BDGP Sequence Production Resources |
Search the DGRC for RE13129
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 131 |
Well: | 29 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG6106-RA |
Protein status: | RE13129.pep: gold |
Preliminary Size: | 1500 |
Sequenced Size: | 1890 |
Gene | Date | Evidence |
---|---|---|
CG6106 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6106 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6106 | 2003-08-11 | Blastp of sequenced clone |
CG6106 | 2008-04-29 | Release 5.5 accounting |
CG6106 | 2008-08-15 | Release 5.9 accounting |
CG6106 | 2008-12-18 | 5.12 accounting |
1890 bp (1890 high quality bases) assembled on 2003-08-11
GenBank Submission: AY071041
> RE13129.complete AGGAGTCAGCTGCTTTTAGAATGGATCTGTTGTTTCTCAGCCGGCGAATT TTCCTGGGCGATGGCAGCCAAAACGCCCTGATCCATGGCGGCATCATCGT GGATACAGAGGGCATTATACGCAGGGTGCTACGTTCACCGCAGGAGGTTA ATACCTATTTGTACAACACAGAATCCGAATCGGTTTACGATTTCGGGGAC CTGGTACTGATGCCCGGTCTGATTGATCCCAATGTCCATATCAACGAGCC GGGTCGCAAGGACTGGGAGGGTTTTGCAACTGCCACCAAGGCGGCGGCCG CCGGTGGCTTCACCACAATCATCGATCGACCCACCAACGCGCAACCACCC ACCGTTAGTGTGGCCCATCTCAAGGCCAAAACGTCGACGGCCCGTGGAAA GATCTATGTGGACGTGGGTTTTTGGGGCGGACTAGTGCCCGGAAACGGGG ATCAGCTGGCTGCACTTTTGGGTGCCGGTGTCATGGGTCTGCAGTGCACA TTGTGCGATCCCGCGGCGCCCGTCTCTCAGGAATTTCCCGCCGTAAACGA ATCTCAGCTGGAGGAGGCTCTTTCCCAGTTGGACAAGGATCAGGCTGAAG GGGAAGCAATCGTAGCGGTGCATGCTGAGCTGCCGCTGACCACCGAAATC CATCCGGACGAGGAGGCGCCCCGGGAGTATGGCACTTTCCTGGTGACTCG TCCACCCCAAATGGAGATTTCCGCGACGCAGTTGCTCTGCCGGCTGGCGA ATCGCCACCCGCGGCGCTGCATACACATCCTCAACTGCAGCAGCGGCGAA AGTCTGCCGCTGGTGGAGGAGTGTCGACGGCAGGGCGGGAATCTAACGGT GGACACCTGTCCGCATTACCTGGCCCTGGCGGCCGAGGATGTGCCCGATT GCGGCACGGAGTTCAAGACCTGGCCACCGATTCGGGAGCGTCGCAATCAG GAGCAATTGTGGCAGGCTCTGAGACCGGGCGGAGCCATCCGCATGATTGG CAGTGATCACTCGCCGGCGACGCCGGGTGCACGTGCTCTCACCTGCGGAA GGGGGCGTGGCAACTTCCTGAAGGCGTGGCCGGGCATCAACTCGTTGCAA CTCAGCCTGTCGGTCGTTTGGACAGCGGCCGCCAATCGGCGAGGATCCGC CAACCTGACCATCGCGGACATCCATCGTCTGATGTGCCAGGAGCCGGCGA ACCTGTGCGGCTTGTCCGCCTCGAAGGGCCGCATTGCCGAGGGCTACGAT GCCGACTTCTGTGTGTGGAGTCCCGAGGAGGAGTTCACCGTGGGCCCGGA GCTGCTCTACACGGCCACGAAGGCCACCCCGTACGCGGGTCAAAAGTTGC GGGGCGTGGTGCATGCCACGGTGGTGCGGGGCCTGCATGTCTACCAACAG TTCGAGGGCTTCGGCCAGCCCCTGGGCAAGGTGCTGCTTCGGAGGAGCAG TCGAAAACTGGTCAAGTTCGTGAGCATGTGAGGGAGATGGGATGGCAGGG ATTGGCAGGGATTGGGATGAAGTTGACGGAAGTGGGTGGTGGATGGGAGG TAAACTTTGTTAATTAAAATCATTAAGAGATTGGGCTGTGTTCGTTGATA TTCCGTCGTCACCTTCCCGTCTTACCGATACACTTTCCCAGGGGTATAGC TCTTTTCTGGCATATGATTCAAAAATTATTCATTTAATCCGCCCACGATG CAATTAATTAACACAACCCTCAGTCGGAATTGAAAAAGGTTTCACATAAC AATTTATAAATACCAATAATTGTGGGCTTAAAAACATAATTCATAAGTGC CTTGCAAATCCCTTGAATTTTCATCTCGTAATAAGCGTTGGCAATTTGCA CAATAAATGTTATTCTAATAATAGCGAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6106-RA | 2057 | CG6106-RA | 139..2014 | 4..1879 | 9380 | 100 | Plus |
CG6106.a | 1863 | CG6106.a | 127..1863 | 143..1879 | 8685 | 100 | Plus |
CG6106.b | 1824 | CG6106.b | 112..1824 | 167..1879 | 8565 | 100 | Plus |
CG6106.a | 1863 | CG6106.a | 5..127 | 4..126 | 615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 18250414..18251158 | 1142..1876 | 3480 | 98.1 | Plus |
chrX | 22417052 | chrX | 18249119..18249646 | 617..1144 | 2580 | 99.2 | Plus |
chrX | 22417052 | chrX | 18248245..18248739 | 126..620 | 2430 | 99.4 | Plus |
chrX | 22417052 | chrX | 18248067..18248189 | 4..126 | 600 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 18361225..18361962 | 1142..1879 | 3690 | 100 | Plus |
X | 23542271 | X | 18359930..18360457 | 617..1144 | 2640 | 100 | Plus |
