Clone RE12890 Report

Search the DGRC for RE12890

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:128
Well:90
Vector:pFlc-1
Associated Gene/TranscriptCG32243-RA
Protein status:RE12890.pep: gold
Sequenced Size:1649

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7525 2002-01-01 Sim4 clustering to Release 2
CG32243 2002-04-22 Blastp of sequenced clone
CG32243 2003-01-01 Sim4 clustering to Release 3
CG32243 2008-04-29 Release 5.5 accounting
CG32243 2008-08-15 Release 5.9 accounting
CG32243 2008-12-18 5.12 accounting

Clone Sequence Records

RE12890.complete Sequence

1649 bp (1649 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113406

> RE12890.complete
GTTGTAACTTCCATCTTCTACGTGCAACAGAAGAAGTTCTAGAAATAAGC
AGGAATAAAAGTTTGCAAAAATGAGTGCTCCAAAAGGGGACGGAAACTTA
GTTCCCACAGTCAGAGAAGTGCAGCAAAAGTTTGCCGACATCCTGGGCCA
TGGCAACGATATAACCTGGGATCTAATATCGTCGGGTCAAGAAAACATAT
TGAAGGCAAAGCTGTCTCTGCTGAATTTCGATTCTAACATGTTTCATGCG
ATCTGGAGTTATAGAAAATACTCCAAAGGGCAGTCACTCACGTCTTTATT
TTTTGTGATGGTTGTCAATAATGTATATGATCCCAAGCTGGCCGAAGAAA
GTAGATCCTGGCGCCTGTATCCGGTGTTTCGATGCCGACGATGCGTGGAT
GAAACTGGACATTCCAGCAACATTGACTGTTGCATGTCATATGTGTCACA
GTACTCAATGTCTGATTCCTGGAACCGATTTGTGACCCATACGGGGTTTG
CCGCAGGTCTAATGGTCACCCCGTATCTTGGAGTTTACAAGCAAACCGAT
GGTCGCGTTGAGCTAAAAACGTATACTACCACTCAGATATGGCACCCAAA
TAAGAAAGATATACCAATAACACCCGAATCGTTGAAAAAAGCATCCAGTG
TGACTAATAAACTTAGAAAAATCATCATACATTCAGTTCCATTTCTGGTT
TATCCTGAAGAGGTTTTCGACTTCTGCGCCAGTGAAAAGATGCTTTCGTC
GATTTTGAATCCTCATAGTTCTACACAATCTGGTGATGTGGCTGGTCTAT
CCGATTCCTTAGTATTATTTACGAATAATCTGTACAATTCACGCCTTGAA
TCGCTGATGAATAATAATAATAATGATCCCAGCATTTTTGTTAATCAGCA
ACGATCGGCGTGGGATAAGATTGCTAGGGAATCATTTAAAATTGAGGGAA
ATGTGAATCTCATTCGTTGTTGCAATGGAGTGCCCTCAATACCGAAGCTG
GATAAAATATTTCAGCCCATTGATAGCAAGATCAAGAAATCAAAAAAGGT
TGTGGAGGCTGAAAAACCAGAAAATACTCCAAGTGATCTTCCAGAAATAG
AAATAGATTTATCTATTAAAGTCAAGGGGCAGGAAATAAACCTGCGAGAA
TACGGAACCCAACTCAAGAAACATATTGCAAGCTCAGAGAGCTTCGACAT
TTTGATAAGTAGAATGTCAGAGCATTTGGAAGTCGACACTTTTAAGCTTA
TAATGGCGCTAACGCAAACATTTGTGGAAACTGTGAGGGAGGAAATGTGC
CAAATGCTAAAATATTATTTTCCCACGGAATCCATTCTATATCAGATAAT
ACTGTGCATAAGTAAGCACCATCCAAAGTGGGACTTCAATGAAATTGAAG
AGCATTCGTCGGATATTTTGAGGCGCGTACGAATGTTTTTTGTTTCTACT
GGACCGAATCCCTATGCTGAATTTTTAAAGAAATGTGAAGTATGTCCTGG
ATACTACGACATATGCAAATCGACTTAAAACAATATTTTGTATTACCTTA
CCTTATGTGAATTCCACTGCCTTACGATCATATAATAAAAGCCAAATATA
CACAATGTATATCCTTTAAAGAAGGACCATTCCAAAAAAAAAAAAAAAA

