Clone RE12402 Report

Search the DGRC for RE12402

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:124
Well:2
Vector:pFlc-1
Associated Gene/TranscriptCG11737-RA
Protein status:RE12402.pep: gold
Preliminary Size:2107
Sequenced Size:2153

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11737 2001-12-16 Blastp of sequenced clone
CG11737 2002-01-01 Sim4 clustering to Release 2
CG11737 2003-01-01 Sim4 clustering to Release 3
CG11737 2008-04-29 Release 5.5 accounting
CG11737 2008-08-15 Release 5.9 accounting
CG11737 2008-12-18 5.12 accounting

Clone Sequence Records

RE12402.complete Sequence

2153 bp (2153 high quality bases) assembled on 2001-12-16

GenBank Submission: AY071037

> RE12402.complete
AGGCAGAGGCGCAGTCGATAGCCATCAGTTCGCCTTATTATTGTTTACAA
AGCGCAATTCCCGTCAAAATAAAGCTGATAAATTAGTGATTAAAGTCGCG
CGTATACTAAAAAAAATGCAGTTTGTGGCCTGCTAAAGGGCGCAGCATTT
GCTGCTCGACGGCAGCGGACTCAGAAAGCATTTATCACTCCGCCCAACCA
CTTGTTGTTGTTGGACTCTGCCCGCCCCATACAACGCCATCCATTATCCA
TTAAAATACCCCCGCCCGATTTCGCGTCCGTCGGTGAGGGGGACGAGGTC
CAGAATCGGGGTAATCAGTGCGTTACACTCACATCTCAATCCGGTACTCC
AGTCGGCGTCACTTTGTTGTCACATATTGTCAAATTCTCAACTCGAAGAG
CTAGAAAAGTTGCAACTCTATAAATCTCAGACTGAACAAACATCAAACAG
CGTATTAAGTAACCAATATTGGAAATCAAGGTGCGATTAGAGAGTGATTG
CCGCCGTCAAGTGTCCAGTAGTTTCAGCATCTACATTCCAAAATGGCGGG
ACAAAGCAAGCTGATCGATCCACTGTGCATCACTTGCAAGGAGTTCCAGC
ACCCATGGACGGACCACTGCGTGAGCGCCACCGCCGGTATACTACTCTCG
GCCACGCCCTACTGCCTGCGGGTCTACACAATAGTGTACGCCCTGTCCTT
GCTGATGCGCCACCGCATTCCAAGTCGCGACGATCTGCGCAAGACGCTGC
TAGGGATCATCCAATCGACGGCTTTTCTAGTTACTAATGCCTACACCTTT
ATCCTGTACAACTGTGCGCTGCGGCACATGCTCGGGAGGTACAACTTCTA
CACAGTGGCCTTTGTGCCCTGCTTTTTGGCCTCGTTTTCGGCCATTTTGG
TTGAGAGACCAGCCCGCCGACCACTACTCACTCTCTACGTGGCCAATGTG
GCCACTGAAGCGCTGTGGAAAATGGCAGAATCGAGGGGATGGGTGCGCTC
CGTTCCTAATGGACAGACACTCATCTTTGGCGTGAGCATGGCGGCGCTGC
TCTACATCTATCGTACTGGCACCACCAAGGATTCCATCTTCAACATCCTT
CGCATTTTCGTGGGCAAGGAGGAGGCGGGGCCGATTGTCAAGTCCGGGCC
CGCAGTGCCCGGTGAGCAGCCTGCGCCAGACCGCCGACGTCCCACCGTCA
GTTTTTCGACTGTATCCGACTGGGTGCGCGTGTACAGCAATCTCATTCGC
GCAAAACACGAAAGCTGTCGGCATCAACAGAGCTGCATTGGATACTCCCT
GATGGGTGGAATTAAACCCTTTGTGGGTGGAGTGGGTCTTCAGGTTGCCC
TTAAGCTGGTCATGAACGTCAAACGAATTACGGCTGGAAAAATGCCGTGG
AAGAAGATGATCTTCAACCGTGGTACTCTACAACTGGGCATCTTCATGGG
CAGCTTTTCATTTCTCTATAAGTCGGTGTCCTGCCTGCTGCGGCACAGTT
TTAACCGGGACGATGCCAGATTTGCAATTCCAGCGTCGTTAATTGCCTCT
ATATCCTTCACCCAGTATCCGGATAACACGGTAGCCCTGTATGTTATGTG
GAAGGCGCTACAGATTCTTTGCACAAAGGGCCAAGAACATGGTATTGTGC
CACACATCCCCAACTTTATGCTTTTCTTGTACTCCTTTTTCACGGCTGTG
CTTTTCCATGCGGGAATATTGGAACCCAAGAGCCTGCGCCCCAGCTACTA
CAAGTTTCTGCAGGCCATTTCGGGCGATCGACTGAGCAAGTTTAATCTGA
GCGCCTTTGATGTATTCGGGCTGAGCAGTCAACAACAGGCGCTGGACACC
ATCAAGGCACTGAACATAGTAGAAAAGTCATCGTTGCCGGCCTACTCCTT
TGCCTCCTGAGCCAGCAGTAGTCAATTTTGATTTAGTCAGTCGCCTCCAC
CAGAGGACCCTATATATCTCCTAGTATCCGCGTTCAGCTGCAAACTGTAT
ATACATACGTCAAGAGTCTCCCGCGCTCAAAGAGCGCACAACGATTATTA
AAATAAGCTAGTATGGGTGAAGTGTAAAATTTGTTGACCTTTTTTTATTT
CGCGGCATTAATAAATCGTATAAAAAATATAAAAAGCAAAAAAAAAAAAA
AAA

