Clone RE12138 Report

Search the DGRC for RE12138

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:121
Well:38
Vector:pFlc-1
Associated Gene/TranscriptCG11384-RA
Protein status:RE12138.pep: gold
Preliminary Size:1767
Sequenced Size:2162

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11384 2002-01-01 Sim4 clustering to Release 2
CG11384 2002-02-27 Blastp of sequenced clone
CG11384 2003-01-01 Sim4 clustering to Release 3
CG11384 2008-04-29 Release 5.5 accounting
CG11384 2008-08-15 Release 5.9 accounting
CG11384 2008-12-18 5.12 accounting

Clone Sequence Records

RE12138.complete Sequence

2162 bp (2162 high quality bases) assembled on 2002-02-27

GenBank Submission: AY089585

> RE12138.complete
AGTCGAGCATAATGTCAACAAGAGGTGGCTTCATTCGGCTCACAATTCTG
GTGACGGTGGCCGTCTTGGCGATCTTCGTCCTCCTAAGTGCTCTCCAGCG
CACGGATCATCTCAAACCCACTCCCTTGGGCCAATATGGTGTTAGTGTGG
AGGCCGGACTGGCTGCAAAAGTAACTCCCCCACCGATTCGGCACCTGGAG
GAGCCCATAAAAGAGGAACTTGTGCGGCAATTGGAGCAGGAACTGCCAGA
GGTGGACTATGGCTTCTGGTACCACTGGGCCAAACCCATGGGCTACAAGA
TAAACAAAACATGTGCTGTATATCCCGATCCCCTGGACCTGCAGCTGCAC
AACATCTACTGGCAGACCTTCGTCAACGCGAACGTGACCTTTCGGCTATA
CGCCGCCTACTTGGACAAGCGGAAAGGGCTTAAATTGCCAACGGTAAGGA
TTTTGGCCACTGCCAATCAGATCGACAACGAGTTCCCACCAACCCATTGT
CAAATGTGGTTTGAGGGATATCGGCAGCCCATTTTTGTACCCGTGGCGGA
GTTCCTGAGTGTGTGGGTCGAGGCGTGGGGCAATAAGCCGAATCTTAACT
ACCCGCACCTGTTGAGCTGTCCGGTTCCCAGTGAATTGCCGCCGCCTACG
GTGAACTCCTTTCCAAAAACAGTTTCCCTAGTTGCGCGGCATTGCGAAAA
GGCGGGAAATTCGCTGAGGGTCAATATGAATCGGAAGCAGTCACTGCCCG
TGGTGATCCCGCCCTCTCAAAATCCCAAGTCCCAAAATGCCACTATCCAA
AGTCAAAATGAAGCTCTTCAGAACTTTGGAGTTTGCCTCAAGGGATTCGA
TTTTCCCTATGTGGATTTATCAGAGCGCCTTATCGAGTGGTTTGAGCTGC
AGCGAATTTTGGGAGCCTCACGGATCTACGCCTATATGTACGATGTTCAT
CCAGCGGTGCAGAGGGTCCTCGACTACTATCAGCGCACTGGATACTTGGA
GCTGAGACCTTTGACCCTGGCCAATGGAATGCCCAGACTGAGACACTACC
AGCACATGTTGCTGCAGCACAGGAAACTAGAGAAAAGACTAAACGAACTG
ATACCCTACAACGATTGCTTCTACAGGAATCTGTACCGGCACGACTATCT
GGTCAACGTGGATGTGGATGAGGTAATAATGCCTCTGGGTGACAACCGCA
ACTGGCATCAGTTGGTGCAGAAGGCTCACGCCCTAGAGGTCGAAAAGGGC
GGCAAGTGTGCTGGTCGCTTCCCTGCCTTGTGCTTCATCAATTCGTACTT
CACCAAAGTGCCCACCGAGTTCAGCAATCACGAGGAGCAGGCTATCGCCG
GGGAGTTGTACGTCCTCCAGCACACACAGCGGATCAAGAACTACTCTATG
CCAGGACGGGCTACCAAGTGCTTCCACAACGCCCGTCTATCCTTGACGCT
GCACAACCACTTTACCCTCAAGTGGCTGCCCGGCGGATGTAACCCTCGGA
CCTTGAACACGTCCATTGCCCAAATGCAACACTACCGGGAACCCGATGAC
AAATATAACCTAACCAATCTGACGGATGATCGCAGCGTCTGGAAGTTTGC
CGGCGAACTGCGGGCCGCTGTGGAGTATGTGTGGCTTCATCTGGACGATG
TGCTGGCCCAAGTCAGCGATCCCGAGGAGCAGCAACAGCAGCTGGAGGAA
TCGCTGGACCAGGAAGGTGACGATCTGGACCGTGAGCAACAGCCACTTGT
TCCACTGCCTCCGAAGCCAGTATCATGATCATTACAGCTAAGGTTTGTCT
CGTATTGTTGGTTCGTGTAGTGCTCCAAAGATTAAACAGGTCAACTAACT
AGTTTGTAGGCGTTTGTGTGTCAGAATAGTTGGACAAGGGTTAAACGGTT
GGTGGCTGTATGCTTATCTACATTGCTGATAATAGAATTCATGCTTTAAT
AGAATTGGACATCAAAGTGCCCCAAAATGCTGTTGTCTGTGGATATACTT
CCTGTAGCTAAATAGTTCGACGTCGAAGTAATTGTACAACCTTTTGTGTT
TTTTTTTTTTTTTTTGCTATTTATTATATTTATATCGTGCGATAAATGTA
CTCACTATGTTAATTTAAGACTGTTCTAAAAATAAATGTTTACCCCAAAA
AAAAAAAAAAAA