RE12890.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-RA 1733 CG32243-RA 87..1721 1..1635 8160 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4538616..4539346 1633..903 3655 100 Minus
chr3L 24539361 chr3L 4539609..4539968 757..398 1800 100 Minus
chr3L 24539361 chr3L 4540379..4540552 174..1 855 99.4 Minus
chr3L 24539361 chr3L 4539399..4539545 903..757 735 100 Minus
chr3L 24539361 chr3L 4540027..4540161 398..264 675 100 Minus
chr3L 24539361 chr3L 4540236..4540325 264..175 450 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:34:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4539300..4540032 1635..903 3665 100 Minus
3L 28110227 3L 4540295..4540654 757..398 1800 100 Minus
3L 28110227 3L 4541065..4541238 174..1 855 99.4 Minus
3L 28110227 3L 4540085..4540231 903..757 735 100 Minus
3L 28110227 3L 4540713..4540847 398..264 675 100 Minus
3L 28110227 3L 4540922..4541011 264..175 450 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4539300..4540032 1635..903 3665 100 Minus
3L 28103327 3L 4540295..4540654 757..398 1800 100 Minus
3L 28103327 3L 4541065..4541238 174..1 855 99.4 Minus
3L 28103327 3L 4540085..4540231 903..757 735 100 Minus
3L 28103327 3L 4540713..4540847 398..264 675 100 Minus
3L 28103327 3L 4540922..4541011 264..175 450 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:40:23 has no hits.

RE12890.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:41:00 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4538616..4539345 904..1633 100 <- Minus
chr3L 4539399..4539544 758..903 100 <- Minus
chr3L 4539609..4539967 399..757 100 <- Minus
chr3L 4540027..4540161 264..398 100 <- Minus
chr3L 4540237..4540325 175..263 100 <- Minus
chr3L 4540379..4540552 1..174 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:55:07 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 1..1458 71..1528 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:59:18 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 1..1458 71..1528 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:37:29 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 1..1458 71..1528 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:52:36 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 1..1458 71..1528 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:08 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 1..1458 71..1528 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:39:59 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 1..1633 1..1633 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:59:18 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 1..1633 1..1633 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:29 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 7..1639 1..1633 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:52:36 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 1..1633 1..1633 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:08 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 7..1639 1..1633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:41:00 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4539302..4540031 904..1633 100 <- Minus
3L 4540085..4540230 758..903 100 <- Minus
3L 4540295..4540653 399..757 100 <- Minus
3L 4540713..4540847 264..398 100 <- Minus
3L 4540923..4541011 175..263 100 <- Minus
3L 4541065..4541238 1..174 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:41:00 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4539302..4540031 904..1633 100 <- Minus
3L 4540085..4540230 758..903 100 <- Minus
3L 4540295..4540653 399..757 100 <- Minus
3L 4540713..4540847 264..398 100 <- Minus
3L 4540923..4541011 175..263 100 <- Minus
3L 4541065..4541238 1..174 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:41:00 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4539302..4540031 904..1633 100 <- Minus
3L 4540085..4540230 758..903 100 <- Minus
3L 4540295..4540653 399..757 100 <- Minus
3L 4540713..4540847 264..398 100 <- Minus
3L 4540923..4541011 175..263 100 <- Minus
3L 4541065..4541238 1..174 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:29 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4540923..4541011 175..263 100 <- Minus
arm_3L 4541065..4541238 1..174 99   Minus
arm_3L 4539302..4540031 904..1633 100 <- Minus
arm_3L 4540085..4540230 758..903 100 <- Minus
arm_3L 4540295..4540653 399..757 100 <- Minus
arm_3L 4540713..4540847 264..398 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:24:43 Download gff for RE12890.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4540923..4541011 175..263 100 <- Minus
3L 4541065..4541238 1..174 99   Minus
3L 4539302..4540031 904..1633 100 <- Minus
3L 4540085..4540230 758..903 100 <- Minus
3L 4540295..4540653 399..757 100 <- Minus
3L 4540713..4540847 264..398 100 <- Minus

RE12890.pep Sequence

Translation from 70 to 1527

> RE12890.pep
MSAPKGDGNLVPTVREVQQKFADILGHGNDITWDLISSGQENILKAKLSL
LNFDSNMFHAIWSYRKYSKGQSLTSLFFVMVVNNVYDPKLAEESRSWRLY
PVFRCRRCVDETGHSSNIDCCMSYVSQYSMSDSWNRFVTHTGFAAGLMVT
PYLGVYKQTDGRVELKTYTTTQIWHPNKKDIPITPESLKKASSVTNKLRK
IIIHSVPFLVYPEEVFDFCASEKMLSSILNPHSSTQSGDVAGLSDSLVLF
TNNLYNSRLESLMNNNNNDPSIFVNQQRSAWDKIARESFKIEGNVNLIRC
CNGVPSIPKLDKIFQPIDSKIKKSKKVVEAEKPENTPSDLPEIEIDLSIK
VKGQEINLREYGTQLKKHIASSESFDILISRMSEHLEVDTFKLIMALTQT
FVETVREEMCQMLKYYFPTESILYQIILCISKHHPKWDFNEIEEHSSDIL
RRVRMFFVSTGPNPYAEFLKKCEVCPGYYDICKST*

