BDGP Sequence Production Resources |
Search the DGRC for RE12958
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 129 |
Well: | 58 |
Vector: | pFlc-1 |
Associated Gene/Transcript | dap-RA |
Protein status: | RE12958.pep: gold |
Sequenced Size: | 1670 |
Gene | Date | Evidence |
---|---|---|
dap-ra | 2010-04-28 | Manual selection by Sue Celniker |
1670 bp assembled on 2010-08-13
GenBank Submission: BT125118.1
> RE12958.complete CGTGAAATTTCACTTTTGAACGCAGCAAGACGTAAAATAAGCTGCAGCAC AACGCACACACAGAACACTCGCTCTCCCTCTCACATACACACACGCTCGC GTGTGGAGACCGTGATTTGTATTCGTGTGGAGACTGCCTCTCTCTCTTTT GGGGCTGTCTGAACACAAAGTTTTGGCGCCAAAAGTTTGACAGTTCGCTT TGGCGTGTAATTCGCAAACAAGTGGCAAGAAAAGTGCGTCTCAAAACAGA GTAGAAAACACTAGGGGATCCCAAAAAAATATATATTGACTCAACATGGT CAGTGCCCGAGTCCTGAATCCTGTGATGATCAGTGAGTTCTGCAAGATGA GCAGCAGCCCGGCGGTGAGTCGCAATCTGGCATGCGGTCGTCAGTTGAAT CGCATAAAGCGTGACCTCTTCGGTAGCTCCAAATCCGCCGAGGGTACAGC CAACAAAACACCCTTTAATTCCGAACTGGAGCGCCATCAAGAACTGGCCA CGCAAAAATGGGGCTTTGACTTCCGCGCCGGCTGCCCTTTAGCTGAAAAA TCACCCTACATTTGGGAGCGCGTCAGCTTCCAGGAGTCGAGCTTCGCCCC AGAGATGTACACCCTAACACGGGCCGCCCACGTACGCCCTTCCGCGGATG CAAGTCCTAGCGACATGGACATTTTGGTCAACGAGCGCTCAGAACGGGAG AACTTTGGCTCCAATCTGGTCAATTCCTCGCTAGAGTCGAACACGGATAA TGAATCTTGTTACGACTCCCAGGACGAGTCGCTGGCAATGCGGCTTAGCT CCTCCAGCACGACAAGCACATCCTCCATAGTCCTGCGCAAGAGACAGCCA AAAATCACAGAATTCATGAAGGAGCGCAAACGTCTGGCCCAGGCACCCAA GAAACTATCGCCCGCAAAGCGCATGCGCACCAGTTCTCCCAGTTCGTCCG CCACTTCCAGCTCCAGCTCCAGCGGTGGATTTGGGTTGGGGGCACACTTT GGGGCGATGTTGAAGCGGCCGCGCCACAACTAATGCTCCAGATTCGCTGG CCAACCCACCGAATTGCAATTTGTAATTTTATTTTTTACAAGCCACTGCG ATTGTGTAGTATTTCCTAATTTTTTATTACGAACCTTTTTATGCAGTGCA AGGGCGACAGTTGCGAATATTAATCGTTAGTCTTCAACTACTCGTAACCA GTAATTAGTTGTAAGTCAACCAGTAAGCTCGAGCTAAATGAAACTTTTTA GATTTCTCTAGTGAGAAATGCCATAAACTAAGTGATTAGTTCTTAACAAC AAACAACTATTGAACAAGAAGAGAGAGACCGCAAGCTAAATGGAATTAGT CTTAACTATCTTGAAGCCAACCGAAATTTAACCTTTATAACGATGGAATA CTAACTTTACATAACTTTGTGAAATCCTTGCAAATTTCGCCGGCAACTTT TGCATTTGAAATTTGCCGGGTGAACAAAACTCATCCTTTCTCTGCCCTGC CACTTCATCCAAGTACTGAAACTGAGGGGAGAGTAGAATTGAGTTTTGTC TTGCATATTAAGGGCGCCAAAACGATGCCCCAATAAGCCGCATTTCGGCT CATTGCTGCTTTGTTTTTGCGACCTACTAACATTGTAACCAATTCGACCA GTGGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5602357..5603154 | 857..1654 | 3990 | 100 | Plus |
chr2R | 21145070 | chr2R | 5600095..5600553 | 1..459 | 2295 | 100 | Plus |
chr2R | 21145070 | chr2R | 5600613..5601013 | 460..860 | 2005 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5600095..5600553 | 1..459 | 100 | -> | Plus |
chr2R | 5600613..5601013 | 460..860 | 100 | -> | Plus |
chr2R | 5602361..5603154 | 861..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dap-RA | 1..738 | 296..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dap-RA | 1..738 | 296..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dap-RA | 1..738 | 296..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dap-RA | 1..738 | 296..1033 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dap-RA | 323..1976 | 1..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dap-RA | 323..1976 | 1..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dap-RA | 325..1978 | 1..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