RE12402.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-RA 2270 CG11737-RA 81..2211 1..2131 10655 100 Plus
CG11737.a 1674 CG11737.a 69..1672 528..2131 8020 100 Plus
CG11737.c 1762 CG11737.c 130..1732 529..2131 8015 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4345563..4346506 529..1472 4675 99.7 Plus
chr3R 27901430 chr3R 4343821..4344348 1..528 2625 99.8 Plus
chr3R 27901430 chr3R 4346985..4347336 1780..2131 1760 100 Plus
chr3R 27901430 chr3R 4346757..4346925 1612..1780 845 100 Plus
chr3R 27901430 chr3R 4346559..4346701 1471..1613 715 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:34:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8519606..8520549 529..1472 4720 100 Plus
3R 32079331 3R 8517864..8518391 1..528 2640 100 Plus
3R 32079331 3R 8521028..8521379 1780..2131 1760 100 Plus
3R 32079331 3R 8520800..8520968 1612..1780 845 100 Plus
3R 32079331 3R 8520602..8520744 1471..1613 715 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8260437..8261380 529..1472 4720 100 Plus
3R 31820162 3R 8258695..8259222 1..528 2640 100 Plus
3R 31820162 3R 8261859..8262210 1780..2131 1760 100 Plus
3R 31820162 3R 8261631..8261799 1612..1780 845 100 Plus
3R 31820162 3R 8261433..8261575 1471..1613 715 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:10:18 has no hits.

RE12402.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:11:27 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4346561..4346701 1473..1613 100 -> Plus
chr3R 4346759..4346925 1614..1780 100 -> Plus
chr3R 4343821..4344348 1..528 99 -> Plus
chr3R 4345563..4346506 529..1472 99 -> Plus
chr3R 4346986..4347322 1781..2117 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:54:53 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1..1368 543..1910 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:01 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1..1368 543..1910 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:39:32 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RB 1..1368 543..1910 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:25:39 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1..1368 543..1910 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:17 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1..1368 543..1910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:27:14 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1..2133 1..2133 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:01 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1..2133 1..2133 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:39:32 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1..2130 1..2130 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:25:39 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1..2133 1..2133 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:17 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
CG11737-RA 1..2126 5..2130 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:27 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8517864..8518391 1..528 100 -> Plus
3R 8519606..8520549 529..1472 100 -> Plus
3R 8520604..8520744 1473..1613 100 -> Plus
3R 8520802..8520968 1614..1780 100 -> Plus
3R 8521029..8521379 1781..2131 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:27 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8517864..8518391 1..528 100 -> Plus
3R 8519606..8520549 529..1472 100 -> Plus
3R 8520604..8520744 1473..1613 100 -> Plus
3R 8520802..8520968 1614..1780 100 -> Plus
3R 8521029..8521379 1781..2131 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:11:27 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8517864..8518391 1..528 100 -> Plus
3R 8519606..8520549 529..1472 100 -> Plus
3R 8520604..8520744 1473..1613 100 -> Plus
3R 8520802..8520968 1614..1780 100 -> Plus
3R 8521029..8521379 1781..2131 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:39:32 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4343586..4344113 1..528 100 -> Plus
arm_3R 4345328..4346271 529..1472 100 -> Plus
arm_3R 4346326..4346466 1473..1613 100 -> Plus
arm_3R 4346524..4346690 1614..1780 100 -> Plus
arm_3R 4346751..4347101 1781..2131 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:01:10 Download gff for RE12402.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8258695..8259222 1..528 100 -> Plus
3R 8260437..8261380 529..1472 100 -> Plus
3R 8261435..8261575 1473..1613 100 -> Plus
3R 8261633..8261799 1614..1780 100 -> Plus
3R 8261860..8262210 1781..2131 100   Plus

RE12402.hyp Sequence

Translation from 542 to 1909

> RE12402.hyp
MAGQSKLIDPLCITCKEFQHPWTDHCVSATAGILLSATPYCLRVYTIVYA
LSLLMRHRIPSRDDLRKTLLGIIQSTAFLVTNAYTFILYNCALRHMLGRY
NFYTVAFVPCFLASFSAILVERPARRPLLTLYVANVATEALWKMAESRGW
VRSVPNGQTLIFGVSMAALLYIYRTGTTKDSIFNILRIFVGKEEAGPIVK
SGPAVPGEQPAPDRRRPTVSFSTVSDWVRVYSNLIRAKHESCRHQQSCIG
YSLMGGIKPFVGGVGLQVALKLVMNVKRITAGKMPWKKMIFNRGTLQLGI
FMGSFSFLYKSVSCLLRHSFNRDDARFAIPASLIASISFTQYPDNTVALY
VMWKALQILCTKGQEHGIVPHIPNFMLFLYSFFTAVLFHAGILEPKSLRP
SYYKFLQAISGDRLSKFNLSAFDVFGLSSQQQALDTIKALNIVEKSSLPA
YSFAS*