RE12890.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18460-PA 579 GF18460-PA 331..577 239..482 295 28.7 Plus
Dana\GF24280-PA 688 GF24280-PA 536..687 331..483 267 32 Plus
Dana\GF24280-PA 688 GF24280-PA 1..210 1..170 248 30.8 Plus
Dana\GF10100-PA 576 GF10100-PA 4..161 13..160 222 30.9 Plus
Dana\GF10100-PA 576 GF10100-PA 331..567 239..478 218 28.2 Plus
Dana\GF18460-PA 579 GF18460-PA 8..172 13..170 210 32.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14175-PA 483 GG14175-PA 1..483 1..485 1716 68.6 Plus
Dere\GG14972-PA 661 GG14972-PA 9..197 13..170 289 36.5 Plus
Dere\GG14972-PA 661 GG14972-PA 525..659 348..482 287 38.5 Plus
Dere\GG13601-PA 587 GG13601-PA 329..584 229..481 199 25.4 Plus
Dere\GG13601-PA 587 GG13601-PA 12..168 13..159 191 29.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15907-PA 560 GH15907-PA 17..183 13..170 267 39.5 Plus
Dgri\GH15907-PA 560 GH15907-PA 336..558 239..482 234 26.6 Plus
Dgri\GH15525-PA 581 GH15525-PA 1..163 10..159 202 28.7 Plus
Dgri\GH24268-PA 604 GH24268-PA 7..202 16..178 184 26.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-PA 485 CG32243-PA 1..485 1..485 2553 100 Plus
pst-PG 682 CG8588-PG 6..201 6..170 288 33.7 Plus
pst-PE 682 CG8588-PE 6..201 6..170 288 33.7 Plus
pst-PF 707 CG8588-PF 6..226 6..170 252 29.9 Plus
pst-PG 682 CG8588-PG 546..680 348..482 251 34.8 Plus
pst-PE 682 CG8588-PE 546..680 348..482 251 34.8 Plus
pst-PF 707 CG8588-PF 571..705 348..482 251 34.8 Plus
CG7730-PC 581 CG7730-PC 339..578 239..481 199 26.6 Plus
CG7730-PC 581 CG7730-PC 12..168 13..159 194 30.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16559-PA 686 GI16559-PA 11..230 13..209 295 32.8 Plus
Dmoj\GI16559-PA 686 GI16559-PA 505..684 302..482 239 30.8 Plus
Dmoj\GI16802-PA 572 GI16802-PA 1..176 10..170 218 29.8 Plus
Dmoj\GI21425-PA 580 GI21425-PA 1..205 10..208 200 27.6 Plus
Dmoj\GI21425-PA 580 GI21425-PA 329..578 237..482 187 23.8 Plus
Dmoj\GI16802-PA 572 GI16802-PA 328..570 239..482 157 22 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25254-PA 379 GL25254-PA 8..157 13..168 428 52.8 Plus
Dper\GL25254-PA 379 GL25254-PA 179..363 292..480 412 45 Plus
Dper\GL24331-PA 681 GL24331-PA 527..680 331..483 313 38.3 Plus
Dper\GL24331-PA 681 GL24331-PA 14..202 13..170 289 36 Plus
Dper\GL16193-PA 560 GL16193-PA 312..557 239..481 200 26.4 Plus
Dper\GL10393-PA 579 GL10393-PA 331..576 239..481 196 25.6 Plus
Dper\GL16193-PA 560 GL16193-PA 1..183 1..170 194 27.3 Plus
Dper\GL10393-PA 579 GL10393-PA 7..174 16..170 177 27.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23741-PA 391 GA23741-PA 8..173 13..167 421 50.3 Plus
Dpse\GA23741-PA 391 GA23741-PA 169..375 274..480 420 42.7 Plus
Dpse\GA21184-PA 681 GA21184-PA 527..680 331..483 317 39 Plus
Dpse\GA21184-PA 681 GA21184-PA 14..202 13..170 289 36 Plus
Dpse\GA24960-PA 588 GA24960-PA 340..585 239..481 202 26 Plus
Dpse\GA28419-PA 588 GA28419-PA 340..585 239..481 196 25.6 Plus
Dpse\GA28419-PA 588 GA28419-PA 1..183 1..170 193 26.7 Plus
Dpse\GA24960-PA 588 GA24960-PA 1..183 1..170 180 26.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13964-PA 479 GM13964-PA 1..479 1..485 2099 81.6 Plus
Dsec\GM13765-PA 233 GM13765-PA 1..201 1..170 290 33.8 Plus
Dsec\GM13767-PA 325 GM13767-PA 173..323 331..482 282 34.2 Plus
Dsec\GM25682-PA 581 GM25682-PA 339..578 239..481 198 26.2 Plus
Dsec\GM25682-PA 581 GM25682-PA 12..168 13..159 198 30.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13247-PA 482 GD13247-PA 1..482 1..485 2147 83.5 Plus
Dsim\GD13388-PA 208 GD13388-PA 1..185 39..223 796 78.9 Plus
Dsim\GD13064-PA 682 GD13064-PA 1..201 1..170 285 33.8 Plus
Dsim\GD13064-PA 682 GD13064-PA 530..680 331..482 275 32.9 Plus
Dsim\GD14687-PA 581 GD14687-PA 339..578 239..481 199 26.2 Plus
Dsim\GD14687-PA 581 GD14687-PA 12..168 13..159 197 30.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12811-PA 694 GJ12811-PA 27..211 13..170 323 39.2 Plus
Dvir\GJ12811-PA 694 GJ12811-PA 558..692 348..482 229 30.4 Plus
Dvir\GJ16442-PA 583 GJ16442-PA 1..185 10..178 203 27.8 Plus
Dvir\GJ12547-PA 572 GJ12547-PA 1..176 10..170 195 27 Plus
Dvir\GJ16442-PA 583 GJ16442-PA 332..581 239..482 174 21.8 Plus
Dvir\GJ12547-PA 572 GJ12547-PA 326..570 237..482 174 22.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25321-PA 588 GK25321-PA 9..183 13..157 230 31.2 Plus
Dwil\GK20460-PA 587 GK20460-PA 336..586 239..483 204 25.1 Plus
Dwil\GK20460-PA 587 GK20460-PA 7..162 16..156 196 29.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20602-PA 484 GE20602-PA 1..484 1..485 1733 68.4 Plus
Dyak\pst-PA 666 GE20418-PA 13..199 13..170 279 34.8 Plus
Dyak\pst-PA 666 GE20418-PA 528..663 348..481 263 37.5 Plus
Dyak\GE19896-PA 587 GE19896-PA 12..165 13..156 196 31 Plus
Dyak\GE19896-PA 587 GE19896-PA 329..584 229..481 196 25.4 Plus

