BDGP Sequence Production Resources |
Search the DGRC for RE12138
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 121 |
Well: | 38 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11384-RA |
Protein status: | RE12138.pep: gold |
Preliminary Size: | 1767 |
Sequenced Size: | 2162 |
Gene | Date | Evidence |
---|---|---|
CG11384 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11384 | 2002-02-27 | Blastp of sequenced clone |
CG11384 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11384 | 2008-04-29 | Release 5.5 accounting |
CG11384 | 2008-08-15 | Release 5.9 accounting |
CG11384 | 2008-12-18 | 5.12 accounting |
2162 bp (2162 high quality bases) assembled on 2002-02-27
GenBank Submission: AY089585
> RE12138.complete AGTCGAGCATAATGTCAACAAGAGGTGGCTTCATTCGGCTCACAATTCTG GTGACGGTGGCCGTCTTGGCGATCTTCGTCCTCCTAAGTGCTCTCCAGCG CACGGATCATCTCAAACCCACTCCCTTGGGCCAATATGGTGTTAGTGTGG AGGCCGGACTGGCTGCAAAAGTAACTCCCCCACCGATTCGGCACCTGGAG GAGCCCATAAAAGAGGAACTTGTGCGGCAATTGGAGCAGGAACTGCCAGA GGTGGACTATGGCTTCTGGTACCACTGGGCCAAACCCATGGGCTACAAGA TAAACAAAACATGTGCTGTATATCCCGATCCCCTGGACCTGCAGCTGCAC AACATCTACTGGCAGACCTTCGTCAACGCGAACGTGACCTTTCGGCTATA CGCCGCCTACTTGGACAAGCGGAAAGGGCTTAAATTGCCAACGGTAAGGA TTTTGGCCACTGCCAATCAGATCGACAACGAGTTCCCACCAACCCATTGT CAAATGTGGTTTGAGGGATATCGGCAGCCCATTTTTGTACCCGTGGCGGA GTTCCTGAGTGTGTGGGTCGAGGCGTGGGGCAATAAGCCGAATCTTAACT ACCCGCACCTGTTGAGCTGTCCGGTTCCCAGTGAATTGCCGCCGCCTACG GTGAACTCCTTTCCAAAAACAGTTTCCCTAGTTGCGCGGCATTGCGAAAA GGCGGGAAATTCGCTGAGGGTCAATATGAATCGGAAGCAGTCACTGCCCG TGGTGATCCCGCCCTCTCAAAATCCCAAGTCCCAAAATGCCACTATCCAA AGTCAAAATGAAGCTCTTCAGAACTTTGGAGTTTGCCTCAAGGGATTCGA TTTTCCCTATGTGGATTTATCAGAGCGCCTTATCGAGTGGTTTGAGCTGC AGCGAATTTTGGGAGCCTCACGGATCTACGCCTATATGTACGATGTTCAT CCAGCGGTGCAGAGGGTCCTCGACTACTATCAGCGCACTGGATACTTGGA GCTGAGACCTTTGACCCTGGCCAATGGAATGCCCAGACTGAGACACTACC AGCACATGTTGCTGCAGCACAGGAAACTAGAGAAAAGACTAAACGAACTG ATACCCTACAACGATTGCTTCTACAGGAATCTGTACCGGCACGACTATCT GGTCAACGTGGATGTGGATGAGGTAATAATGCCTCTGGGTGACAACCGCA ACTGGCATCAGTTGGTGCAGAAGGCTCACGCCCTAGAGGTCGAAAAGGGC GGCAAGTGTGCTGGTCGCTTCCCTGCCTTGTGCTTCATCAATTCGTACTT CACCAAAGTGCCCACCGAGTTCAGCAATCACGAGGAGCAGGCTATCGCCG GGGAGTTGTACGTCCTCCAGCACACACAGCGGATCAAGAACTACTCTATG CCAGGACGGGCTACCAAGTGCTTCCACAACGCCCGTCTATCCTTGACGCT GCACAACCACTTTACCCTCAAGTGGCTGCCCGGCGGATGTAACCCTCGGA CCTTGAACACGTCCATTGCCCAAATGCAACACTACCGGGAACCCGATGAC AAATATAACCTAACCAATCTGACGGATGATCGCAGCGTCTGGAAGTTTGC CGGCGAACTGCGGGCCGCTGTGGAGTATGTGTGGCTTCATCTGGACGATG TGCTGGCCCAAGTCAGCGATCCCGAGGAGCAGCAACAGCAGCTGGAGGAA TCGCTGGACCAGGAAGGTGACGATCTGGACCGTGAGCAACAGCCACTTGT TCCACTGCCTCCGAAGCCAGTATCATGATCATTACAGCTAAGGTTTGTCT CGTATTGTTGGTTCGTGTAGTGCTCCAAAGATTAAACAGGTCAACTAACT AGTTTGTAGGCGTTTGTGTGTCAGAATAGTTGGACAAGGGTTAAACGGTT GGTGGCTGTATGCTTATCTACATTGCTGATAATAGAATTCATGCTTTAAT