RE12402.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-PC 455 CG11737-PC 1..455 1..455 2357 100 Plus
CG11737-PB 455 CG11737-PB 1..455 1..455 2357 100 Plus
CG11737-PA 455 CG11737-PA 1..455 1..455 2357 100 Plus
CG31259-PB 455 CG31259-PB 1..452 1..452 1187 50.5 Plus
CG31259-PA 455 CG31259-PA 1..452 1..452 1187 50.5 Plus

RE12402.pep Sequence

Translation from 542 to 1909

> RE12402.pep
MAGQSKLIDPLCITCKEFQHPWTDHCVSATAGILLSATPYCLRVYTIVYA
LSLLMRHRIPSRDDLRKTLLGIIQSTAFLVTNAYTFILYNCALRHMLGRY
NFYTVAFVPCFLASFSAILVERPARRPLLTLYVANVATEALWKMAESRGW
VRSVPNGQTLIFGVSMAALLYIYRTGTTKDSIFNILRIFVGKEEAGPIVK
SGPAVPGEQPAPDRRRPTVSFSTVSDWVRVYSNLIRAKHESCRHQQSCIG
YSLMGGIKPFVGGVGLQVALKLVMNVKRITAGKMPWKKMIFNRGTLQLGI
FMGSFSFLYKSVSCLLRHSFNRDDARFAIPASLIASISFTQYPDNTVALY
VMWKALQILCTKGQEHGIVPHIPNFMLFLYSFFTAVLFHAGILEPKSLRP
SYYKFLQAISGDRLSKFNLSAFDVFGLSSQQQALDTIKALNIVEKSSLPA
YSFAS*

RE12402.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17244-PA 455 GF17244-PA 1..455 1..455 2100 83.3 Plus
Dana\GF17245-PA 455 GF17245-PA 1..453 1..453 1206 51.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10884-PA 454 GG10884-PA 1..454 1..455 2310 93.8 Plus
Dere\GG10970-PA 455 GG10970-PA 1..449 1..449 1185 50.2 Plus
Dere\GG10925-PA 455 GG10925-PA 1..451 1..451 1151 50.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17371-PA 455 GH17371-PA 1..455 1..455 1874 73.8 Plus
Dgri\GH17372-PA 454 GH17372-PA 1..448 1..449 1154 48.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11737-PC 455 CG11737-PC 1..455 1..455 2357 100 Plus
CG11737-PB 455 CG11737-PB 1..455 1..455 2357 100 Plus
CG11737-PA 455 CG11737-PA 1..455 1..455 2357 100 Plus
CG31259-PB 455 CG31259-PB 1..452 1..452 1187 50.5 Plus
CG31259-PA 455 CG31259-PA 1..452 1..452 1187 50.5 Plus
CG31454-PA 455 CG31454-PA 1..451 1..451 1096 48 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23914-PA 455 GI23914-PA 1..455 1..455 1947 76.7 Plus
Dmoj\GI23915-PA 455 GI23915-PA 1..449 1..449 1071 49.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22288-PA 541 GL22288-PA 1..310 1..310 1375 80.6 Plus
Dper\GL21411-PA 176 GL21411-PA 1..175 217..391 715 75.4 Plus
Dper\GL22288-PA 541 GL22288-PA 305..524 45..265 529 49.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11168-PA 455 GA11168-PA 1..455 1..455 2057 82.4 Plus
Dpse\GA16130-PA 455 GA16130-PA 1..451 1..451 1112 51.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23735-PA 455 GM23735-PA 1..455 1..455 2369 96.9 Plus
Dsec\GM23738-PA 455 GM23738-PA 1..453 1..453 1221 51.5 Plus
Dsec\GM23736-PA 228 GM23736-PA 1..211 1..206 527 51.2 Plus
Dsec\GM23737-PA 172 GM23737-PA 1..168 284..451 471 53 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18545-PA 455 GD18545-PA 1..455 1..455 2377 97.4 Plus
Dsim\GD18547-PA 455 GD18547-PA 1..452 1..452 1226 51.4 Plus
Dsim\GD18546-PA 455 GD18546-PA 1..451 1..451 1137 48.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24007-PA 455 GJ24007-PA 1..455 1..455 1940 76.3 Plus
Dvir\GJ24008-PA 452 GJ24008-PA 1..446 1..449 1153 51.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11588-PA 452 GK11588-PA 1..452 1..455 1934 77.6 Plus
Dwil\GK11589-PA 455 GK11589-PA 1..454 1..454 1170 49 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25880-PA 454 GE25880-PA 1..454 1..455 2333 94.5 Plus
Dyak\GE25882-PA 455 GE25882-PA 1..454 1..454 1202 50.3 Plus
Dyak\GE25881-PA 455 GE25881-PA 1..454 1..454 1151 49.9 Plus