BDGP Sequence Production Resources |
Search the DGRC for RE12402
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 124 |
Well: | 2 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11737-RA |
Protein status: | RE12402.pep: gold |
Preliminary Size: | 2107 |
Sequenced Size: | 2153 |
Gene | Date | Evidence |
---|---|---|
CG11737 | 2001-12-16 | Blastp of sequenced clone |
CG11737 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11737 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11737 | 2008-04-29 | Release 5.5 accounting |
CG11737 | 2008-08-15 | Release 5.9 accounting |
CG11737 | 2008-12-18 | 5.12 accounting |
2153 bp (2153 high quality bases) assembled on 2001-12-16
GenBank Submission: AY071037
> RE12402.complete AGGCAGAGGCGCAGTCGATAGCCATCAGTTCGCCTTATTATTGTTTACAA AGCGCAATTCCCGTCAAAATAAAGCTGATAAATTAGTGATTAAAGTCGCG CGTATACTAAAAAAAATGCAGTTTGTGGCCTGCTAAAGGGCGCAGCATTT GCTGCTCGACGGCAGCGGACTCAGAAAGCATTTATCACTCCGCCCAACCA CTTGTTGTTGTTGGACTCTGCCCGCCCCATACAACGCCATCCATTATCCA TTAAAATACCCCCGCCCGATTTCGCGTCCGTCGGTGAGGGGGACGAGGTC CAGAATCGGGGTAATCAGTGCGTTACACTCACATCTCAATCCGGTACTCC AGTCGGCGTCACTTTGTTGTCACATATTGTCAAATTCTCAACTCGAAGAG CTAGAAAAGTTGCAACTCTATAAATCTCAGACTGAACAAACATCAAACAG CGTATTAAGTAACCAATATTGGAAATCAAGGTGCGATTAGAGAGTGATTG CCGCCGTCAAGTGTCCAGTAGTTTCAGCATCTACATTCCAAAATGGCGGG ACAAAGCAAGCTGATCGATCCACTGTGCATCACTTGCAAGGAGTTCCAGC ACCCATGGACGGACCACTGCGTGAGCGCCACCGCCGGTATACTACTCTCG GCCACGCCCTACTGCCTGCGGGTCTACACAATAGTGTACGCCCTGTCCTT GCTGATGCGCCACCGCATTCCAAGTCGCGACGATCTGCGCAAGACGCTGC TAGGGATCATCCAATCGACGGCTTTTCTAGTTACTAATGCCTACACCTTT ATCCTGTACAACTGTGCGCTGCGGCACATGCTCGGGAGGTACAACTTCTA CACAGTGGCCTTTGTGCCCTGCTTTTTGGCCTCGTTTTCGGCCATTTTGG TTGAGAGACCAGCCCGCCGACCACTACTCACTCTCTACGTGGCCAATGTG GCCACTGAAGCGCTGTGGAAAATGGCAGAATCGAGGGGATGGGTGCGCTC CGTTCCTAATGGACAGACACTCATCTTTGGCGTGAGCATGGCGGCGCTGC TCTACATCTATCGTACTGGCACCACCAAGGATTCCATCTTCAACATCCTT CGCATTTTCGTGGGCAAGGAGGAGGCGGGGCCGATTGTCAAGTCCGGGCC CGCAGTGCCCGGTGAGCAGCCTGCGCCAGACCGCCGACGTCCCACCGTCA GTTTTTCGACTGTATCCGACTGGGTGCGCGTGTACAGCAATCTCATTCGC GCAAAACACGAAAGCTGTCGGCATCAACAGAGCTGCATTGGATACTCCCT GATGGGTGGAATTAAACCCTTTGTGGGTGGAGTGGGTCTTCAGGTTGCCC TTAAGCTGGTCATGAACGTCAAACGAATTACGGCTGGAAAAATGCCGTGG AAGAAGATGATCTTCAACCGTGGTACTCTACAACTGGGCATCTTCATGGG CAGCTTTTCATTTCTCTATAAGTCGGTGTCCTGCCTGCTGCGGCACAGTT TTAACCGGGACGATGCCAGATTTGCAATTCCAGCGTCGTTAATTGCCTCT ATATCCTTCACCCAGTATCCGGATAACACGGTAGCCCTGTATGTTATGTG GAAGGCGCTACAGATTCTTTGCACAAAGGGCCAAGAACATGGTATTGTGC CACACATCCCCAACTTTATGCTTTTCTTGTACTCCTTTTTCACGGCTGTG CTTTTCCATGCGGGAATATTGGAACCCAAGAGCCTGCGCCCCAGCTACTA CAAGTTTCTGCAGGCCATTTCGGGCGATCGACTGAGCAAGTTTAATCTGA GCGCCTTTGATGTATTCGGGCTGAGCAGTCAACAACAGGCGCTGGACACC ATCAAGGCACTGAACATAGTAGAAAAGTCATCGTTGCCGGCCTACTCCTT TGCCTCCTGAGCCAGCAGTAGTCAATTTTGATTTAGTCAGTCGCCTCCAC CAGAGGACCCTATATATCTCCTAGTATCCGCGTTCAGCTGCAAACTGTAT ATACATACGTCAAGAGTCTCCCGCGCTCAAAGAGCGCACAACGATTATTA AAATAAGCTAGTATGGGTGAAGTGTAAAATTTGTTGACCTTTTTTTATTT CGCGGCATTAATAAATCGTATAAAAAATATAAAAAGCAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4345563..4346506 | 529..1472 | 4675 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 4343821..4344348 | 1..528 | 2625 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 4346985..4347336 | 1780..2131 | 1760 | 100 | Plus |
