Clone RE12073 Report

Search the DGRC for RE12073

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:120
Well:73
Vector:pFlc-1
Associated Gene/TranscriptCG12360-RA
Protein status:RE12073.pep: gold
Preliminary Size:1921
Sequenced Size:2164

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12360 2001-12-12 Blastp of sequenced clone
CG12360 2002-01-01 Sim4 clustering to Release 2
CG12360 2003-01-01 Sim4 clustering to Release 3
CG12360 2008-04-29 Release 5.5 accounting
CG12360 2008-08-15 Release 5.9 accounting
CG12360 2008-12-18 5.12 accounting

Clone Sequence Records

RE12073.complete Sequence

2164 bp (2164 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070575

> RE12073.complete
GCATTTTAAGCATTAGGCAACACTGGTCGACGCTAGCAAGAAGAATTTAA
TCACAATTTAATTTCTTTAGTTCTTTGGGTTTTTATTTAAATTAAGAGCA
CGCATTGAATCAAAAACGTAATCAGCGCCAATCAAATTGAGTTTTCAATC
AGCAGACAGTCGTCAATTAAGGCCTCTGCCAATGTGCCCCAAACATCCAG
CAGTGCAACAACACCCACACTAAACACAAATTTTCAGTTCTTCGCCAGAT
GTTTAAACGTCGCCTCGCCAGCAACCGAAACCGAATTTCCACTAGCAACC
GATTCTTCCAGGCCTCCAACTGACCCAACTGAACACGACCATGGACGTAT
CCGCCTCCACGTCGTTTGAATCCTCGCCGGACAAGAGAAACAGCATCTAT
GTGGGCGACAACACTTTCTACGACAGCGCCCTGGATCACCAGCTGTCCAC
CACGGCCTACAAGTCGTGCAATGAGAGCCTTATCAGCGAACTCAGCCAGA
ATCCTCTTGGCCCCTCGAACTCGGCCAACAAGACAGCTAGTGCGGAATTT
GGCAATGAATCCGCTGCATTCAAGCCCCTCGGATCCCCGGCAGCTTTCAA
CAATGCCACGCCAGCGCTAAATGCCAGCATGCTGCTGATTCAGTCGGAGA
GCACGGACACTAATACCTCGCAGGAGGAGGTGGACCCCAAGTCACAACTG
GCCAACAAGACAATATTCAAGACGGATAATCCCAACCTGTCAATTATAGA
AATTAACGATAACTCGATTAAGGAGGAGGACCTCGAGAAGGTGGTGCTGG
TCGAGGGCGACAGTGTGAAGAATCTTTTGAAGAAGTCGCCCAGCAAGGAG
GCTTCGGCAAACGCTGACAAAAGACGCCGCAAGGAATCCCTACTGCACAC
GAGCAAACAAAAATTGGACATTTCCATCGCTGAAGCTTCGGCAGCCGCCG
ATGGTGATGGCGAGAAGCGGGATCTGGTGTCGGTCATAGATCAGCCGCAG
ACCAAGCGCGAAATCACAATTTACGATACCATTGAGGAGTTCGAACAGAA
TCTGCCGTCGACGGTGACGCTGTTGAACACGCCCTTCGGCAGCAAGGTAT
ATCTTGTGGGCACGGCCCACTTCAGCGAGGAGTCGCAGGATGACGTCTCT
TATGTCATTCGCAATGTCCGTCCAGATGTGGTAATGGTGGAGTTGTGTCC
ATCGCGCATACACATCCTTAAGCTCGATGAAAAGACCCTGCTGGAGGAAG
CCAAAAGCATCAATATTCCCAAGATTCGAGGAATCCTGCACACGCACGGC
TACATCAATGGCATCTTTTTCATCCTACTGCTGCAGATGAGCGCTCAGAT
CGCCAAGGACCTGGGCATGGCGCCCGGTGGCGAATTTCGCCGTGCCTTCG
AGGAGATTCACAAGCTGCCCGGTTGCATCTTACATCTAGGCGATCGCCCA
ATCCGCATCACACTTTACCGCGCTCTGCGCGCTTTGTCCATGTGGCAGAC
CATGAAACTGGTGTGGCGTCTTACCTTCACGGACAGCATCAGCATTGAGG
AGGTAGAGGAGTGCAAGCAGAGCGATCTGTTAGAGAAGCTGATGCAGGAG
ATGGCCGGCGAGTTTCCTGCCTTTTCGGATGTGTTTGTGCGCGAGCGCGA
CGTTTTCCTATGCCACTCTCTGCAACTGGCTGCGCTGCCTCAGGCGGCTC
CAGGTGGCCAACAGGTCCGTCCGGTACGTGTGGTCGGAGTGGTGGGCATC
GGACACGCCAACGGAATTGCCAAGATGTGGGGCACCGTCGATCCGAAGAA
GATTCCGGCCATTCTCGAAATACCGCCGGCCAGCCTGGGACAACGCGTCT
GCAAGTACACCCTGAAGTACGGCCTAATTGGCCTCGGATGCTACGGTGCC
TTTCGTTTCTTCCGGCCCCGCCTGACCCGCTTATTTTAGATGGACCAAGT
ATGAGGCGACTGTGTACACTGTGTCTGCTATGTTAATGATTTTGTTATTA
GTGACTAACGAATCCCTGCGCTGATTTACCATTTTGGAGTGCGCTGCTGA
AGCGAATTAGTTTTATTTTTCAATGATGTTTTGATAGACTCGTTTATATA
CGAAATATATCCATGGATGTATATACATACAAACCAAACAGGAAAGACCA
AAAAAAAAAAAAAA

