Clone RE12569 Report

Search the DGRC for RE12569

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:125
Well:69
Vector:pFlc-1
Associated Gene/TranscriptCG10924-RA
Protein status:RE12569.pep: gold
Preliminary Size:2225
Sequenced Size:3457

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10924 2002-01-01 Sim4 clustering to Release 2
CG10924 2002-03-28 Blastp of sequenced clone
CG10924 2003-01-01 Sim4 clustering to Release 3
CG10924 2008-04-29 Release 5.5 accounting
CG10924 2008-08-15 Release 5.9 accounting
CG10924 2008-12-18 5.12 accounting

Clone Sequence Records

RE12569.complete Sequence

3457 bp (3457 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094852

> RE12569.complete
AGTTTGGCTCGTTGTGCCAGAGCAGCAACAAGTGCTCCGCTATATCTCAA
TCTGAATTTGAATCCAAATCCGAAACATAATCTGTTGCCGCGGCTGTAGC
TGAATACGAAGCGCAACAAGTGCGCCAGTGACATCCAGAAGCCAGTGCAT
TGCAGACGAGGCTGAGATAAATTTAAATTAGGTCCGCAATTTCATCAAAT
TAACAGCGGAACCCTGTGGCCCAACAAAGCGCAATAAATTAATTAAGACG
GAGATAAAATTGCAACTGCATTAGCTGCCAAGAGTATTAGCGGGCGAAAT
TAGAAAGTGAAAGCCAACACGAACAGGTGACAGAATGCTGCTCAAAGGCG
CACAGCTGCTGCGATGCGGATTGGTCTCACCACACCGGAACTCGAACTTC
CGCCTGACCTGTCGCTTCCTCTCCATTCAGTATGGAGATGCAAAGATCCT
CACCCCTGCCGTCAAACAGTACGTGGAAAAGTGCGTGGAGCTCTGCCAAC
CGGAAAGGGTGCACATCTGTGATGGTACTGAGGTCGAGAGCAAGTTGCTC
CAGGGCATCATGCTGAAGAAGGGAACCATCATTCCTCTGCCGAAGTACGA
GAATTGCTGGCTGGCAAGAACCAATCCGGCGGATGTGGCTAGAGTGGAGG
GAAAAACGTTCATCTCAACGGATTCGAAGGAGCAGACAGTACCGGTTACG
GAGAAGGCCACACCGGGAATGCTGGGTAACTGGATAGCCGAAAAGGACAT
GCAGGCGGCGATCAAGGAAAGATTCCCCGGCTGCATGAAAGGTCGCACCA
TGTATGTTATTCCTTTTAGCATGGGTCCAGTGGGCTCACCTCTCTCCAAA
ATCGGAATCGAGATCACAGACTCACCATACGTCGTCGAGTCCATGAAGAT
CATGACTAGGGCGGGCAATCCAGTGCTTAATTATCTGCAATCTGGGGATG
GTCAGTTTGTCAAGTGCCTGCATTCCGTGGGTACGCCCAAAAGTGGTGTC
CAGGCAATGCCATCCTGGCCCTGCGATCCCGAACGCACTATTGTGCTGCA
CAAGCCAGCAGAAAATGAGATTGTATCTTATGGATCTGGGTATGGTGGTA
ACTCCCTGCTGGGCAAGAAGTGCCTCGCTCTGAGGATTGGCAGCACCATT
GCCAAACGAGAGGGCTGGCTGGCCGAGCACATGTTGATACTGGGCATCAC
CAATCCGCAAGGTAAGAAGATCTACATAGCTGCCGCCTTTCCATCAGCTT
GCGGTAAGACCAACCTGGCGATGATGACTCCTACCCTGCCTGGCTACAAA
GTGGAGTGCGTGGGCGATGACATCGCCTGGATGAAGTTCGATAACAAGGG
TGTGCTGCGAGCGATTAATCCGGAGAATGGATTCTTTGGCGTGGCGCCCG