chr3R | 27901430 | chr3R | 4346757..4346925 | 1612..1780 | 845 | 100 | Plus |
chr3R | 27901430 | chr3R | 4346559..4346701 | 1471..1613 | 715 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 8519606..8520549 | 529..1472 | 4720 | 100 | Plus |
3R | 32079331 | 3R | 8517864..8518391 | 1..528 | 2640 | 100 | Plus |
3R | 32079331 | 3R | 8521028..8521379 | 1780..2131 | 1760 | 100 | Plus |
3R | 32079331 | 3R | 8520800..8520968 | 1612..1780 | 845 | 100 | Plus |
3R | 32079331 | 3R | 8520602..8520744 | 1471..1613 | 715 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8260437..8261380 | 529..1472 | 4720 | 100 | Plus |
3R | 31820162 | 3R | 8258695..8259222 | 1..528 | 2640 | 100 | Plus |
3R | 31820162 | 3R | 8261859..8262210 | 1780..2131 | 1760 | 100 | Plus |
3R | 31820162 | 3R | 8261631..8261799 | 1612..1780 | 845 | 100 | Plus |
3R | 31820162 | 3R | 8261433..8261575 | 1471..1613 | 715 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4346561..4346701 | 1473..1613 | 100 | -> | Plus |
chr3R | 4346759..4346925 | 1614..1780 | 100 | -> | Plus |
chr3R | 4343821..4344348 | 1..528 | 99 | -> | Plus |
chr3R | 4345563..4346506 | 529..1472 | 99 | -> | Plus |
chr3R | 4346986..4347322 | 1781..2117 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11737-RA | 1..1368 | 543..1910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11737-RA | 1..1368 | 543..1910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11737-RB | 1..1368 | 543..1910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11737-RA | 1..1368 | 543..1910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11737-RA | 1..1368 | 543..1910 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11737-RA | 1..2133 | 1..2133 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11737-RA | 1..2133 | 1..2133 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11737-RA | 1..2130 | 1..2130 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11737-RA | 1..2133 | 1..2133 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11737-RA | 1..2126 | 5..2130 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8517864..8518391 | 1..528 | 100 | -> | Plus |
3R | 8519606..8520549 | 529..1472 | 100 | -> | Plus |
3R | 8520604..8520744 | 1473..1613 | 100 | -> | Plus |
3R | 8520802..8520968 | 1614..1780 | 100 | -> | Plus |
3R | 8521029..8521379 | 1781..2131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8517864..8518391 | 1..528 | 100 | -> | Plus |