RE12073.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12360.b 3034 CG12360.b 32..2181 1..2150 10735 99.9 Plus
CG12360-RA 2370 CG12360-RA 32..2181 1..2150 10735 99.9 Plus
CG12360.a 2665 CG12360.a 32..2181 1..2150 10735 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8852310..8853194 2149..1272 4255 99 Minus
chr3R 27901430 chr3R 8853429..8854111 1155..473 3415 100 Minus
chr3R 27901430 chr3R 8855145..8855383 473..235 1195 100 Minus
chr3R 27901430 chr3R 8855640..8855876 237..1 1155 99.2 Minus
chr3R 27901430 chr3R 8853253..8853372 1273..1154 600 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:34:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13027090..13027968 2150..1272 4395 100 Minus
3R 32079331 3R 13028203..13028885 1155..473 3415 100 Minus
3R 32079331 3R 13029919..13030157 473..235 1195 100 Minus
3R 32079331 3R 13030414..13030650 237..1 1170 99.6 Minus
3R 32079331 3R 13028027..13028146 1273..1154 600 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12767921..12768799 2150..1272 4395 100 Minus
3R 31820162 3R 12769034..12769716 1155..473 3415 100 Minus
3R 31820162 3R 12770750..12770988 473..235 1195 100 Minus
3R 31820162 3R 12771245..12771481 237..1 1170 99.5 Minus
3R 31820162 3R 12768858..12768977 1273..1154 600 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:07:48 has no hits.

RE12073.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:08:31 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8853253..8853372 1154..1273 100 <- Minus
chr3R 8855640..8855876 1..237 99   Minus
chr3R 8852310..8853192 1274..2149 98 <- Minus
chr3R 8853431..8854110 474..1153 100 <- Minus
chr3R 8855145..8855380 238..473 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:54:36 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RB 1..1599 341..1939 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:17:24 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RB 1..1599 341..1939 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:33:15 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 1..1599 341..1939 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:43:29 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RB 1..1599 341..1939 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:41 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 1..1599 341..1939 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:50:02 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 1..2149 1..2149 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:17:24 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 1..2149 1..2149 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:33:15 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 10..2158 1..2149 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:43:29 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 1..2149 1..2149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:41 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RA 10..2158 1..2149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:31 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13027091..13027966 1274..2149 100 <- Minus
3R 13028027..13028146 1154..1273 100 <- Minus
3R 13028205..13028884 474..1153 100 <- Minus
3R 13029919..13030154 238..473 100 <- Minus
3R 13030414..13030650 1..237 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:31 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13027091..13027966 1274..2149 100 <- Minus
3R 13028027..13028146 1154..1273 100 <- Minus
3R 13028205..13028884 474..1153 100 <- Minus
3R 13029919..13030154 238..473 100 <- Minus
3R 13030414..13030650 1..237 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:08:31 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13027091..13027966 1274..2149 100 <- Minus
3R 13028027..13028146 1154..1273 100 <- Minus
3R 13028205..13028884 474..1153 100 <- Minus
3R 13029919..13030154 238..473 100 <- Minus
3R 13030414..13030650 1..237 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:33:15 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8852813..8853688 1274..2149 100 <- Minus
arm_3R 8853749..8853868 1154..1273 100 <- Minus
arm_3R 8853927..8854606 474..1153 100 <- Minus
arm_3R 8855641..8855876 238..473 100 <- Minus
arm_3R 8856136..8856372 1..237 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:19:38 Download gff for RE12073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12767922..12768797 1274..2149 100 <- Minus
3R 12768858..12768977 1154..1273 100 <- Minus
3R 12769036..12769715 474..1153 100 <- Minus
3R 12770750..12770985 238..473 100 <- Minus
3R 12771245..12771481 1..237 99   Minus

