17920-PA 607 GI17920-PA 391..461 204..280 148 42.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20025-PA 462 GL20025-PA 9..276 11..280 888 66.7 Plus
Dper\GL24467-PA 370 GL24467-PA 4..201 83..280 600 53.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17319-PA 462 GA17319-PA 9..276 11..280 891 67 Plus
Dpse\GA26620-PA 370 GA26620-PA 4..201 83..280 600 53.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20396-PA 466 GM20396-PA 1..282 1..282 1274 91.8 Plus
Dsec\GM20397-PA 420 GM20397-PA 28..234 74..282 624 55.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25871-PA 466 GD25871-PA 1..280 1..280 1271 91.8 Plus
Dsim\GD25872-PA 420 GD25872-PA 28..234 74..282 622 55.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18347-PA 476 GJ18347-PA 10..292 9..282 814 55.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22248-PA 463 GK22248-PA 13..277 11..280 754 60.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13486-PA 466 GE13486-PA 1..280 1..280 1240 85.4 Plus
Dyak\GE13487-PA 420 GE13487-PA 28..234 74..282 614 56.2 Plus