Clone RE13129 Report

Search the DGRC for RE13129

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:131
Well:29
Vector:pFlc-1
Associated Gene/TranscriptCG6106-RA
Protein status:RE13129.pep: gold
Preliminary Size:1500
Sequenced Size:1890

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6106 2002-01-01 Sim4 clustering to Release 2
CG6106 2003-01-01 Sim4 clustering to Release 3
CG6106 2003-08-11 Blastp of sequenced clone
CG6106 2008-04-29 Release 5.5 accounting
CG6106 2008-08-15 Release 5.9 accounting
CG6106 2008-12-18 5.12 accounting

Clone Sequence Records

RE13129.complete Sequence

1890 bp (1890 high quality bases) assembled on 2003-08-11

GenBank Submission: AY071041

> RE13129.complete
AGGAGTCAGCTGCTTTTAGAATGGATCTGTTGTTTCTCAGCCGGCGAATT
TTCCTGGGCGATGGCAGCCAAAACGCCCTGATCCATGGCGGCATCATCGT
GGATACAGAGGGCATTATACGCAGGGTGCTACGTTCACCGCAGGAGGTTA
ATACCTATTTGTACAACACAGAATCCGAATCGGTTTACGATTTCGGGGAC
CTGGTACTGATGCCCGGTCTGATTGATCCCAATGTCCATATCAACGAGCC
GGGTCGCAAGGACTGGGAGGGTTTTGCAACTGCCACCAAGGCGGCGGCCG
CCGGTGGCTTCACCACAATCATCGATCGACCCACCAACGCGCAACCACCC
ACCGTTAGTGTGGCCCATCTCAAGGCCAAAACGTCGACGGCCCGTGGAAA
GATCTATGTGGACGTGGGTTTTTGGGGCGGACTAGTGCCCGGAAACGGGG
ATCAGCTGGCTGCACTTTTGGGTGCCGGTGTCATGGGTCTGCAGTGCACA
TTGTGCGATCCCGCGGCGCCCGTCTCTCAGGAATTTCCCGCCGTAAACGA
ATCTCAGCTGGAGGAGGCTCTTTCCCAGTTGGACAAGGATCAGGCTGAAG
GGGAAGCAATCGTAGCGGTGCATGCTGAGCTGCCGCTGACCACCGAAATC
CATCCGGACGAGGAGGCGCCCCGGGAGTATGGCACTTTCCTGGTGACTCG
TCCACCCCAAATGGAGATTTCCGCGACGCAGTTGCTCTGCCGGCTGGCGA
ATCGCCACCCGCGGCGCTGCATACACATCCTCAACTGCAGCAGCGGCGAA
AGTCTGCCGCTGGTGGAGGAGTGTCGACGGCAGGGCGGGAATCTAACGGT
GGACACCTGTCCGCATTACCTGGCCCTGGCGGCCGAGGATGTGCCCGATT
GCGGCACGGAGTTCAAGACCTGGCCACCGATTCGGGAGCGTCGCAATCAG
GAGCAATTGTGGCAGGCTCTGAGACCGGGCGGAGCCATCCGCATGATTGG
CAGTGATCACTCGCCGGCGACGCCGGGTGCACGTGCTCTCACCTGCGGAA
GGGGGCGTGGCAACTTCCTGAAGGCGTGGCCGGGCATCAACTCGTTGCAA
CTCAGCCTGTCGGTCGTTTGGACAGCGGCCGCCAATCGGCGAGGATCCGC
CAACCTGACCATCGCGGACATCCATCGTCTGATGTGCCAGGAGCCGGCGA
ACCTGTGCGGCTTGTCCGCCTCGAAGGGCCGCATTGCCGAGGGCTACGAT
GCCGACTTCTGTGTGTGGAGTCCCGAGGAGGAGTTCACCGTGGGCCCGGA
GCTGCTCTACACGGCCACGAAGGCCACCCCGTACGCGGGTCAAAAGTTGC
GGGGCGTGGTGCATGCCACGGTGGTGCGGGGCCTGCATGTCTACCAACAG
TTCGAGGGCTTCGGCCAGCCCCTGGGCAAGGTGCTGCTTCGGAGGAGCAG
TCGAAAACTGGTCAAGTTCGTGAGCATGTGAGGGAGATGGGATGGCAGGG
ATTGGCAGGGATTGGGATGAAGTTGACGGAAGTGGGTGGTGGATGGGAGG
TAAACTTTGTTAATTAAAATCATTAAGAGATTGGGCTGTGTTCGTTGATA
TTCCGTCGTCACCTTCCCGTCTTACCGATACACTTTCCCAGGGGTATAGC
TCTTTTCTGGCATATGATTCAAAAATTATTCATTTAATCCGCCCACGATG
CAATTAATTAACACAACCCTCAGTCGGAATTGAAAAAGGTTTCACATAAC
AATTTATAAATACCAATAATTGTGGGCTTAAAAACATAATTCATAAGTGC
CTTGCAAATCCCTTGAATTTTCATCTCGTAATAAGCGTTGGCAATTTGCA
CAATAAATGTTATTCTAATAATAGCGAAAAAAAAAAAAAA

