BDGP Sequence Production Resources |
Search the DGRC for RE12073
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 120 |
Well: | 73 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12360-RA |
Protein status: | RE12073.pep: gold |
Preliminary Size: | 1921 |
Sequenced Size: | 2164 |
Gene | Date | Evidence |
---|---|---|
CG12360 | 2001-12-12 | Blastp of sequenced clone |
CG12360 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12360 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12360 | 2008-04-29 | Release 5.5 accounting |
CG12360 | 2008-08-15 | Release 5.9 accounting |
CG12360 | 2008-12-18 | 5.12 accounting |
2164 bp (2164 high quality bases) assembled on 2001-12-12
GenBank Submission: AY070575
> RE12073.complete GCATTTTAAGCATTAGGCAACACTGGTCGACGCTAGCAAGAAGAATTTAA TCACAATTTAATTTCTTTAGTTCTTTGGGTTTTTATTTAAATTAAGAGCA CGCATTGAATCAAAAACGTAATCAGCGCCAATCAAATTGAGTTTTCAATC AGCAGACAGTCGTCAATTAAGGCCTCTGCCAATGTGCCCCAAACATCCAG CAGTGCAACAACACCCACACTAAACACAAATTTTCAGTTCTTCGCCAGAT GTTTAAACGTCGCCTCGCCAGCAACCGAAACCGAATTTCCACTAGCAACC GATTCTTCCAGGCCTCCAACTGACCCAACTGAACACGACCATGGACGTAT CCGCCTCCACGTCGTTTGAATCCTCGCCGGACAAGAGAAACAGCATCTAT GTGGGCGACAACACTTTCTACGACAGCGCCCTGGATCACCAGCTGTCCAC CACGGCCTACAAGTCGTGCAATGAGAGCCTTATCAGCGAACTCAGCCAGA ATCCTCTTGGCCCCTCGAACTCGGCCAACAAGACAGCTAGTGCGGAATTT GGCAATGAATCCGCTGCATTCAAGCCCCTCGGATCCCCGGCAGCTTTCAA CAATGCCACGCCAGCGCTAAATGCCAGCATGCTGCTGATTCAGTCGGAGA GCACGGACACTAATACCTCGCAGGAGGAGGTGGACCCCAAGTCACAACTG GCCAACAAGACAATATTCAAGACGGATAATCCCAACCTGTCAATTATAGA AATTAACGATAACTCGATTAAGGAGGAGGACCTCGAGAAGGTGGTGCTGG TCGAGGGCGACAGTGTGAAGAATCTTTTGAAGAAGTCGCCCAGCAAGGAG GCTTCGGCAAACGCTGACAAAAGACGCCGCAAGGAATCCCTACTGCACAC GAGCAAACAAAAATTGGACATTTCCATCGCTGAAGCTTCGGCAGCCGCCG ATGGTGATGGCGAGAAGCGGGATCTGGTGTCGGTCATAGATCAGCCGCAG ACCAAGCGCGAAATCACAATTTACGATACCATTGAGGAGTTCGAACAGAA TCTGCCGTCGACGGTGACGCTGTTGAACACGCCCTTCGGCAGCAAGGTAT ATCTTGTGGGCACGGCCCACTTCAGCGAGGAGTCGCAGGATGACGTCTCT TATGTCATTCGCAATGTCCGTCCAGATGTGGTAATGGTGGAGTTGTGTCC ATCGCGCATACACATCCTTAAGCTCGATGAAAAGACCCTGCTGGAGGAAG CCAAAAGCATCAATATTCCCAAGATTCGAGGAATCCTGCACACGCACGGC TACATCAATGGCATCTTTTTCATCCTACTGCTGCAGATGAGCGCTCAGAT CGCCAAGGACCTGGGCATGGCGCCCGGTGGCGAATTTCGCCGTGCCTTCG AGGAGATTCACAAGCTGCCCGGTTGCATCTTACATCTAGGCGATCGCCCA ATCCGCATCACACTTTACCGCGCTCTGCGCGCTTTGTCCATGTGGCAGAC CATGAAACTGGTGTGGCGTCTTACCTTCACGGACAGCATCAGCATTGAGG AGGTAGAGGAGTGCAAGCAGAGCGATCTGTTAGAGAAGCTGATGCAGGAG ATGGCCGGCGAGTTTCCTGCCTTTTCGGATGTGTTTGTGCGCGAGCGCGA CGTTTTCCTATGCCACTCTCTGCAACTGGCTGCGCTGCCTCAGGCGGCTC CAGGTGGCCAACAGGTCCGTCCGGTACGTGTGGTCGGAGTGGTGGGCATC GGACACGCCAACGGAATTGCCAAGATGTGGGGCACCGTCGATCCGAAGAA GATTCCGGCCATTCTCGAAATACCGCCGGCCAGCCTGGGACAACGCGTCT GCAAGTACACCCTGAAGTACGGCCTAATTGGCCTCGGATGCTACGGTGCC TTTCGTTTCTTCCGGCCCCGCCTGACCCGCTTATTTTAGATGGACCAAGT ATGAGGCGACTGTGTACACTGTGTCTGCTATGTTAATGATTTTGTTATTA GTGACTAACGAATCCCTGCGCTGATTTACCATTTTGGAGTGCGCTGCTGA AGCGAATTAGTTTTATTTTTCAATGATGTTTTGATAGACTCGTTTATATA CGAAATATATCCATGGATGTATATACATACAAACCAAACAGGAAAGACCA AAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 8852310..8853194 | 2149..1272 | 4255 | 99 | Minus |
chr3R | 27901430 | chr3R | 8853429..8854111 | 1155..473 | 3415 | 100 | Minus |
chr3R | 27901430 | chr3R | 8855145..8855383 | 473..235 | 1195 | 100 | Minus |
chr3R | 27901430 | chr3R | 8855640..8855876 | 237..1 | 1155 | 99.2 | Minus |