X | 23542271 | X | 18359064..18359558 | 126..620 | 2475 | 100 | Plus |
X | 23542271 | X | 18358886..18359008 | 4..126 | 615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 18369323..18370060 | 1142..1879 | 3690 | 100 | Plus |
X | 23527363 | X | 18368028..18368555 | 617..1144 | 2640 | 100 | Plus |
X | 23527363 | X | 18367162..18367656 | 126..620 | 2475 | 100 | Plus |
X | 23527363 | X | 18366984..18367106 | 4..126 | 615 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 18248064..18248189 | 1..126 | 98 | -> | Plus |
chrX | 18248246..18248736 | 127..617 | 99 | -> | Plus |
chrX | 18249120..18249645 | 618..1143 | 99 | -> | Plus |
chrX | 18250416..18251158 | 1144..1876 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6106-RA | 1..1461 | 21..1481 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6106-RA | 1..1461 | 21..1481 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6106-RA | 1..1461 | 21..1481 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6106-RA | 1..1461 | 21..1481 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6106-RA | 1..1461 | 21..1481 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6106-RA | 1..1876 | 1..1876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6106-RA | 1..1876 | 1..1876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6106-RA | 3..1878 | 1..1876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6106-RA | 1..1876 | 1..1876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6106-RA | 3..1878 | 1..1876 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18358883..18359008 | 1..126 | 99 | -> | Plus |
X | 18359065..18359555 | 127..617 | 100 | -> | Plus |
X | 18359931..18360456 | 618..1143 | 100 | -> | Plus |
X | 18361227..18361959 | 1144..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18358883..18359008 | 1..126 | 99 | -> | Plus |
X | 18359065..18359555 | 127..617 | 100 | -> | Plus |
X | 18359931..18360456 | 618..1143 | 100 | -> | Plus |
X | 18361227..18361959 | 1144..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18358883..18359008 | 1..126 | 99 | -> | Plus |
X | 18359065..18359555 | 127..617 | 100 | -> | Plus |
X | 18359931..18360456 | 618..1143 | 100 | -> | Plus |
X | 18361227..18361959 | 1144..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 18252916..18253041 | 1..126 | 99 | -> | Plus |
arm_X | 18253098..18253588 | 127..617 | 100 | -> | Plus |
arm_X | 18253964..18254489 | 618..1143 | 100 | -> | Plus |
arm_X | 18255260..18255992 | 1144..1876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18367163..18367653 | 127..617 | 100 | -> | Plus |
X | 18368029..18368554 | 618..1143 | 100 | -> | Plus |
X | 18369325..18370057 | 1144..1876 | 100 | Plus | |
X | 18366981..18367106 | 1..126 | 99 | -> | Plus |
Translation from 20 to 1480
> RE13129.hyp MDLLFLSRRIFLGDGSQNALIHGGIIVDTEGIIRRVLRSPQEVNTYLYNT ESESVYDFGDLVLMPGLIDPNVHINEPGRKDWEGFATATKAAAAGGFTTI IDRPTNAQPPTVSVAHLKAKTSTARGKIYVDVGFWGGLVPGNGDQLAALL GAGVMGLQCTLCDPAAPVSQEFPAVNESQLEEALSQLDKDQAEGEAIVAV HAELPLTTEIHPDEEAPREYGTFLVTRPPQMEISATQLLCRLANRHPRRC IHILNCSSGESLPLVEECRRQGGNLTVDTCPHYLALAAEDVPDCGTEFKT WPPIRERRNQEQLWQALRPGGAIRMIGSDHSPATPGARALTCGRGRGNFL KAWPGINSLQLSLSVVWTAAANRRGSANLTIADIHRLMCQEPANLCGLSA SKGRIAEGYDADFCVWSPEEEFTVGPELLYTATKATPYAGQKLRGVVHAT VVRGLHVYQQFEGFGQPLGKVLLRRSSRKLVKFVSM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6106-PB | 486 | CG6106-PB | 1..486 | 1..486 | 2557 | 100 | Plus |
CG6106-PA | 486 | CG6106-PA | 1..486 | 1..486 | 2557 | 100 | Plus |
CRMP-PA | 589 | CG1411-PA | 66..471 | 57..466 | 221 | 25.3 | Plus |