GAACGTCGAGGGCCACCAATCCCATAGCCATGGATACGATCTTCCGAAAC
TCTGTCTTTACGAACGTGGCCTCTACATCCGATGGAGGTGTCTACTGGGA
GGGAATGGAAAAGGATCAGCTGAAGGGGGTGACTGTCACGGACTGGTTGG
GTAAACTCTGGTCCCAGGAATCCGGAAAGCCAGCTGCCCATCCCAACTCC
AGGTTCTGTACACCCGCCTCTCAGTGTCCCATTATTGATCCCGCCTGGGA
GGATAGCGAAGGAGTGCCCATCTCCGCAATTCTTTTCGGAGGTCGTCGTC
CCAGTGGAGTTCCCTTGGTTTACGAGGCTCGAGACTGGAAGCACGGCGTA
TTTATTGGAGCTGCTATGAGGAGCGAGGCCACGGCAGCCGCTGAGTTCAA
GGGCAAGGTCATCATGCACGATCCCTTCGCCATGAGACCCTTTTTCGGCT
ACAACTTCGGCGACTATCTGGGTCACTGGCTAAGCATGGAGCAGCGTGGC
CAGGTGCCCAAGATCTTTCACGTAAATTGGTTCCGAAAGAGCAGTGAGGG
CAAGTTCCTTTGGCCCGGATTCGGGGAGAACTCACGAGTCCTGGACTGGA
TCTTCCGGCGGGTGGAGGGCGAGCAGTGCTTCGAGGACTCTCCCATTGGC
CGCCTGCCCAGCAAGAATTCATTGAACTTGGATAGTTTGGAAAACATTGA
TCTCGACCAGCTTTTCGATCTGCCAAAAGATTTCTGGGAGCAGGAGGTGG
CTGCCATAGAGAGGTACTTCGAGGAGCAGGTGGGCCACCATCTGCCAGGT
GCCGTGGCCGAGGAGCTGAGGGAGCTGAAGGCGCGTGTTGCTGACATGTG
ATGTGTGTGTTCCATAGGTTACTTCCTAATCTAAGACCCCTTATTGCCTA
AAATAAAACGAAACGAACGAGATTTTTATAGTGAAATTTGACTTGTGCCC
ATTCGAGAATGGAATTGGGATCGAAATTGGGTTTGGGGCGTGGCCTAGAC
GGGGCTTATCAGTGGTCGCCTCGGCGGAGGCCCGTCCGCAATTGGCGTAA
ACAAGCGTATAAATCCATAATGCCGTTTAACCTAACTTATCAACAGATCC
ACGCGATGAAAAACAAGCAAATAAATGCCAGAAAAAGCCAAAAAGAAAGT
AAAGTTTATGGGTGAACCTTTGCAATTTTCGGTGGGTTTCCAAGGACTGA
TTACTAAATTCAAAGCGTGTGGTGTGATGTACACTATGGGGTGAACAGCG
ATAAAAAGCCAATAAGCCAAGAAACCAAAAGGCAAAATAGCTAAGAAATC
GAATCCCTTAAAATAGTTCATGGGCAATGTAAAGATCCTCATAGTGATGT
TTTCCCTCGGAAAGTTTTCCTGGTCGACAGCACAAATCCGGGTCTGATCT
ATATTTAGACGAACTCAGAGGCTCGTCCACTGATAACCCGCCCGGCTCCC
TCCTCCCCATTGCCTTCTTCTCAACCAATCGCATTATTGATTATGCATAT
ATTTAGCGAGTCGATCGTCTATTGACGTAAATTCCAAATAAGCCCGAATC
ATCGAAATGCGCCAAGTGGCGGTTAGGTGAGAACAGGAGCGAGGCAGTTA
GAGTCTGAGTCCAAGTCCAAGTCTGGGTCCAGCAATTAATGCCGATGATG
AAGATTATCAGGCCCAACTAGAAAAACAAGTCCATAGTTATAAATAAACC
AATCGAAAATCACGGCAACGCGTGTAGACGAATTCGATTTAATTCGCAAC
TGGACTTTTCGTAAAGGGAGTCAAAAATGGGGACGGGGACTGTAAGAGGG
GGGAGCCAAGGACCAAGGACAACCATCTGATCAGGTTTCTCCAAGGACGT
TGGACGCCAGTCTCTTCTGGGTCTAGGCTAAGTGAGCGGCTTATTATAAT
TATTTAAAACAATTTTAATAAAAATTATATTTGGCCTATTTGTTATGAAG
TTGAATTAAGCTTGAAGTTTTAAATTAGAGTTGGCAAGCGTTTTAATTTA
ACATTATAAATAACACTGCTACCAAATAAATGTTTACGCAACCAATGAAA
AAAAAAA