RE13129.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-RA 2057 CG6106-RA 139..2014 4..1879 9380 100 Plus
CG6106.a 1863 CG6106.a 127..1863 143..1879 8685 100 Plus
CG6106.b 1824 CG6106.b 112..1824 167..1879 8565 100 Plus
CG6106.a 1863 CG6106.a 5..127 4..126 615 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18250414..18251158 1142..1876 3480 98.1 Plus
chrX 22417052 chrX 18249119..18249646 617..1144 2580 99.2 Plus
chrX 22417052 chrX 18248245..18248739 126..620 2430 99.4 Plus
chrX 22417052 chrX 18248067..18248189 4..126 600 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:35:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18361225..18361962 1142..1879 3690 100 Plus
X 23542271 X 18359930..18360457 617..1144 2640 100 Plus
X 23542271 X 18359064..18359558 126..620 2475 100 Plus
X 23542271 X 18358886..18359008 4..126 615 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18369323..18370060 1142..1879 3690 100 Plus
X 23527363 X 18368028..18368555 617..1144 2640 100 Plus
X 23527363 X 18367162..18367656 126..620 2475 100 Plus
X 23527363 X 18366984..18367106 4..126 615 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:59:16 has no hits.

RE13129.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:59:57 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18248064..18248189 1..126 98 -> Plus
chrX 18248246..18248736 127..617 99 -> Plus
chrX 18249120..18249645 618..1143 99 -> Plus
chrX 18250416..18251158 1144..1876 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:55:11 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 1..1461 21..1481 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:52:53 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 1..1461 21..1481 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:15:46 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 1..1461 21..1481 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:18:30 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 1..1461 21..1481 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:28:08 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 1..1461 21..1481 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:16:24 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 1..1876 1..1876 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:52:52 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 1..1876 1..1876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:15:46 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 3..1878 1..1876 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:18:30 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 1..1876 1..1876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:28:08 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
CG6106-RA 3..1878 1..1876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:57 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
X 18358883..18359008 1..126 99 -> Plus
X 18359065..18359555 127..617 100 -> Plus
X 18359931..18360456 618..1143 100 -> Plus
X 18361227..18361959 1144..1876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:57 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
X 18358883..18359008 1..126 99 -> Plus
X 18359065..18359555 127..617 100 -> Plus
X 18359931..18360456 618..1143 100 -> Plus
X 18361227..18361959 1144..1876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:57 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
X 18358883..18359008 1..126 99 -> Plus
X 18359065..18359555 127..617 100 -> Plus
X 18359931..18360456 618..1143 100 -> Plus
X 18361227..18361959 1144..1876 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:15:46 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18252916..18253041 1..126 99 -> Plus
arm_X 18253098..18253588 127..617 100 -> Plus
arm_X 18253964..18254489 618..1143 100 -> Plus
arm_X 18255260..18255992 1144..1876 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:52:43 Download gff for RE13129.complete
Subject Subject Range Query Range Percent Splice Strand
X 18367163..18367653 127..617 100 -> Plus
X 18368029..18368554 618..1143 100 -> Plus
X 18369325..18370057 1144..1876 100   Plus
X 18366981..18367106 1..126 99 -> Plus

RE13129.hyp Sequence

Translation from 20 to 1480

> RE13129.hyp
MDLLFLSRRIFLGDGSQNALIHGGIIVDTEGIIRRVLRSPQEVNTYLYNT
ESESVYDFGDLVLMPGLIDPNVHINEPGRKDWEGFATATKAAAAGGFTTI
IDRPTNAQPPTVSVAHLKAKTSTARGKIYVDVGFWGGLVPGNGDQLAALL
GAGVMGLQCTLCDPAAPVSQEFPAVNESQLEEALSQLDKDQAEGEAIVAV
HAELPLTTEIHPDEEAPREYGTFLVTRPPQMEISATQLLCRLANRHPRRC
IHILNCSSGESLPLVEECRRQGGNLTVDTCPHYLALAAEDVPDCGTEFKT
WPPIRERRNQEQLWQALRPGGAIRMIGSDHSPATPGARALTCGRGRGNFL
KAWPGINSLQLSLSVVWTAAANRRGSANLTIADIHRLMCQEPANLCGLSA
SKGRIAEGYDADFCVWSPEEEFTVGPELLYTATKATPYAGQKLRGVVHAT
VVRGLHVYQQFEGFGQPLGKVLLRRSSRKLVKFVSM*