3R | 8519606..8520549 | 529..1472 | 100 | -> | Plus |
3R | 8520604..8520744 | 1473..1613 | 100 | -> | Plus |
3R | 8520802..8520968 | 1614..1780 | 100 | -> | Plus |
3R | 8521029..8521379 | 1781..2131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8517864..8518391 | 1..528 | 100 | -> | Plus |
3R | 8519606..8520549 | 529..1472 | 100 | -> | Plus |
3R | 8520604..8520744 | 1473..1613 | 100 | -> | Plus |
3R | 8520802..8520968 | 1614..1780 | 100 | -> | Plus |
3R | 8521029..8521379 | 1781..2131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4343586..4344113 | 1..528 | 100 | -> | Plus |
arm_3R | 4345328..4346271 | 529..1472 | 100 | -> | Plus |
arm_3R | 4346326..4346466 | 1473..1613 | 100 | -> | Plus |
arm_3R | 4346524..4346690 | 1614..1780 | 100 | -> | Plus |
arm_3R | 4346751..4347101 | 1781..2131 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8258695..8259222 | 1..528 | 100 | -> | Plus |
3R | 8260437..8261380 | 529..1472 | 100 | -> | Plus |
3R | 8261435..8261575 | 1473..1613 | 100 | -> | Plus |
3R | 8261633..8261799 | 1614..1780 | 100 | -> | Plus |
3R | 8261860..8262210 | 1781..2131 | 100 | Plus |
Translation from 542 to 1909
> RE12402.hyp MAGQSKLIDPLCITCKEFQHPWTDHCVSATAGILLSATPYCLRVYTIVYA LSLLMRHRIPSRDDLRKTLLGIIQSTAFLVTNAYTFILYNCALRHMLGRY NFYTVAFVPCFLASFSAILVERPARRPLLTLYVANVATEALWKMAESRGW VRSVPNGQTLIFGVSMAALLYIYRTGTTKDSIFNILRIFVGKEEAGPIVK SGPAVPGEQPAPDRRRPTVSFSTVSDWVRVYSNLIRAKHESCRHQQSCIG YSLMGGIKPFVGGVGLQVALKLVMNVKRITAGKMPWKKMIFNRGTLQLGI FMGSFSFLYKSVSCLLRHSFNRDDARFAIPASLIASISFTQYPDNTVALY VMWKALQILCTKGQEHGIVPHIPNFMLFLYSFFTAVLFHAGILEPKSLRP SYYKFLQAISGDRLSKFNLSAFDVFGLSSQQQALDTIKALNIVEKSSLPA YSFAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11737-PC | 455 | CG11737-PC | 1..455 | 1..455 | 2357 | 100 | Plus |
CG11737-PB | 455 | CG11737-PB | 1..455 | 1..455 | 2357 | 100 | Plus |
CG11737-PA | 455 | CG11737-PA | 1..455 | 1..455 | 2357 | 100 | Plus |
CG31259-PB | 455 | CG31259-PB | 1..452 | 1..452 | 1187 | 50.5 | Plus |
CG31259-PA | 455 | CG31259-PA | 1..452 | 1..452 | 1187 | 50.5 | Plus |
Translation from 542 to 1909
> RE12402.pep MAGQSKLIDPLCITCKEFQHPWTDHCVSATAGILLSATPYCLRVYTIVYA LSLLMRHRIPSRDDLRKTLLGIIQSTAFLVTNAYTFILYNCALRHMLGRY NFYTVAFVPCFLASFSAILVERPARRPLLTLYVANVATEALWKMAESRGW VRSVPNGQTLIFGVSMAALLYIYRTGTTKDSIFNILRIFVGKEEAGPIVK SGPAVPGEQPAPDRRRPTVSFSTVSDWVRVYSNLIRAKHESCRHQQSCIG YSLMGGIKPFVGGVGLQVALKLVMNVKRITAGKMPWKKMIFNRGTLQLGI FMGSFSFLYKSVSCLLRHSFNRDDARFAIPASLIASISFTQYPDNTVALY VMWKALQILCTKGQEHGIVPHIPNFMLFLYSFFTAVLFHAGILEPKSLRP SYYKFLQAISGDRLSKFNLSAFDVFGLSSQQQALDTIKALNIVEKSSLPA YSFAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17244-PA | 455 | GF17244-PA | 1..455 | 1..455 | 2100 | 83.3 | Plus |