RE12569.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10924-RA 3529 CG10924-RA 74..3525 1..3452 17215 99.9 Plus
CG10924-RB 3153 CG10924-RB 66..3149 369..3452 15375 99.9 Plus
CG10924.c 3156 CG10924.c 69..3152 369..3452 15375 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14419782..14422861 369..3447 14960 99.1 Plus
chr2R 21145070 chr2R 14425012..14426052 1009..2049 1905 78.9 Plus
chr2R 21145070 chr2R 14414543..14414911 1..369 1845 100 Plus
chr2R 21145070 chr2R 14424777..14424912 771..906 305 81.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:34:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18532671..18535754 369..3452 15375 99.9 Plus
2R 25286936 2R 18537900..18538940 1009..2049 1920 79 Plus
2R 25286936 2R 18527432..18527800 1..369 1845 100 Plus
2R 25286936 2R 18537665..18537800 771..906 320 82.4 Plus
2R 25286936 2R 18537481..18537533 587..639 190 90.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18533870..18536953 369..3452 15375 99.9 Plus
2R 25260384 2R 18528631..18528999 1..369 1845 100 Plus
2R 25260384 2R 18539626..18540139 1536..2049 1055 80.3 Plus
2R 25260384 2R 18539099..18539371 1009..1281 675 83.1 Plus
2R 25260384 2R 18538864..18538999 771..906 320 82.3 Plus
2R 25260384 2R 18539384..18539522 1294..1432 305 81.2 Plus
2R 25260384 2R 18538680..18538732 587..639 190 90.5 Plus
2R 25260384 2R 18539545..18539601 1455..1511 165 85.9 Plus
Blast to na_te.dros performed 2019-03-16 03:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 708..764 3279..3332 125 71.9 Plus

RE12569.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:09:16 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14414543..14414911 1..369 100 -> Plus
chr2R 14419783..14422861 370..3447 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:54:57 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 1..1917 335..2251 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:23:36 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 1..1917 335..2251 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:42:33 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 1..1917 335..2251 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:52 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 1..1917 335..2251 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:32:09 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 1..1917 335..2251 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:50:29 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 1..3447 1..3447 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:23:36 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 1..3447 1..3447 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:42:33 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 3..3449 1..3447 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:52 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 1..3447 1..3447 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:32:09 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 3..3449 1..3447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:09:16 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18527432..18527800 1..369 100 -> Plus
2R 18532672..18535749 370..3447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:09:16 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18527432..18527800 1..369 100 -> Plus
2R 18532672..18535749 370..3447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:09:16 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18527432..18527800 1..369 100 -> Plus
2R 18532672..18535749 370..3447 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:42:33 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14414937..14415305 1..369 100 -> Plus
arm_2R 14420177..14423254 370..3447 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:48 Download gff for RE12569.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18528631..18528999 1..369 100 -> Plus
2R 18533871..18536948 370..3447 99   Plus

RE12569.hyp Sequence

Translation from 334 to 2250

> RE12569.hyp
MLLKGAQLLRCGLVSPHRNSNFRLTCRFLSIQYGDAKILTPAVKQYVEKC
VELCQPERVHICDGTEVESKLLQGIMLKKGTIIPLPKYENCWLARTNPAD
VARVEGKTFISTDSKEQTVPVTEKATPGMLGNWIAEKDMQAAIKERFPGC
MKGRTMYVIPFSMGPVGSPLSKIGIEITDSPYVVESMKIMTRAGNPVLNY
LQSGDGQFVKCLHSVGTPKSGVQAMPSWPCDPERTIVLHKPAENEIVSYG
SGYGGNSLLGKKCLALRIGSTIAKREGWLAEHMLILGITNPQGKKIYIAA
AFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDNKGVLRAINPENGF
FGVAPGTSRATNPIAMDTIFRNSVFTNVASTSDGGVYWEGMEKDQLKGVT
VTDWLGKLWSQESGKPAAHPNSRFCTPASQCPIIDPAWEDSEGVPISAIL
FGGRRPSGVPLVYEARDWKHGVFIGAAMRSEATAAAEFKGKVIMHDPFAM
RPFFGYNFGDYLGHWLSMEQRGQVPKIFHVNWFRKSSEGKFLWPGFGENS
RVLDWIFRRVEGEQCFEDSPIGRLPSKNSLNLDSLENIDLDQLFDLPKDF
WEQEVAAIERYFEEQVGHHLPGAVAEELRELKARVADM*