RE12138.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11384-RA 2148 CG11384-RA 1..2148 1..2148 10740 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1067841..1069986 2146..1 10730 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:34:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1173875..1176022 2148..1 10740 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1181973..1184120 2148..1 10740 100 Minus
Blast to na_te.dros performed 2019-03-16 03:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 791..853 257..196 123 68.3 Minus

RE12138.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:09:14 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1067841..1069986 1..2146 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:54:42 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
CG11384-RA 1..1767 12..1778 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:54:12 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
CG11384-RA 1..1767 12..1778 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:42:30 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
CG11384-RA 1..1767 12..1778 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:36:44 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
CG11384-RA 1..1767 12..1778 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:32:06 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
CG11384-RA 1..1767 12..1778 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:06:55 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
CG11384-RA 1..2146 1..2146 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:54:12 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
CG11384-RA 1..2146 1..2146 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:42:30 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
CG11384-RA 14..2159 1..2146 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:36:44 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
CG11384-RA 1..2146 1..2146 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:32:06 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
CG11384-RA 14..2159 1..2146 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:09:14 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
X 1173877..1176022 1..2146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:09:14 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
X 1173877..1176022 1..2146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:09:14 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
X 1173877..1176022 1..2146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:42:30 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1067910..1070055 1..2146 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:19:25 Download gff for RE12138.complete
Subject Subject Range Query Range Percent Splice Strand
X 1181975..1184120 1..2146 100   Minus