dap-RA | 325..1978 | 1..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9712645..9713103 | 1..459 | 100 | -> | Plus |
2R | 9713163..9713563 | 460..860 | 100 | -> | Plus |
2R | 9714911..9715704 | 861..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9712645..9713103 | 1..459 | 100 | -> | Plus |
2R | 9713163..9713563 | 460..860 | 100 | -> | Plus |
2R | 9714911..9715704 | 861..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9712645..9713103 | 1..459 | 100 | -> | Plus |
2R | 9713163..9713563 | 460..860 | 100 | -> | Plus |
2R | 9714911..9715704 | 861..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5600150..5600608 | 1..459 | 100 | -> | Plus |
arm_2R | 5600668..5601068 | 460..860 | 100 | -> | Plus |
arm_2R | 5602416..5603209 | 861..1654 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9713844..9714302 | 1..459 | 100 | -> | Plus |
2R | 9714362..9714762 | 460..860 | 100 | -> | Plus |
2R | 9716110..9716903 | 861..1654 | 100 | Plus |
Translation from 295 to 1032
> RE12958.hyp MVSARVLNPVMISEFCKMSSSPAVSRNLACGRQLNRIKRDLFGSSKSAEG TANKTPFNSELERHQELATQKWGFDFRAGCPLAEKSPYIWERVSFQESSF APEMYTLTRAAHVRPSADASPSDMDILVNERSERENFGSNLVNSSLESNT DNESCYDSQDESLAMRLSSSSTTSTSSIVLRKRQPKITEFMKERKRLAQA PKKLSPAKRMRTSSPSSSATSSSSSSGGFGLGAHFGAMLKRPRHN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
dap-PA | 245 | CG1772-PA | 1..245 | 1..245 | 1242 | 100 | Plus |
Translation from 295 to 1032
> RE12958.pep MVSARVLNPVMISEFCKMSSSPAVSRNLACGRQLNRIKRDLFGSSKSAEG TANKTPFNSELERHQELATQKWGFDFRAGCPLAEKSPYIWERVSFQESSF APEMYTLTRAAHVRPSADASPSDMDILVNERSERENFGSNLVNSSLESNT DNESCYDSQDESLAMRLSSSSTTSTSSIVLRKRQPKITEFMKERKRLAQA PKKLSPAKRMRTSSPSSSATSSSSSSGGFGLGAHFGAMLKRPRHN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13384-PA | 237 | GF13384-PA | 1..237 | 1..245 | 988 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24100-PA | 245 | GG24100-PA | 1..245 | 1..245 | 1138 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22938-PA | 233 | GH22938-PA | 1..233 | 1..245 | 644 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
dap-PA | 245 | CG1772-PA | 1..245 | 1..245 | 1242 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18426-PA | 253 | GI18426-PA | 1..253 | 1..245 | 551 | 53.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17154-PA | 244 | GL17154-PA | 1..244 | 1..245 | 948 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14624-PA | 244 | GA14624-PA | 1..244 | 1..245 | 942 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21147-PA | 195 | GM21147-PA | 1..192 | 1..192 | 984 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10678-PA | 243 | GD10678-PA | 1..243 | 1..245 | 1245 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\dap-PA | 251 | GJ21511-PA | 1..251 | 1..245 | 652 | 59.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15955-PA | 213 | GK15955-PA | 2..213 | 24..245 | 695 | 66.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19298-PA | 243 | GE19298-PA | 1..243 | 1..245 | 1095 | 91 | Plus |