RE12569.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10924-PA 638 CG10924-PA 1..638 1..638 3416 100 Plus
CG10924-PB 563 CG10924-PB 1..563 76..638 3022 100 Plus
Pepck-PA 647 CG17725-PA 16..647 11..638 2447 70 Plus

RE12569.pep Sequence

Translation from 334 to 2250

> RE12569.pep
MLLKGAQLLRCGLVSPHRNSNFRLTCRFLSIQYGDAKILTPAVKQYVEKC
VELCQPERVHICDGTEVESKLLQGIMLKKGTIIPLPKYENCWLARTNPAD
VARVEGKTFISTDSKEQTVPVTEKATPGMLGNWIAEKDMQAAIKERFPGC
MKGRTMYVIPFSMGPVGSPLSKIGIEITDSPYVVESMKIMTRAGNPVLNY
LQSGDGQFVKCLHSVGTPKSGVQAMPSWPCDPERTIVLHKPAENEIVSYG
SGYGGNSLLGKKCLALRIGSTIAKREGWLAEHMLILGITNPQGKKIYIAA
AFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDNKGVLRAINPENGF
FGVAPGTSRATNPIAMDTIFRNSVFTNVASTSDGGVYWEGMEKDQLKGVT
VTDWLGKLWSQESGKPAAHPNSRFCTPASQCPIIDPAWEDSEGVPISAIL
FGGRRPSGVPLVYEARDWKHGVFIGAAMRSEATAAAEFKGKVIMHDPFAM
RPFFGYNFGDYLGHWLSMEQRGQVPKIFHVNWFRKSSEGKFLWPGFGENS
RVLDWIFRRVEGEQCFEDSPIGRLPSKNSLNLDSLENIDLDQLFDLPKDF
WEQEVAAIERYFEEQVGHHLPGAVAEELRELKARVADM*

RE12569.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11970-PA 639 GF11970-PA 1..639 1..638 2883 81.5 Plus
Dana\GF11971-PA 647 GF11971-PA 16..647 11..638 2499 71.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21903-PA 639 GG21903-PA 1..639 1..638 3313 96.2 Plus
Dere\GG21904-PA 647 GG21904-PA 16..647 11..638 2461 70 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22961-PA 639 GH22961-PA 1..639 1..638 2953 84.4 Plus
Dgri\GH22963-PA 647 GH22963-PA 16..647 11..638 2475 71.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Pepck2-PA 638 CG10924-PA 1..638 1..638 3416 100 Plus
Pepck2-PB 563 CG10924-PB 1..563 76..638 3022 100 Plus
Pepck1-PA 647 CG17725-PA 16..647 11..638 2447 70 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18449-PA 639 GI18449-PA 1..639 1..638 2965 84.8 Plus
Dmoj\GI18450-PA 647 GI18450-PA 36..647 27..638 2435 71.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17082-PA 639 GL17082-PA 1..639 1..638 3037 87 Plus
Dper\GL17083-PA 498 GL17083-PA 87..498 230..638 1632 71.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10647-PA 639 GA10647-PA 1..639 1..638 3039 87.2 Plus
Dpse\GA14628-PA 647 GA14628-PA 16..647 11..638 2480 70.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21894-PA 639 GM21894-PA 1..639 1..638 3357 97.5 Plus
Dsec\GM21895-PA 647 GM21895-PA 16..647 11..638 2468 70 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11391-PA 639 GD11391-PA 1..639 1..638 3368 98.3 Plus
Dsim\GD11392-PA 647 GD11392-PA 16..647 11..638 2478 70.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21534-PA 639 GJ21534-PA 1..639 1..638 2979 85.6 Plus
Dvir\GJ21535-PA 647 GJ21535-PA 16..647 11..638 2486 71.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17956-PA 641 GK17956-PA 1..641 1..638 2901 82.8 Plus
Dwil\GK17957-PA 647 GK17957-PA 16..647 11..638 2504 71.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11979-PA 639 GE11979-PA 1..639 1..638 3327 96.9 Plus
Dyak\GE11980-PA 647 GE11980-PA 16..647 11..638 2486 70.8 Plus