AGAATTGGACATCAAAGTGCCCCAAAATGCTGTTGTCTGTGGATATACTT CCTGTAGCTAAATAGTTCGACGTCGAAGTAATTGTACAACCTTTTGTGTT TTTTTTTTTTTTTTTGCTATTTATTATATTTATATCGTGCGATAAATGTA CTCACTATGTTAATTTAAGACTGTTCTAAAAATAAATGTTTACCCCAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11384-RA | 2148 | CG11384-RA | 1..2148 | 1..2148 | 10740 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 1067841..1069986 | 2146..1 | 10730 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 1173875..1176022 | 2148..1 | 10740 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 1181973..1184120 | 2148..1 | 10740 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 791..853 | 257..196 | 123 | 68.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 1067841..1069986 | 1..2146 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11384-RA | 1..1767 | 12..1778 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11384-RA | 1..1767 | 12..1778 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11384-RA | 1..1767 | 12..1778 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11384-RA | 1..1767 | 12..1778 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11384-RA | 1..1767 | 12..1778 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11384-RA | 1..2146 | 1..2146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11384-RA | 1..2146 | 1..2146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11384-RA | 14..2159 | 1..2146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11384-RA | 1..2146 | 1..2146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11384-RA | 14..2159 | 1..2146 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1173877..1176022 | 1..2146 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1173877..1176022 | 1..2146 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1173877..1176022 | 1..2146 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 1067910..1070055 | 1..2146 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 1181975..1184120 | 1..2146 | 100 | Minus |
Translation from 2 to 1777
> RE12138.hyp SSIMSTRGGFIRLTILVTVAVLAIFVLLSALQRTDHLKPTPLGQYGVSVE AGLAAKVTPPPIRHLEEPIKEELVRQLEQELPEVDYGFWYHWAKPMGYKI NKTCAVYPDPLDLQLHNIYWQTFVNANVTFRLYAAYLDKRKGLKLPTVRI LATANQIDNEFPPTHCQMWFEGYRQPIFVPVAEFLSVWVEAWGNKPNLNY PHLLSCPVPSELPPPTVNSFPKTVSLVARHCEKAGNSLRVNMNRKQSLPV VIPPSQNPKSQNATIQSQNEALQNFGVCLKGFDFPYVDLSERLIEWFELQ RILGASRIYAYMYDVHPAVQRVLDYYQRTGYLELRPLTLANGMPRLRHYQ HMLLQHRKLEKRLNELIPYNDCFYRNLYRHDYLVNVDVDEVIMPLGDNRN WHQLVQKAHALEVEKGGKCAGRFPALCFINSYFTKVPTEFSNHEEQAIAG ELYVLQHTQRIKNYSMPGRATKCFHNARLSLTLHNHFTLKWLPGGCNPRT LNTSIAQMQHYREPDDKYNLTNLTDDRSVWKFAGELRAAVEYVWLHLDDV LAQVSDPEEQQQQLEESLDQEGDDLDREQQPLVPLPPKPVS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11384-PA | 588 | CG11384-PA | 1..588 | 4..591 | 3166 | 100 | Plus |