chr3R | 27901430 | chr3R | 8853253..8853372 | 1273..1154 | 600 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 13027090..13027968 | 2150..1272 | 4395 | 100 | Minus |
3R | 32079331 | 3R | 13028203..13028885 | 1155..473 | 3415 | 100 | Minus |
3R | 32079331 | 3R | 13029919..13030157 | 473..235 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 13030414..13030650 | 237..1 | 1170 | 99.6 | Minus |
3R | 32079331 | 3R | 13028027..13028146 | 1273..1154 | 600 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 12767921..12768799 | 2150..1272 | 4395 | 100 | Minus |
3R | 31820162 | 3R | 12769034..12769716 | 1155..473 | 3415 | 100 | Minus |
3R | 31820162 | 3R | 12770750..12770988 | 473..235 | 1195 | 100 | Minus |
3R | 31820162 | 3R | 12771245..12771481 | 237..1 | 1170 | 99.5 | Minus |
3R | 31820162 | 3R | 12768858..12768977 | 1273..1154 | 600 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 8853253..8853372 | 1154..1273 | 100 | <- | Minus |
chr3R | 8855640..8855876 | 1..237 | 99 | Minus | |
chr3R | 8852310..8853192 | 1274..2149 | 98 | <- | Minus |
chr3R | 8853431..8854110 | 474..1153 | 100 | <- | Minus |
chr3R | 8855145..8855380 | 238..473 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12360-RB | 1..1599 | 341..1939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12360-RB | 1..1599 | 341..1939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12360-RA | 1..1599 | 341..1939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12360-RB | 1..1599 | 341..1939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12360-RA | 1..1599 | 341..1939 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12360-RA | 1..2149 | 1..2149 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12360-RA | 1..2149 | 1..2149 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12360-RA | 10..2158 | 1..2149 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12360-RA | 1..2149 | 1..2149 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12360-RA | 10..2158 | 1..2149 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13027091..13027966 | 1274..2149 | 100 | <- | Minus |
3R | 13028027..13028146 | 1154..1273 | 100 | <- | Minus |
3R | 13028205..13028884 | 474..1153 | 100 | <- | Minus |
3R | 13029919..13030154 | 238..473 | 100 | <- | Minus |
3R | 13030414..13030650 | 1..237 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13027091..13027966 | 1274..2149 | 100 | <- | Minus |
3R | 13028027..13028146 | 1154..1273 | 100 | <- | Minus |
3R | 13028205..13028884 | 474..1153 | 100 | <- | Minus |
3R | 13029919..13030154 | 238..473 | 100 | <- | Minus |
3R | 13030414..13030650 | 1..237 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13027091..13027966 | 1274..2149 | 100 | <- | Minus |
3R | 13028027..13028146 | 1154..1273 | 100 | <- | Minus |
3R | 13028205..13028884 | 474..1153 | 100 | <- | Minus |
3R | 13029919..13030154 | 238..473 | 100 | <- | Minus |
3R | 13030414..13030650 | 1..237 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 8852813..8853688 | 1274..2149 | 100 | <- | Minus |
arm_3R | 8853749..8853868 | 1154..1273 | 100 | <- | Minus |
arm_3R | 8853927..8854606 | 474..1153 | 100 | <- | Minus |
arm_3R | 8855641..8855876 | 238..473 | 100 | <- | Minus |