Dana\GF17245-PA | 455 | GF17245-PA | 1..453 | 1..453 | 1206 | 51.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10884-PA | 454 | GG10884-PA | 1..454 | 1..455 | 2310 | 93.8 | Plus |
Dere\GG10970-PA | 455 | GG10970-PA | 1..449 | 1..449 | 1185 | 50.2 | Plus |
Dere\GG10925-PA | 455 | GG10925-PA | 1..451 | 1..451 | 1151 | 50.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17371-PA | 455 | GH17371-PA | 1..455 | 1..455 | 1874 | 73.8 | Plus |
Dgri\GH17372-PA | 454 | GH17372-PA | 1..448 | 1..449 | 1154 | 48.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11737-PC | 455 | CG11737-PC | 1..455 | 1..455 | 2357 | 100 | Plus |
CG11737-PB | 455 | CG11737-PB | 1..455 | 1..455 | 2357 | 100 | Plus |
CG11737-PA | 455 | CG11737-PA | 1..455 | 1..455 | 2357 | 100 | Plus |
CG31259-PB | 455 | CG31259-PB | 1..452 | 1..452 | 1187 | 50.5 | Plus |
CG31259-PA | 455 | CG31259-PA | 1..452 | 1..452 | 1187 | 50.5 | Plus |
CG31454-PA | 455 | CG31454-PA | 1..451 | 1..451 | 1096 | 48 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23914-PA | 455 | GI23914-PA | 1..455 | 1..455 | 1947 | 76.7 | Plus |
Dmoj\GI23915-PA | 455 | GI23915-PA | 1..449 | 1..449 | 1071 | 49.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22288-PA | 541 | GL22288-PA | 1..310 | 1..310 | 1375 | 80.6 | Plus |
Dper\GL21411-PA | 176 | GL21411-PA | 1..175 | 217..391 | 715 | 75.4 | Plus |
Dper\GL22288-PA | 541 | GL22288-PA | 305..524 | 45..265 | 529 | 49.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11168-PA | 455 | GA11168-PA | 1..455 | 1..455 | 2057 | 82.4 | Plus |
Dpse\GA16130-PA | 455 | GA16130-PA | 1..451 | 1..451 | 1112 | 51.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23735-PA | 455 | GM23735-PA | 1..455 | 1..455 | 2369 | 96.9 | Plus |
Dsec\GM23738-PA | 455 | GM23738-PA | 1..453 | 1..453 | 1221 | 51.5 | Plus |
Dsec\GM23736-PA | 228 | GM23736-PA | 1..211 | 1..206 | 527 | 51.2 | Plus |
Dsec\GM23737-PA | 172 | GM23737-PA | 1..168 | 284..451 | 471 | 53 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18545-PA | 455 | GD18545-PA | 1..455 | 1..455 | 2377 | 97.4 | Plus |
Dsim\GD18547-PA | 455 | GD18547-PA | 1..452 | 1..452 | 1226 | 51.4 | Plus |
Dsim\GD18546-PA | 455 | GD18546-PA | 1..451 | 1..451 | 1137 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24007-PA | 455 | GJ24007-PA | 1..455 | 1..455 | 1940 | 76.3 | Plus |
Dvir\GJ24008-PA | 452 | GJ24008-PA | 1..446 | 1..449 | 1153 | 51.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11588-PA | 452 | GK11588-PA | 1..452 | 1..455 | 1934 | 77.6 | Plus |
Dwil\GK11589-PA | 455 | GK11589-PA | 1..454 | 1..454 | 1170 | 49 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25880-PA | 454 | GE25880-PA | 1..454 | 1..455 | 2333 | 94.5 | Plus |
Dyak\GE25882-PA | 455 | GE25882-PA | 1..454 | 1..454 | 1202 | 50.3 | Plus |
Dyak\GE25881-PA | 455 | GE25881-PA | 1..454 | 1..454 | 1151 | 49.9 | Plus |