RE12073.pep Sequence

Translation from 340 to 1938

> RE12073.pep
MDVSASTSFESSPDKRNSIYVGDNTFYDSALDHQLSTTAYKSCNESLISE
LSQNPLGPSNSANKTASAEFGNESAAFKPLGSPAAFNNATPALNASMLLI
QSESTDTNTSQEEVDPKSQLANKTIFKTDNPNLSIIEINDNSIKEEDLEK
VVLVEGDSVKNLLKKSPSKEASANADKRRRKESLLHTSKQKLDISIAEAS
AAADGDGEKRDLVSVIDQPQTKREITIYDTIEEFEQNLPSTVTLLNTPFG
SKVYLVGTAHFSEESQDDVSYVIRNVRPDVVMVELCPSRIHILKLDEKTL
LEEAKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGMAPGGEFR
RAFEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMKLVWRLTFTDSI
SIEEVEECKQSDLLEKLMQEMAGEFPAFSDVFVRERDVFLCHSLQLAALP
QAAPGGQQVRPVRVVGVVGIGHANGIAKMWGTVDPKKIPAILEIPPASLG
QRVCKYTLKYGLIGLGCYGAFRFFRPRLTRLF*

RE12073.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18088-PA 541 GF18088-PA 1..541 1..532 2360 86.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17082-PA 532 GG17082-PA 1..532 1..532 2757 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19196-PA 563 GH19196-PA 14..563 11..532 2085 77.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG46280-PB 532 CG46280-PB 1..532 1..532 2705 100 Plus
CG46280-PA 532 CG46280-PA 1..532 1..532 2705 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24230-PA 568 GI24230-PA 1..568 1..532 2106 76.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:35:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23149-PA 954 GL23149-PA 432..954 19..532 2025 79.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27162-PB 545 GA27162-PB 19..545 14..532 2096 82 Plus
Dpse\GA27159-PE 545 GA27159-PE 19..545 14..532 2085 81.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25964-PA 532 GM25964-PA 1..532 1..532 2800 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20525-PA 532 GD20525-PA 1..532 1..532 2799 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10803-PA 567 GJ10803-PA 1..567 1..532 2111 76.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10854-PA 549 GK10854-PA 1..549 1..532 2027 75.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24471-PA 532 GE24471-PA 1..532 1..532 2781 97.6 Plus

RE12073.hyp Sequence

Translation from 340 to 1938

> RE12073.hyp
MDVSASTSFESSPDKRNSIYVGDNTFYDSALDHQLSTTAYKSCNESLISE
LSQNPLGPSNSANKTASAEFGNESAAFKPLGSPAAFNNATPALNASMLLI
QSESTDTNTSQEEVDPKSQLANKTIFKTDNPNLSIIEINDNSIKEEDLEK
VVLVEGDSVKNLLKKSPSKEASANADKRRRKESLLHTSKQKLDISIAEAS
AAADGDGEKRDLVSVIDQPQTKREITIYDTIEEFEQNLPSTVTLLNTPFG
SKVYLVGTAHFSEESQDDVSYVIRNVRPDVVMVELCPSRIHILKLDEKTL
LEEAKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGMAPGGEFR
RAFEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMKLVWRLTFTDSI
SIEEVEECKQSDLLEKLMQEMAGEFPAFSDVFVRERDVFLCHSLQLAALP
QAAPGGQQVRPVRVVGVVGIGHANGIAKMWGTVDPKKIPAILEIPPASLG
QRVCKYTLKYGLIGLGCYGAFRFFRPRLTRLF*

RE12073.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12360-PB 532 CG12360-PB 1..532 1..532 2705 100 Plus
CG12360-PA 532 CG12360-PA 1..532 1..532 2705 100 Plus
CG12360-PC 333 CG12360-PC 1..44 1..44 229 100 Plus