CG3655-PD | 563 | CG3655-PD | 81..523 | 71..536 | 820 | 37.6 | Plus |
CG3655-PB | 563 | CG3655-PB | 81..523 | 71..536 | 820 | 37.6 | Plus |
CG3655-PA | 563 | CG3655-PA | 81..523 | 71..536 | 820 | 37.6 | Plus |
CG3655-PC | 596 | CG3655-PC | 81..523 | 71..536 | 820 | 37.6 | Plus |
Translation from 11 to 1777
> RE12138.pep MSTRGGFIRLTILVTVAVLAIFVLLSALQRTDHLKPTPLGQYGVSVEAGL AAKVTPPPIRHLEEPIKEELVRQLEQELPEVDYGFWYHWAKPMGYKINKT CAVYPDPLDLQLHNIYWQTFVNANVTFRLYAAYLDKRKGLKLPTVRILAT ANQIDNEFPPTHCQMWFEGYRQPIFVPVAEFLSVWVEAWGNKPNLNYPHL LSCPVPSELPPPTVNSFPKTVSLVARHCEKAGNSLRVNMNRKQSLPVVIP PSQNPKSQNATIQSQNEALQNFGVCLKGFDFPYVDLSERLIEWFELQRIL GASRIYAYMYDVHPAVQRVLDYYQRTGYLELRPLTLANGMPRLRHYQHML LQHRKLEKRLNELIPYNDCFYRNLYRHDYLVNVDVDEVIMPLGDNRNWHQ LVQKAHALEVEKGGKCAGRFPALCFINSYFTKVPTEFSNHEEQAIAGELY VLQHTQRIKNYSMPGRATKCFHNARLSLTLHNHFTLKWLPGGCNPRTLNT SIAQMQHYREPDDKYNLTNLTDDRSVWKFAGELRAAVEYVWLHLDDVLAQ VSDPEEQQQQLEESLDQEGDDLDREQQPLVPLPPKPVS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22029-PA | 596 | GF22029-PA | 1..582 | 1..570 | 2176 | 71.5 | Plus |
Dana\GF22034-PA | 568 | GF22034-PA | 81..523 | 68..533 | 818 | 38 | Plus |
Dana\GF22030-PA | 565 | GF22030-PA | 93..517 | 101..535 | 757 | 37 | Plus |
Dana\GF20876-PA | 450 | GF20876-PA | 84..449 | 101..509 | 555 | 33.7 | Plus |
Dana\GF12788-PA | 467 | GF12788-PA | 225..423 | 289..510 | 158 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12717-PA | 587 | GG12717-PA | 1..587 | 1..588 | 2696 | 84.8 | Plus |
Dere\GG12720-PA | 566 | GG12720-PA | 81..523 | 68..533 | 807 | 37.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12728-PA | 600 | GH12728-PA | 1..579 | 1..570 | 1784 | 61 | Plus |
Dgri\GH12730-PA | 572 | GH12730-PA | 89..531 | 68..533 | 815 | 37.4 | Plus |
Dgri\GH11996-PA | 558 | GH11996-PA | 9..548 | 10..563 | 757 | 34.2 | Plus |
Dgri\GH10907-PA | 491 | GH10907-PA | 18..481 | 100..563 | 749 | 36.1 | Plus |
Dgri\GH10903-PA | 491 | GH10903-PA | 18..481 | 100..563 | 739 | 35.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11384-PA | 588 | CG11384-PA | 1..588 | 1..588 | 3166 | 100 | Plus |
CG3655-PD | 563 | CG3655-PD | 81..523 | 68..533 | 820 | 37.6 | Plus |
CG3655-PB | 563 | CG3655-PB | 81..523 | 68..533 | 820 | 37.6 | Plus |
CG3655-PA | 563 | CG3655-PA | 81..523 | 68..533 | 820 | 37.6 | Plus |
CG3655-PC | 596 | CG3655-PC | 81..523 | 68..533 | 820 | 37.6 | Plus |
CG12715-PB | 505 | CG12715-PB | 75..469 | 63..517 | 530 | 30.9 | Plus |
CG12715-PA | 505 | CG12715-PA | 75..469 | 63..517 | 530 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14981-PA | 593 | GI14981-PA | 1..572 | 1..570 | 1791 | 59.9 | Plus |
Dmoj\GI14986-PA | 571 | GI14986-PA | 89..531 | 68..533 | 816 | 37.6 | Plus |