RE13129.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-PB 486 CG6106-PB 1..486 1..486 2557 100 Plus
CG6106-PA 486 CG6106-PA 1..486 1..486 2557 100 Plus
CRMP-PA 589 CG1411-PA 66..471 57..466 221 25.3 Plus

RE13129.pep Sequence

Translation from 20 to 1480

> RE13129.pep
MDLLFLSRRIFLGDGSQNALIHGGIIVDTEGIIRRVLRSPQEVNTYLYNT
ESESVYDFGDLVLMPGLIDPNVHINEPGRKDWEGFATATKAAAAGGFTTI
IDRPTNAQPPTVSVAHLKAKTSTARGKIYVDVGFWGGLVPGNGDQLAALL
GAGVMGLQCTLCDPAAPVSQEFPAVNESQLEEALSQLDKDQAEGEAIVAV
HAELPLTTEIHPDEEAPREYGTFLVTRPPQMEISATQLLCRLANRHPRRC
IHILNCSSGESLPLVEECRRQGGNLTVDTCPHYLALAAEDVPDCGTEFKT
WPPIRERRNQEQLWQALRPGGAIRMIGSDHSPATPGARALTCGRGRGNFL
KAWPGINSLQLSLSVVWTAAANRRGSANLTIADIHRLMCQEPANLCGLSA
SKGRIAEGYDADFCVWSPEEEFTVGPELLYTATKATPYAGQKLRGVVHAT
VVRGLHVYQQFEGFGQPLGKVLLRRSSRKLVKFVSM*

RE13129.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22433-PA 488 GF22433-PA 1..488 1..486 2020 79.4 Plus
Dana\GF21836-PA 2233 GF21836-PA 1481..1827 61..466 235 26 Plus
Dana\GF20697-PA 659 GF20697-PA 330..539 253..466 153 27.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19159-PA 484 GG19159-PA 1..484 1..486 2413 93.2 Plus
Dere\GG12914-PA 589 GG12914-PA 66..471 57..466 222 25.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17725-PA 546 GH17725-PA 53..546 1..486 1829 70.6 Plus
Dgri\GH12789-PA 2225 GH12789-PA 1469..1798 61..454 217 24.8 Plus
Dgri\GH20890-PA 593 GH20890-PA 64..476 55..466 169 22.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6106-PB 486 CG6106-PB 1..486 1..486 2557 100 Plus
CG6106-PA 486 CG6106-PA 1..486 1..486 2557 100 Plus
CRMP-PA 589 CG1411-PA 66..471 57..466 221 25.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15473-PA 488 GI15473-PA 1..488 1..486 1731 69 Plus
Dmoj\GI15230-PA 2220 GI15230-PA 1463..1809 61..466 245 26 Plus
Dmoj\GI23638-PA 588 GI23638-PA 64..454 55..454 163 23 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26968-PA 488 GL26968-PA 1..488 1..486 1921 75.9 Plus
Dper\GL20254-PA 2216 GL20254-PA 1471..1800 61..454 251 26.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19356-PA 488 GA19356-PA 1..488 1..486 1922 76.1 Plus
Dpse\GA14996-PA 2238 GA14996-PA 1473..1802 61..454 251 26.3 Plus
Dpse\GA12765-PB 598 GA12765-PB 66..476 57..466 218 24.2 Plus
Dpse\GA12765-PA 593 GA12765-PA 66..471 57..466 217 24.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22893-PA 485 GM22893-PA 1..485 1..486 2498 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17391-PA 485 GD17391-PA 1..485 1..486 2500 96.7 Plus
Dsim\r-PA 866 GD24842-PA 112..454 61..467 226 24.5 Plus
Dsim\GD19795-PA 589 GD19795-PA 66..471 57..466 220 25.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19184-PA 565 GJ19184-PA 85..565 7..486 1745 69 Plus
Dvir\GJ18689-PA 2226 GJ18689-PA 1461..1803 61..467 250 25.7 Plus
Dvir\GJ21612-PA 533 GJ21612-PA 63..451 62..454 189 23.4 Plus
Dvir\GJ24714-PA 588 GJ24714-PA 64..471 55..466 183 24.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20004-PA 494 GK20004-PA 1..494 1..486 1781 67.3 Plus
Dwil\GK19926-PA 2207 GK19926-PA 1606..1801 249..467 181 28.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17722-PA 484 GE17722-PA 1..484 1..486 2362 93.6 Plus
Dyak\GE17287-PA 2184 GE17287-PA 1435..1764 61..454 233 25.3 Plus
Dyak\GE10139-PA 589 GE10139-PA 66..471 57..466 222 25.4 Plus