RE12138.hyp Sequence

Translation from 2 to 1777

> RE12138.hyp
SSIMSTRGGFIRLTILVTVAVLAIFVLLSALQRTDHLKPTPLGQYGVSVE
AGLAAKVTPPPIRHLEEPIKEELVRQLEQELPEVDYGFWYHWAKPMGYKI
NKTCAVYPDPLDLQLHNIYWQTFVNANVTFRLYAAYLDKRKGLKLPTVRI
LATANQIDNEFPPTHCQMWFEGYRQPIFVPVAEFLSVWVEAWGNKPNLNY
PHLLSCPVPSELPPPTVNSFPKTVSLVARHCEKAGNSLRVNMNRKQSLPV
VIPPSQNPKSQNATIQSQNEALQNFGVCLKGFDFPYVDLSERLIEWFELQ
RILGASRIYAYMYDVHPAVQRVLDYYQRTGYLELRPLTLANGMPRLRHYQ
HMLLQHRKLEKRLNELIPYNDCFYRNLYRHDYLVNVDVDEVIMPLGDNRN
WHQLVQKAHALEVEKGGKCAGRFPALCFINSYFTKVPTEFSNHEEQAIAG
ELYVLQHTQRIKNYSMPGRATKCFHNARLSLTLHNHFTLKWLPGGCNPRT
LNTSIAQMQHYREPDDKYNLTNLTDDRSVWKFAGELRAAVEYVWLHLDDV
LAQVSDPEEQQQQLEESLDQEGDDLDREQQPLVPLPPKPVS*

RE12138.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11384-PA 588 CG11384-PA 1..588 4..591 3166 100 Plus
CG3655-PD 563 CG3655-PD 81..523 71..536 820 37.6 Plus
CG3655-PB 563 CG3655-PB 81..523 71..536 820 37.6 Plus
CG3655-PA 563 CG3655-PA 81..523 71..536 820 37.6 Plus
CG3655-PC 596 CG3655-PC 81..523 71..536 820 37.6 Plus

RE12138.pep Sequence

Translation from 11 to 1777

> RE12138.pep
MSTRGGFIRLTILVTVAVLAIFVLLSALQRTDHLKPTPLGQYGVSVEAGL
AAKVTPPPIRHLEEPIKEELVRQLEQELPEVDYGFWYHWAKPMGYKINKT
CAVYPDPLDLQLHNIYWQTFVNANVTFRLYAAYLDKRKGLKLPTVRILAT
ANQIDNEFPPTHCQMWFEGYRQPIFVPVAEFLSVWVEAWGNKPNLNYPHL
LSCPVPSELPPPTVNSFPKTVSLVARHCEKAGNSLRVNMNRKQSLPVVIP
PSQNPKSQNATIQSQNEALQNFGVCLKGFDFPYVDLSERLIEWFELQRIL
GASRIYAYMYDVHPAVQRVLDYYQRTGYLELRPLTLANGMPRLRHYQHML
LQHRKLEKRLNELIPYNDCFYRNLYRHDYLVNVDVDEVIMPLGDNRNWHQ
LVQKAHALEVEKGGKCAGRFPALCFINSYFTKVPTEFSNHEEQAIAGELY
VLQHTQRIKNYSMPGRATKCFHNARLSLTLHNHFTLKWLPGGCNPRTLNT
SIAQMQHYREPDDKYNLTNLTDDRSVWKFAGELRAAVEYVWLHLDDVLAQ
VSDPEEQQQQLEESLDQEGDDLDREQQPLVPLPPKPVS*