Dmoj\GI15623-PA | 565 | GI15623-PA | 86..557 | 101..565 | 774 | 37.2 | Plus |
Dmoj\GI16264-PA | 553 | GI16264-PA | 122..537 | 94..533 | 647 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14402-PA | 561 | GL14402-PA | 81..523 | 68..533 | 813 | 37.8 | Plus |
Dper\GL14398-PA | 455 | GL14398-PA | 146..437 | 272..567 | 531 | 37.4 | Plus |
Dper\GL22952-PA | 483 | GL22952-PA | 96..469 | 87..533 | 463 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10965-PA | 581 | GA10965-PA | 1..554 | 1..565 | 2013 | 68.5 | Plus |
Dpse\GA17592-PA | 561 | GA17592-PA | 81..523 | 68..533 | 813 | 37.8 | Plus |
Dpse\GA23004-PA | 584 | GA23004-PA | 64..545 | 63..538 | 768 | 35.8 | Plus |
Dpse\GA11770-PA | 512 | GA11770-PA | 96..498 | 87..533 | 530 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18993-PA | 591 | GM18993-PA | 1..575 | 1..575 | 2942 | 95.8 | Plus |
Dsec\GM18999-PA | 566 | GM18999-PA | 81..523 | 68..533 | 804 | 37.6 | Plus |
Dsec\GM18994-PA | 564 | GM18994-PA | 91..527 | 101..538 | 778 | 39.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16434-PA | 564 | GD16434-PA | 91..527 | 101..538 | 793 | 39.6 | Plus |
Dsim\GD16433-PA | 155 | GD16433-PA | 1..146 | 1..146 | 730 | 93.2 | Plus |
Dsim\GD24525-PA | 506 | GD24525-PA | 10..488 | 9..533 | 522 | 28.1 | Plus |
Dsim\GD16438-PA | 301 | GD16438-PA | 81..295 | 68..308 | 418 | 38.3 | Plus |
Dsim\GD22070-PA | 805 | GD22070-PA | 219..663 | 89..509 | 207 | 25.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16330-PA | 591 | GJ16330-PA | 53..570 | 48..570 | 1835 | 64.8 | Plus |
Dvir\GJ16335-PA | 565 | GJ16335-PA | 54..561 | 63..569 | 804 | 35.8 | Plus |
Dvir\GJ16905-PA | 529 | GJ16905-PA | 9..513 | 7..533 | 617 | 31.8 | Plus |
Dvir\GJ15223-PA | 186 | GJ15223-PA | 1..182 | 390..569 | 253 | 33.2 | Plus |
Dvir\GJ15224-PA | 456 | GJ15224-PA | 54..234 | 63..246 | 234 | 32.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16240-PA | 579 | GK16240-PA | 57..559 | 53..558 | 1751 | 62.1 | Plus |
Dwil\GK16244-PA | 560 | GK16244-PA | 82..524 | 68..533 | 830 | 38.7 | Plus |
Dwil\GK16241-PA | 419 | GK16241-PA | 1..383 | 147..539 | 668 | 35.8 | Plus |
Dwil\GK17786-PA | 494 | GK17786-PA | 225..423 | 289..510 | 162 | 27.9 | Plus |
Dwil\GK17787-PA | 467 | GK17787-PA | 225..423 | 289..510 | 158 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16542-PA | 586 | GE16542-PA | 1..570 | 1..571 | 2650 | 85.4 | Plus |
Dyak\GE16546-PA | 566 | GE16546-PA | 81..523 | 68..533 | 806 | 37.6 | Plus |
Dyak\GE16543-PA | 564 | GE16543-PA | 91..527 | 101..538 | 800 | 39.9 | Plus |
Dyak\GE16183-PA | 501 | GE16183-PA | 74..461 | 68..513 | 558 | 30.5 | Plus |
Dyak\GE19350-PA | 466 | GE19350-PA | 225..423 | 289..510 | 153 | 26.7 | Plus |