arm_3R | 8856136..8856372 | 1..237 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12767922..12768797 | 1274..2149 | 100 | <- | Minus |
3R | 12768858..12768977 | 1154..1273 | 100 | <- | Minus |
3R | 12769036..12769715 | 474..1153 | 100 | <- | Minus |
3R | 12770750..12770985 | 238..473 | 100 | <- | Minus |
3R | 12771245..12771481 | 1..237 | 99 | Minus |
Translation from 340 to 1938
> RE12073.pep MDVSASTSFESSPDKRNSIYVGDNTFYDSALDHQLSTTAYKSCNESLISE LSQNPLGPSNSANKTASAEFGNESAAFKPLGSPAAFNNATPALNASMLLI QSESTDTNTSQEEVDPKSQLANKTIFKTDNPNLSIIEINDNSIKEEDLEK VVLVEGDSVKNLLKKSPSKEASANADKRRRKESLLHTSKQKLDISIAEAS AAADGDGEKRDLVSVIDQPQTKREITIYDTIEEFEQNLPSTVTLLNTPFG SKVYLVGTAHFSEESQDDVSYVIRNVRPDVVMVELCPSRIHILKLDEKTL LEEAKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGMAPGGEFR RAFEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMKLVWRLTFTDSI SIEEVEECKQSDLLEKLMQEMAGEFPAFSDVFVRERDVFLCHSLQLAALP QAAPGGQQVRPVRVVGVVGIGHANGIAKMWGTVDPKKIPAILEIPPASLG QRVCKYTLKYGLIGLGCYGAFRFFRPRLTRLF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18088-PA | 541 | GF18088-PA | 1..541 | 1..532 | 2360 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17082-PA | 532 | GG17082-PA | 1..532 | 1..532 | 2757 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19196-PA | 563 | GH19196-PA | 14..563 | 11..532 | 2085 | 77.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG46280-PB | 532 | CG46280-PB | 1..532 | 1..532 | 2705 | 100 | Plus |
CG46280-PA | 532 | CG46280-PA | 1..532 | 1..532 | 2705 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24230-PA | 568 | GI24230-PA | 1..568 | 1..532 | 2106 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23149-PA | 954 | GL23149-PA | 432..954 | 19..532 | 2025 | 79.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27162-PB | 545 | GA27162-PB | 19..545 | 14..532 | 2096 | 82 | Plus |
Dpse\GA27159-PE | 545 | GA27159-PE | 19..545 | 14..532 | 2085 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25964-PA | 532 | GM25964-PA | 1..532 | 1..532 | 2800 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20525-PA | 532 | GD20525-PA | 1..532 | 1..532 | 2799 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10803-PA | 567 | GJ10803-PA | 1..567 | 1..532 | 2111 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10854-PA | 549 | GK10854-PA | 1..549 | 1..532 | 2027 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24471-PA | 532 | GE24471-PA | 1..532 | 1..532 | 2781 | 97.6 | Plus |
Translation from 340 to 1938
> RE12073.hyp MDVSASTSFESSPDKRNSIYVGDNTFYDSALDHQLSTTAYKSCNESLISE LSQNPLGPSNSANKTASAEFGNESAAFKPLGSPAAFNNATPALNASMLLI QSESTDTNTSQEEVDPKSQLANKTIFKTDNPNLSIIEINDNSIKEEDLEK VVLVEGDSVKNLLKKSPSKEASANADKRRRKESLLHTSKQKLDISIAEAS AAADGDGEKRDLVSVIDQPQTKREITIYDTIEEFEQNLPSTVTLLNTPFG SKVYLVGTAHFSEESQDDVSYVIRNVRPDVVMVELCPSRIHILKLDEKTL LEEAKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGMAPGGEFR RAFEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMKLVWRLTFTDSI SIEEVEECKQSDLLEKLMQEMAGEFPAFSDVFVRERDVFLCHSLQLAALP QAAPGGQQVRPVRVVGVVGIGHANGIAKMWGTVDPKKIPAILEIPPASLG QRVCKYTLKYGLIGLGCYGAFRFFRPRLTRLF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12360-PB | 532 | CG12360-PB | 1..532 | 1..532 | 2705 | 100 | Plus |
CG12360-PA | 532 | CG12360-PA | 1..532 | 1..532 | 2705 | 100 | Plus |
CG12360-PC | 333 | CG12360-PC | 1..44 | 1..44 | 229 | 100 | Plus |