RE12138.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22029-PA 596 GF22029-PA 1..582 1..570 2176 71.5 Plus
Dana\GF22034-PA 568 GF22034-PA 81..523 68..533 818 38 Plus
Dana\GF22030-PA 565 GF22030-PA 93..517 101..535 757 37 Plus
Dana\GF20876-PA 450 GF20876-PA 84..449 101..509 555 33.7 Plus
Dana\GF12788-PA 467 GF12788-PA 225..423 289..510 158 29.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12717-PA 587 GG12717-PA 1..587 1..588 2696 84.8 Plus
Dere\GG12720-PA 566 GG12720-PA 81..523 68..533 807 37.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12728-PA 600 GH12728-PA 1..579 1..570 1784 61 Plus
Dgri\GH12730-PA 572 GH12730-PA 89..531 68..533 815 37.4 Plus
Dgri\GH11996-PA 558 GH11996-PA 9..548 10..563 757 34.2 Plus
Dgri\GH10907-PA 491 GH10907-PA 18..481 100..563 749 36.1 Plus
Dgri\GH10903-PA 491 GH10903-PA 18..481 100..563 739 35.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11384-PA 588 CG11384-PA 1..588 1..588 3166 100 Plus
CG3655-PD 563 CG3655-PD 81..523 68..533 820 37.6 Plus
CG3655-PB 563 CG3655-PB 81..523 68..533 820 37.6 Plus
CG3655-PA 563 CG3655-PA 81..523 68..533 820 37.6 Plus
CG3655-PC 596 CG3655-PC 81..523 68..533 820 37.6 Plus
CG12715-PB 505 CG12715-PB 75..469 63..517 530 30.9 Plus
CG12715-PA 505 CG12715-PA 75..469 63..517 530 30.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14981-PA 593 GI14981-PA 1..572 1..570 1791 59.9 Plus
Dmoj\GI14986-PA 571 GI14986-PA 89..531 68..533 816 37.6 Plus
Dmoj\GI15623-PA 565 GI15623-PA 86..557 101..565 774 37.2 Plus
Dmoj\GI16264-PA 553 GI16264-PA 122..537 94..533 647 33.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14402-PA 561 GL14402-PA 81..523 68..533 813 37.8 Plus
Dper\GL14398-PA 455 GL14398-PA 146..437 272..567 531 37.4 Plus
Dper\GL22952-PA 483 GL22952-PA 96..469 87..533 463 30.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10965-PA 581 GA10965-PA 1..554 1..565 2013 68.5 Plus
Dpse\GA17592-PA 561 GA17592-PA 81..523 68..533 813 37.8 Plus
Dpse\GA23004-PA 584 GA23004-PA 64..545 63..538 768 35.8 Plus
Dpse\GA11770-PA 512 GA11770-PA 96..498 87..533 530 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18993-PA 591 GM18993-PA 1..575 1..575 2942 95.8 Plus
Dsec\GM18999-PA 566 GM18999-PA 81..523 68..533 804 37.6 Plus
Dsec\GM18994-PA 564 GM18994-PA 91..527 101..538 778 39.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16434-PA 564 GD16434-PA 91..527 101..538 793 39.6 Plus
Dsim\GD16433-PA 155 GD16433-PA 1..146 1..146 730 93.2 Plus
Dsim\GD24525-PA 506 GD24525-PA 10..488 9..533 522 28.1 Plus
Dsim\GD16438-PA 301 GD16438-PA 81..295 68..308 418 38.3 Plus
Dsim\GD22070-PA 805 GD22070-PA 219..663 89..509 207 25.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16330-PA 591 GJ16330-PA 53..570 48..570 1835 64.8 Plus
Dvir\GJ16335-PA 565 GJ16335-PA 54..561 63..569 804 35.8 Plus
Dvir\GJ16905-PA 529 GJ16905-PA 9..513 7..533 617 31.8 Plus
Dvir\GJ15223-PA 186 GJ15223-PA 1..182 390..569 253 33.2 Plus
Dvir\GJ15224-PA 456 GJ15224-PA 54..234 63..246 234 32.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16240-PA 579 GK16240-PA 57..559 53..558 1751 62.1 Plus
Dwil\GK16244-PA 560 GK16244-PA 82..524 68..533 830 38.7 Plus
Dwil\GK16241-PA 419 GK16241-PA 1..383 147..539 668 35.8 Plus
Dwil\GK17786-PA 494 GK17786-PA 225..423 289..510 162 27.9 Plus
Dwil\GK17787-PA 467 GK17787-PA 225..423 289..510 158 27 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16542-PA 586 GE16542-PA 1..570 1..571 2650 85.4 Plus
Dyak\GE16546-PA 566 GE16546-PA 81..523 68..533 806 37.6 Plus
Dyak\GE16543-PA 564 GE16543-PA 91..527 101..538 800 39.9 Plus
Dyak\GE16183-PA 501 GE16183-PA 74..461 68..513 558 30.5 Plus
Dyak\GE19350-PA 466 GE19350-PA 225..423 289..510 153 26.7 Plus