Translation from 20 to 1480
> RE13129.pep MDLLFLSRRIFLGDGSQNALIHGGIIVDTEGIIRRVLRSPQEVNTYLYNT ESESVYDFGDLVLMPGLIDPNVHINEPGRKDWEGFATATKAAAAGGFTTI IDRPTNAQPPTVSVAHLKAKTSTARGKIYVDVGFWGGLVPGNGDQLAALL GAGVMGLQCTLCDPAAPVSQEFPAVNESQLEEALSQLDKDQAEGEAIVAV HAELPLTTEIHPDEEAPREYGTFLVTRPPQMEISATQLLCRLANRHPRRC IHILNCSSGESLPLVEECRRQGGNLTVDTCPHYLALAAEDVPDCGTEFKT WPPIRERRNQEQLWQALRPGGAIRMIGSDHSPATPGARALTCGRGRGNFL KAWPGINSLQLSLSVVWTAAANRRGSANLTIADIHRLMCQEPANLCGLSA SKGRIAEGYDADFCVWSPEEEFTVGPELLYTATKATPYAGQKLRGVVHAT VVRGLHVYQQFEGFGQPLGKVLLRRSSRKLVKFVSM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22433-PA | 488 | GF22433-PA | 1..488 | 1..486 | 2020 | 79.4 | Plus |
Dana\GF21836-PA | 2233 | GF21836-PA | 1481..1827 | 61..466 | 235 | 26 | Plus |
Dana\GF20697-PA | 659 | GF20697-PA | 330..539 | 253..466 | 153 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19159-PA | 484 | GG19159-PA | 1..484 | 1..486 | 2413 | 93.2 | Plus |
Dere\GG12914-PA | 589 | GG12914-PA | 66..471 | 57..466 | 222 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17725-PA | 546 | GH17725-PA | 53..546 | 1..486 | 1829 | 70.6 | Plus |
Dgri\GH12789-PA | 2225 | GH12789-PA | 1469..1798 | 61..454 | 217 | 24.8 | Plus |
Dgri\GH20890-PA | 593 | GH20890-PA | 64..476 | 55..466 | 169 | 22.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6106-PB | 486 | CG6106-PB | 1..486 | 1..486 | 2557 | 100 | Plus |
CG6106-PA | 486 | CG6106-PA | 1..486 | 1..486 | 2557 | 100 | Plus |
CRMP-PA | 589 | CG1411-PA | 66..471 | 57..466 | 221 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15473-PA | 488 | GI15473-PA | 1..488 | 1..486 | 1731 | 69 | Plus |
Dmoj\GI15230-PA | 2220 | GI15230-PA | 1463..1809 | 61..466 | 245 | 26 | Plus |
Dmoj\GI23638-PA | 588 | GI23638-PA | 64..454 | 55..454 | 163 | 23 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26968-PA | 488 | GL26968-PA | 1..488 | 1..486 | 1921 | 75.9 | Plus |
Dper\GL20254-PA | 2216 | GL20254-PA | 1471..1800 | 61..454 | 251 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19356-PA | 488 | GA19356-PA | 1..488 | 1..486 | 1922 | 76.1 | Plus |
Dpse\GA14996-PA | 2238 | GA14996-PA | 1473..1802 | 61..454 | 251 | 26.3 | Plus |
Dpse\GA12765-PB | 598 | GA12765-PB | 66..476 | 57..466 | 218 | 24.2 | Plus |
Dpse\GA12765-PA | 593 | GA12765-PA | 66..471 | 57..466 | 217 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22893-PA | 485 | GM22893-PA | 1..485 | 1..486 | 2498 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17391-PA | 485 | GD17391-PA | 1..485 | 1..486 | 2500 | 96.7 | Plus |
Dsim\r-PA | 866 | GD24842-PA | 112..454 | 61..467 | 226 | 24.5 | Plus |
Dsim\GD19795-PA | 589 | GD19795-PA | 66..471 | 57..466 | 220 | 25.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19184-PA | 565 | GJ19184-PA | 85..565 | 7..486 | 1745 | 69 | Plus |
Dvir\GJ18689-PA | 2226 | GJ18689-PA | 1461..1803 | 61..467 | 250 | 25.7 | Plus |
Dvir\GJ21612-PA | 533 | GJ21612-PA | 63..451 | 62..454 | 189 | 23.4 | Plus |
Dvir\GJ24714-PA | 588 | GJ24714-PA | 64..471 | 55..466 | 183 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20004-PA | 494 | GK20004-PA | 1..494 | 1..486 | 1781 | 67.3 | Plus |
Dwil\GK19926-PA | 2207 | GK19926-PA | 1606..1801 | 249..467 | 181 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17722-PA | 484 | GE17722-PA | 1..484 | 1..486 | 2362 | 93.6 | Plus |
Dyak\GE17287-PA | 2184 | GE17287-PA | 1435..1764 | 61..454 | 233 | 25.3 | Plus |
Dyak\GE10139-PA | 589 | GE10139-PA | 66..471 | 57..466 | 222 | 25.4 | Plus |