RE12890.hyp Sequence

Translation from 70 to 1527

> RE12890.hyp
MSAPKGDGNLVPTVREVQQKFADILGHGNDITWDLISSGQENILKAKLSL
LNFDSNMFHAIWSYRKYSKGQSLTSLFFVMVVNNVYDPKLAEESRSWRLY
PVFRCRRCVDETGHSSNIDCCMSYVSQYSMSDSWNRFVTHTGFAAGLMVT
PYLGVYKQTDGRVELKTYTTTQIWHPNKKDIPITPESLKKASSVTNKLRK
IIIHSVPFLVYPEEVFDFCASEKMLSSILNPHSSTQSGDVAGLSDSLVLF
TNNLYNSRLESLMNNNNNDPSIFVNQQRSAWDKIARESFKIEGNVNLIRC
CNGVPSIPKLDKIFQPIDSKIKKSKKVVEAEKPENTPSDLPEIEIDLSIK
VKGQEINLREYGTQLKKHIASSESFDILISRMSEHLEVDTFKLIMALTQT
FVETVREEMCQMLKYYFPTESILYQIILCISKHHPKWDFNEIEEHSSDIL
RRVRMFFVSTGPNPYAEFLKKCEVCPGYYDICKST*

RE12890.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-PA 485 CG32243-PA 1..485 1..485 2553 100 Plus
pst-PG 682 CG8588-PG 6..201 6..170 288 33.7 Plus
pst-PE 682 CG8588-PE 6..201 6..170 288 33.7 Plus
pst-PF 707 CG8588-PF 6..226 6..170 252 29.9 Plus
pst-PG 682 CG8588-PG 546..680 348..482 251 34.8 Plus
pst-PE 682 CG8588-PE 546..680 348..482 251 34.8 Plus
pst-PF 707 CG8588-PF 571..705 348..482 251 34.8 Plus
CG7730-PC 581 CG7730-PC 339..578 239..481 199 26.6 Plus